GLRXP1 (glutaredoxin pseudogene 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: GLRXP1 (glutaredoxin pseudogene 1) Homo sapiens
Analyze
Symbol: GLRXP1
Name: glutaredoxin pseudogene 1
RGD ID: 1346424
HGNC Page HGNC:16544
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: bA425M5.1; GLRXP; glutaredoxin (thioltransferase) pseudogene 1
Related Functional Gene: GLRX  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382037,602,353 - 37,603,249 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2037,602,852 - 37,603,185 (-)EnsemblGRCh38hg38GRCh38
GRCh372036,230,755 - 36,231,651 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362035,664,568 - 35,665,093 (-)NCBINCBI36Build 36hg18NCBI36
Celera2032,938,205 - 32,938,901 (-)NCBICelera
Cytogenetic Map20q11.23NCBI
HuRef2032,966,068 - 32,966,764 (-)NCBIHuRef
CHM1_12036,133,762 - 36,134,458 (-)NCBICHM1_1
T2T-CHM13v2.02039,326,448 - 39,327,344 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:11696981   PMID:11702225   PMID:15637068  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:225
Interacting mature miRNAs:234
Transcripts:ENST00000423261
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 2 2 2 4 1 11 1 7 3 4
Below cutoff 50 115 52 18 50 13 207 151 96 6 93 38 5 38 176 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000423261
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2037,602,852 - 37,603,185 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC GLRXP1 COSMIC
Ensembl Genes ENSG00000228234 Ensembl
GTEx ENSG00000228234 GTEx
HGNC ID HGNC:16544 ENTREZGENE
Human Proteome Map GLRXP1 Human Proteome Map
NCBI Gene 170522 ENTREZGENE
PharmGKB PA28733 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-30 GLRXP1  glutaredoxin pseudogene 1    glutaredoxin (thioltransferase) pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 GLRXP1  glutaredoxin (thioltransferase) pseudogene 1  GLRXP  glutaredoxin (thioltransferase) pseudogene  Symbol and/or name change 5135510 APPROVED