PTPRE (protein tyrosine phosphatase receptor type E) - Rat Genome Database

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Gene: PTPRE (protein tyrosine phosphatase receptor type E) Homo sapiens
Analyze
Symbol: PTPRE
Name: protein tyrosine phosphatase receptor type E
RGD ID: 1346203
HGNC Page HGNC
Description: Predicted to enable identical protein binding activity and protein tyrosine phosphatase activity. Predicted to be involved in negative regulation of insulin receptor signaling pathway; protein dephosphorylation; and regulation of mast cell activation. Predicted to act upstream of or within transmembrane receptor protein tyrosine phosphatase signaling pathway. Located in cytoplasm; nucleus; and plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: DKFZp313F1310; FLJ57799; FLJ58245; HPTPE; protein tyrosine phosphatase epsilon; protein tyrosine phosphatase, receptor type, epsilon polypeptide; protein-tyrosine phosphatase epsilon; PTPE; R-PTP-EPSILON; receptor-type tyrosine-protein phosphatase epsilon
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10127,907,103 - 128,085,855 (+)EnsemblGRCh38hg38GRCh38
GRCh3810127,907,053 - 128,085,855 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710129,705,367 - 129,884,119 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610129,595,315 - 129,774,155 (+)NCBINCBI36hg18NCBI36
Build 3410129,735,823 - 129,774,155NCBI
Celera10123,376,798 - 123,555,655 (+)NCBI
Cytogenetic Map10q26.2NCBI
HuRef10123,280,118 - 123,458,889 (+)NCBIHuRef
CHM1_110129,987,736 - 130,166,586 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-hydroxypropanoic acid  (EXP)
4,4'-sulfonyldiphenol  (ISO)
8-Br-cAMP  (EXP)
acetamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenite(3-)  (ISO)
arsenous acid  (EXP)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (EXP)
bisphenol A  (ISO)
butan-1-ol  (EXP)
calcitriol  (EXP)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (EXP,ISO)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (EXP)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (EXP)
endosulfan  (EXP,ISO)
ethyl methanesulfonate  (EXP)
fluoranthene  (ISO)
folic acid  (ISO)
formaldehyde  (EXP)
gentamycin  (ISO)
hydrazine  (ISO)
isobutanol  (EXP)
ivermectin  (EXP)
L-methionine  (ISO)
methapyrilene  (EXP)
methylmercury chloride  (EXP)
mitoxantrone  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (EXP)
oxaliplatin  (ISO)
paracetamol  (ISO)
phenethyl isothiocyanate  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
pirinixic acid  (ISO)
potassium chromate  (EXP)
rac-lactic acid  (EXP)
raloxifene  (EXP)
resveratrol  (EXP)
SB 431542  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP)
sunitinib  (EXP)
tamoxifen  (EXP)
temozolomide  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
theophylline  (EXP)
titanium dioxide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
vanadyl sulfate  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:2170109   PMID:7566098   PMID:7835887   PMID:8586417   PMID:8595895   PMID:8618876   PMID:8786123   PMID:8838320   PMID:8889548   PMID:10490839   PMID:10859312   PMID:10921884  
PMID:10980613   PMID:12121439   PMID:12193229   PMID:12376545   PMID:12477932   PMID:12615930   PMID:12754301   PMID:12861030   PMID:14702039   PMID:14980517   PMID:15390114   PMID:15489334  
PMID:15522235   PMID:15588985   PMID:15738637   PMID:15845350   PMID:16344560   PMID:16385451   PMID:17903293   PMID:18029348   PMID:18093973   PMID:18682798   PMID:19167335   PMID:20174665  
PMID:20201926   PMID:20379614   PMID:21734400   PMID:21873635   PMID:22117074   PMID:22952603   PMID:23440723   PMID:25772781   PMID:27432908   PMID:27880917   PMID:28235043   PMID:28319085  
