ZNF32-AS2 (ZNF32 antisense RNA 2) - Rat Genome Database

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Gene: ZNF32-AS2 (ZNF32 antisense RNA 2) Homo sapiens
Analyze
Symbol: ZNF32-AS2
Name: ZNF32 antisense RNA 2
RGD ID: 1346935
HGNC Page HGNC:23593
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: b402L1.7; zinc finger protein 32 opposite strand 2; ZNF32 antisense RNA 2 (non-protein coding); ZNF32OS2
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381043,645,942 - 43,648,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1043,645,942 - 43,648,019 (+)EnsemblGRCh38hg38GRCh38
GRCh371044,141,390 - 44,143,467 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map10q11.21NCBI
HuRef1040,668,395 - 40,670,472 (+)NCBIHuRef
CHM1_11044,181,002 - 44,183,079 (+)NCBICHM1_1
T2T-CHM13v2.01044,526,861 - 44,528,938 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10q11.21-21.1(chr10:42884294-52265317)x3 copy number gain See cases [RCV000134381] Chr10:42884294..52265317 [GRCh38]
Chr10:43379742..54025077 [GRCh37]
Chr10:42699748..53695083 [NCBI36]
Chr10:10q11.21-21.1		 pathogenic
GRCh38/hg38 10q11.21-11.23(chr10:42395201-50877059)x3 copy number gain See cases [RCV000134846] Chr10:42395201..50877059 [GRCh38]
Chr10:42890649..52636819 [GRCh37]
Chr10:42210655..52306825 [NCBI36]
Chr10:10q11.21-11.23		 pathogenic
GRCh38/hg38 10q11.21-22.2(chr10:42685306-73715908)x3 copy number gain See cases [RCV000134848] Chr10:42685306..73715908 [GRCh38]
Chr10:43180754..75475666 [GRCh37]
Chr10:42500760..75145672 [NCBI36]
Chr10:10q11.21-22.2		 pathogenic
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22		 benign
GRCh38/hg38 10q11.21-21.3(chr10:42112187-67400675)x3 copy number gain See cases [RCV000142967] Chr10:42112187..67400675 [GRCh38]
Chr10:42607635..69160433 [GRCh37]
Chr10:41927641..68830439 [NCBI36]
Chr10:10q11.21-21.3		 pathogenic
GRCh38/hg38 10q11.21-21.2(chr10:42335305-60284876)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052506]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052506]|See cases [RCV000052506] Chr10:42335305..60284876 [GRCh38]
Chr10:42830753..62044634 [GRCh37]
Chr10:42150759..61714640 [NCBI36]
Chr10:10q11.21-21.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:227
Count of miRNA genes:214
Interacting mature miRNAs:222
Transcripts:ENST00000418966
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 40 4 78 5 20 54 12 403 43 15
Low 2378 2218 1542 487 1094 327 4257 2045 3319 356 1002 1509 168 1199 2730 2
Below cutoff 48 596 126 119 554 120 74 141 328 47 39 47 2 5 42 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000418966
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1043,645,942 - 43,648,019 (+)Ensembl
RefSeq Acc Id: NR_047558
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,645,942 - 43,648,019 (+)NCBI
GRCh371044,141,390 - 44,143,467 (+)NCBI
HuRef1040,668,395 - 40,670,472 (+)NCBI
CHM1_11044,181,002 - 44,183,079 (+)NCBI
T2T-CHM13v2.01044,526,861 - 44,528,938 (+)NCBI
Sequence:
Promoters
RGD ID:15096394
Promoter ID:EPDNEWNC_H1238
Type:initiation region
Name:ZNF32-AS2_1
Description:ZNF32 antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:23593]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381043,645,955 - 43,646,015EPDNEWNC

Additional Information

Database Acc Id Source(s)
COSMIC ZNF32-AS2 COSMIC
Ensembl Genes ENSG00000230565 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000418966 ENTREZGENE
GTEx ENSG00000230565 GTEx
HGNC ID HGNC:23593 ENTREZGENE
Human Proteome Map ZNF32-AS2 Human Proteome Map
NCBI Gene 414208 ENTREZGENE
PharmGKB PA134893790 PharmGKB
RNAcentral URS00001BA165 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-08-21 ZNF32-AS2  ZNF32 antisense RNA 2  ZNF32-AS2  ZNF32 antisense RNA 2 (non-protein coding)  Symbol and/or name change 5135510 APPROVED
2011-09-13 ZNF32-AS2  ZNF32 antisense RNA 2 (non-protein coding)  ZNF32OS2  zinc finger protein 32 opposite strand 2  Symbol and/or name change 5135510 APPROVED