OR6C70 (olfactory receptor family 6 subfamily C member 70) - Rat Genome Database

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Gene: OR6C70 (olfactory receptor family 6 subfamily C member 70) Homo sapiens
Analyze
Symbol: OR6C70
Name: olfactory receptor family 6 subfamily C member 70
RGD ID: 1346205
HGNC Page HGNC:31299
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: olfactory receptor 6C70; olfactory receptor, family 6, subfamily C, member 70
RGD Orthologs
Mouse
Rat
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,469,200 - 55,470,138 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,469,200 - 55,470,138 (-)EnsemblGRCh38hg38GRCh38
GRCh371255,862,984 - 55,863,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,149,251 - 54,150,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 341254,149,250 - 54,150,189NCBI
Celera1255,515,181 - 55,516,119 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1252,901,748 - 52,902,686 (-)NCBIHuRef
CHM1_11255,829,771 - 55,830,709 (-)NCBICHM1_1
T2T-CHM13v2.01255,435,752 - 55,436,690 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21873635   PMID:24152035   PMID:26186194   PMID:28514442  


Genomics

Comparative Map Data
OR6C70
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381255,469,200 - 55,470,138 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1255,469,200 - 55,470,138 (-)EnsemblGRCh38hg38GRCh38
GRCh371255,862,984 - 55,863,922 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361254,149,251 - 54,150,189 (-)NCBINCBI36Build 36hg18NCBI36
Build 341254,149,250 - 54,150,189NCBI
Celera1255,515,181 - 55,516,119 (-)NCBICelera
Cytogenetic Map12q13.2NCBI
HuRef1252,901,748 - 52,902,686 (-)NCBIHuRef
CHM1_11255,829,771 - 55,830,709 (-)NCBICHM1_1
T2T-CHM13v2.01255,435,752 - 55,436,690 (-)NCBIT2T-CHM13v2.0
Or6c70
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910129,709,692 - 129,710,624 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10129,707,342 - 129,715,720 (-)EnsemblGRCm39 Ensembl
GRCm3810129,873,823 - 129,874,755 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10129,871,473 - 129,879,851 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710129,310,879 - 129,311,811 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610129,276,772 - 129,277,704 (-)NCBIMGSCv36mm8
Celera10132,259,472 - 132,260,404 (-)NCBICelera
Cytogenetic Map10D3NCBI
cM Map1077.58NCBI
Olr1057
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr877,125,807 - 7,126,745 (-)NCBIGRCr8
mRatBN7.276,474,994 - 6,475,932 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl73,102,570 - 3,103,508 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx79,366,702 - 9,367,640 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0711,242,363 - 11,243,301 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.079,050,574 - 9,051,512 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0716,404,763 - 16,405,701 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl716,404,755 - 16,405,751 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0716,571,902 - 16,572,840 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.477,912,859 - 7,913,797 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.177,912,858 - 7,913,797 (-)NCBI
Celera74,699,018 - 4,699,956 (-)NCBICelera
Cytogenetic Map7q11NCBI
OR6C69
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12768,503 - 69,441 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2768,503 - 69,441 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2746,210,888 - 46,211,826 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02773,593 - 74,531 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2773,593 - 74,531 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12767,839 - 68,773 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02769,468 - 70,406 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02746,592,146 - 46,593,084 (+)NCBIUU_Cfam_GSD_1.0
LOC101971896
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494559,640,773 - 59,641,714 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004937074119,519 - 120,451 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004937074119,506 - 120,467 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100513710
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.2X142,540,005 - 142,540,904 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103238470
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11151,459,901 - 51,461,782 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037194,546,124 - 194,547,180 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR6C70
20 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001005499.1(OR6C70):c.453C>T (p.Phe151=) single nucleotide variant Malignant melanoma [RCV000062555] Chr12:55469686 [GRCh38]
Chr12:55863470 [GRCh37]
Chr12:54149737 [NCBI36]
Chr12:12q13.2
not provided
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh38/hg38 12q13.13-13.3(chr12:53420606-56202942)x3 copy number gain See cases [RCV000141435] Chr12:53420606..56202942 [GRCh38]
Chr12:53814390..56596726 [GRCh37]
Chr12:52100657..54882993 [NCBI36]