PMID:28330616   PMID:28514442   PMID:28533407   PMID:28611215   PMID:31722979   PMID:32062451   PMID:33961781  


Genomics

Comparative Map Data
PTPRE
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10127,907,103 - 128,085,855 (+)EnsemblGRCh38hg38GRCh38
GRCh3810127,907,053 - 128,085,855 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710129,705,367 - 129,884,119 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610129,595,315 - 129,774,155 (+)NCBINCBI36hg18NCBI36
Build 3410129,735,823 - 129,774,155NCBI
Celera10123,376,798 - 123,555,655 (+)NCBI
Cytogenetic Map10q26.2NCBI
HuRef10123,280,118 - 123,458,889 (+)NCBIHuRef
CHM1_110129,987,736 - 130,166,586 (+)NCBICHM1_1
Ptpre
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397135,139,195 - 135,288,023 (+)NCBIGRCm39mm39
GRCm39 Ensembl7135,139,210 - 135,288,022 (+)Ensembl
GRCm387135,537,824 - 135,686,294 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7135,537,481 - 135,686,293 (+)EnsemblGRCm38mm10GRCm38
MGSCv377142,729,507 - 142,877,977 (+)NCBIGRCm37mm9NCBIm37
MGSCv367135,376,167 - 135,524,637 (+)NCBImm8
Celera7135,360,562 - 135,509,397 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map781.27NCBI
Ptpre
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21190,344,331 - 190,494,815 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1190,344,401 - 190,489,534 (+)Ensembl
Rnor_6.01207,820,719 - 207,987,123 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1207,887,209 - 207,987,136 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01214,818,446 - 214,920,034 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41195,263,489 - 195,303,249 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11195,421,407 - 195,453,236 (+)NCBI
Celera1188,164,525 - 188,204,261 (+)NCBICelera
Cytogenetic Map1q41NCBI
Ptpre
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554775,688,817 - 5,838,761 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554775,688,936 - 5,838,264 (+)NCBIChiLan1.0ChiLan1.0
PTPRE
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110128,744,234 - 128,922,584 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10128,836,367 - 128,922,584 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010124,494,150 - 124,673,579 (+)NCBIMhudiblu_PPA_v0panPan3
PTPRE
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12836,761,314 - 36,904,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2836,746,822 - 36,902,325 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2836,817,292 - 36,960,135 (+)NCBI
ROS_Cfam_1.02837,393,213 - 37,536,366 (+)NCBI
ROS_Cfam_1.0 Ensembl2837,394,983 - 37,536,352 (+)Ensembl
UMICH_Zoey_3.12836,873,260 - 37,016,307 (+)NCBI
UNSW_CanFamBas_1.02836,867,997 - 37,011,092 (+)NCBI
UU_Cfam_GSD_1.02837,122,813 - 37,266,172 (+)NCBI
Ptpre
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721310,001,450 - 10,130,358 (-)NCBI
SpeTri2.0NW_00493648615,484,304 - 15,559,842 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPRE
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14137,101,410 - 137,264,239 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114137,101,449 - 137,264,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214149,003,851 - 149,166,646 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PTPRE
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19120,511,812 - 120,691,820 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl9120,646,898 - 120,690,230 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604881,900,758 - 82,082,260 (+)NCBIVero_WHO_p1.0
Ptpre
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473718,977,142 - 19,129,112 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH44546  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,881,961 - 129,882,104UniSTSGRCh37