Chr12:12q13.13-13.3
pathogenic
NM_001005519.2(OR6C68):c.667A>T (p.Ile223Phe) single nucleotide variant Malignant melanoma [RCV000062556] Chr12:55493044 [GRCh38]
Chr12:55886828 [GRCh37]
Chr12:54173095 [NCBI36]
Chr12:12q13.2
not provided
NM_001005494.1(OR6C4):c.112C>T (p.Leu38=) single nucleotide variant Malignant melanoma [RCV000070100] Chr12:55551338 [GRCh38]
Chr12:55945122 [GRCh37]
Chr12:54231389 [NCBI36]
Chr12:12q13.2
not provided
NM_206899.1(OR10P1):c.73G>A (p.Gly25Ser) single nucleotide variant Malignant melanoma [RCV000070101] Chr12:55636964 [GRCh38]
Chr12:56030748 [GRCh37]
Chr12:54317015 [NCBI36]
Chr12:12q13.2
not provided
NM_206899.1(OR10P1):c.901G>A (p.Ala301Thr) single nucleotide variant Malignant melanoma [RCV000070102] Chr12:55637792 [GRCh38]
Chr12:56031576 [GRCh37]
Chr12:54317843 [NCBI36]
Chr12:12q13.2
not provided
NC_000012.12:g.55480386G>T single nucleotide variant Lung cancer [RCV000111122] Chr12:55480386 [GRCh38]
Chr12:55874170 [GRCh37]
Chr12:12q13.2
uncertain significance
NC_000012.12:g.55519536C>A single nucleotide variant Lung cancer [RCV000111123] Chr12:55519536 [GRCh38]
Chr12:55913320 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_206899.1(OR10P1):c.-1616T>C single nucleotide variant Lung cancer [RCV000111124] Chr12:55635276 [GRCh38]
Chr12:56029060 [GRCh37]
Chr12:12q13.2
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_001005499.1(OR6C70):c.704C>A (p.Ala235Asp) single nucleotide variant Inborn genetic diseases [RCV003274589] Chr12:55469435 [GRCh38]
Chr12:55863219 [GRCh37]
Chr12:12q13.2
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12q13.2-14.1(chr12:55552371-62126304)x3 copy number gain not provided [RCV001006505] Chr12:55552371..62126304 [GRCh37]
Chr12:12q13.2-14.1
pathogenic
NM_001005499.1(OR6C70):c.47C>T (p.Thr16Met) single nucleotide variant Inborn genetic diseases [RCV003297970] Chr12:55470092 [GRCh38]
Chr12:55863876 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.242T>A (p.Ile81Asn) single nucleotide variant Inborn genetic diseases [RCV002946316] Chr12:55469897 [GRCh38]
Chr12:55863681 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.130A>G (p.Ile44Val) single nucleotide variant Inborn genetic diseases [RCV002779499] Chr12:55470009 [GRCh38]
Chr12:55863793 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.23T>C (p.Ile8Thr) single nucleotide variant Inborn genetic diseases [RCV002784512] Chr12:55470116 [GRCh38]
Chr12:55863900 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.307A>G (p.Ile103Val) single nucleotide variant Inborn genetic diseases [RCV002978205] Chr12:55469832 [GRCh38]
Chr12:55863616 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.772A>C (p.Ile258Leu) single nucleotide variant Inborn genetic diseases [RCV002664732] Chr12:55469367 [GRCh38]
Chr12:55863151 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.38T>G (p.Leu13Arg) single nucleotide variant Inborn genetic diseases [RCV002930163] Chr12:55470101 [GRCh38]
Chr12:55863885 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.535A>C (p.Ile179Leu) single nucleotide variant Inborn genetic diseases [RCV002964622] Chr12:55469604 [GRCh38]
Chr12:55863388 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.385C>T (p.Arg129Cys) single nucleotide variant Inborn genetic diseases [RCV002960629] Chr12:55469754 [GRCh38]
Chr12:55863538 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.98G>C (p.Cys33Ser) single nucleotide variant Inborn genetic diseases [RCV002812881] Chr12:55470041 [GRCh38]
Chr12:55863825 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.893C>G (p.Ala298Gly) single nucleotide variant Inborn genetic diseases [RCV003174680] Chr12:55469246 [GRCh38]
Chr12:55863030 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.487A>G (p.Asn163Asp) single nucleotide variant Inborn genetic diseases [RCV003214649] Chr12:55469652 [GRCh38]
Chr12:55863436 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.248T>C (p.Ile83Thr) single nucleotide variant Inborn genetic diseases [RCV003208794] Chr12:55469891 [GRCh38]
Chr12:55863675 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.593T>A (p.Phe198Tyr) single nucleotide variant Inborn genetic diseases [RCV003363188] Chr12:55469546 [GRCh38]
Chr12:55863330 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.220G>T (p.Ala74Ser) single nucleotide variant Inborn genetic diseases [RCV003374600] Chr12:55469919 [GRCh38]
Chr12:55863703 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.297G>T (p.Leu99Phe) single nucleotide variant Inborn genetic diseases [RCV003383472] Chr12:55469842 [GRCh38]
Chr12:55863626 [GRCh37]
Chr12:12q13.2
uncertain significance
NM_001005499.1(OR6C70):c.463T>G (p.Phe155Val) single nucleotide variant Inborn genetic diseases [RCV003355153] Chr12:55469676 [GRCh38]
Chr12:55863460 [GRCh37]
Chr12:12q13.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:28
Count of miRNA genes:28
Interacting mature miRNAs:28
Transcripts:ENST00000327335
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 4 4 2 4 9 2 1 1 2 21 1 1
Below cutoff 166 446 93 54 95 7 356 239 201 18 242 109 47 75 242

Sequence


RefSeq Acc Id: ENST00000327335   ⟹   ENSP00000329153
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1255,469,200 - 55,470,138 (-)Ensembl
RefSeq Acc Id: NM_001005499   ⟹   NP_001005499
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381255,469,200 - 55,470,138 (-)NCBI
GRCh371255,862,984 - 55,863,922 (-)RGD
Build 361254,149,251 - 54,150,189 (-)NCBI Archive
Celera1255,515,181 - 55,516,119 (-)RGD
HuRef1252,901,748 - 52,902,686 (-)RGD
CHM1_11255,829,771 - 55,830,709 (-)NCBI
T2T-CHM13v2.01255,435,752 - 55,436,690 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001005499 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein A6NIJ9 (Get FASTA)   NCBI Sequence Viewer  
  ALI87620 (Get FASTA)   NCBI Sequence Viewer  
  EAW96813 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000329153
  ENSP00000329153.4
RefSeq Acc Id: NP_001005499   ⟸   NM_001005499
- UniProtKB: A6NIJ9 (UniProtKB/Swiss-Prot),   A0A126GW26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000329153   ⟸   ENST00000327335
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A6NIJ9-F1-model_v2 AlphaFold A6NIJ9 1-312 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:31299 AgrOrtholog
COSMIC OR6C70 COSMIC
Ensembl Genes ENSG00000184954 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000327335 ENTREZGENE
  ENST00000327335.4 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000184954 GTEx
HGNC ID HGNC:31299 ENTREZGENE
Human Proteome Map OR6C70 Human Proteome Map
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:390327 UniProtKB/Swiss-Prot
NCBI Gene 390327 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 6C70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134915898 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A126GW26 ENTREZGENE, UniProtKB/TrEMBL
  A6NIJ9 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR6C70  olfactory receptor family 6 subfamily C member 70  OR6C70  olfactory receptor, family 6, subfamily C, member 70  Symbol and/or name change 5135510 APPROVED