Build 3610129,771,951 - 129,772,094RGDNCBI36
Celera10123,553,443 - 123,553,586RGD
Cytogenetic Map10q26UniSTS
HuRef10123,456,676 - 123,456,819UniSTS
GeneMap99-GB4 RH Map10556.09UniSTS
SHGC-68389  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,785,256 - 129,785,481UniSTSGRCh37
Build 3610129,675,246 - 129,675,471RGDNCBI36
Celera10123,456,738 - 123,456,963RGD
Cytogenetic Map10q26UniSTS
HuRef10123,359,963 - 123,360,188UniSTS
SHGC-80969  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,796,144 - 129,796,416UniSTSGRCh37
Build 3610129,686,134 - 129,686,406RGDNCBI36
Celera10123,467,626 - 123,467,898RGD
Cytogenetic Map10q26UniSTS
HuRef10123,370,852 - 123,371,124UniSTS
TNG Radiation Hybrid Map1034924.0UniSTS
D10S1404E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,879,968 - 129,880,062UniSTSGRCh37
Build 3610129,769,958 - 129,770,052RGDNCBI36
Celera10123,551,447 - 123,551,541RGD
Cytogenetic Map10q26UniSTS
HuRef10123,454,680 - 123,454,774UniSTS
D10S1623  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,884,018 - 129,884,098UniSTSGRCh37
Build 3610129,774,008 - 129,774,088RGDNCBI36
Celera10123,555,493 - 123,555,573RGD
Cytogenetic Map10q26UniSTS
HuRef10123,458,727 - 123,458,807UniSTS
D10S2229  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,774,839 - 129,774,965UniSTSGRCh37
Build 3610129,664,829 - 129,664,955RGDNCBI36
Celera10123,446,321 - 123,446,447RGD
Cytogenetic Map10q26UniSTS
HuRef10123,349,617 - 123,349,743UniSTS
Whitehead-RH Map10662.3UniSTS
Whitehead-YAC Contig Map10 UniSTS
D10S1554  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,883,924 - 129,884,104UniSTSGRCh37
Build 3610129,773,914 - 129,774,094RGDNCBI36
Celera10123,555,399 - 123,555,579RGD
Cytogenetic Map10q26UniSTS
HuRef10123,458,633 - 123,458,813UniSTS
GeneMap99-GB4 RH Map10556.09UniSTS
Whitehead-RH Map10662.4UniSTS
Whitehead-YAC Contig Map10 UniSTS
D20S433  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,753,483 - 129,753,628UniSTSGRCh37
Build 3610129,643,473 - 129,643,618RGDNCBI36
Celera10123,424,958 - 123,425,103RGD
Cytogenetic Map10q26UniSTS
HuRef10123,328,255 - 123,328,400UniSTS
G19703  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,882,114 - 129,882,230UniSTSGRCh37
Build 3610129,772,104 - 129,772,220RGDNCBI36
Celera10123,553,596 - 123,553,712RGD
Cytogenetic Map10q26UniSTS
HuRef10123,456,829 - 123,456,945UniSTS
A001W02  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,882,114 - 129,882,230UniSTSGRCh37
Build 3610129,772,104 - 129,772,220RGDNCBI36
Celera10123,553,596 - 123,553,712RGD
Cytogenetic Map10q26UniSTS
HuRef10123,456,829 - 123,456,945UniSTS
GeneMap99-GB4 RH Map10556.09UniSTS
NCBI RH Map101382.8UniSTS
T15921  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,882,165 - 129,882,361UniSTSGRCh37
Build 3610129,772,155 - 129,772,351RGDNCBI36
Celera10123,553,647 - 123,553,843RGD
Cytogenetic Map10q26UniSTS
HuRef10123,456,880 - 123,457,076UniSTS
Whitehead-YAC Contig Map10 UniSTS
A008Y06  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,882,591 - 129,882,715UniSTSGRCh37
Build 3610129,772,581 - 129,772,705RGDNCBI36
Celera10123,554,070 - 123,554,194RGD
Cytogenetic Map10q26UniSTS
HuRef10123,457,304 - 123,457,428UniSTS
GeneMap99-GB4 RH Map10556.09UniSTS
NCBI RH Map101382.8UniSTS
PTPRE_4144  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3710129,883,207 - 129,884,122UniSTSGRCh37
Build 3610129,773,197 - 129,774,112RGDNCBI36
Celera10123,554,682 - 123,555,597RGD
HuRef10123,457,916 - 123,458,831UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
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Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5617
Count of miRNA genes:1230
Interacting mature miRNAs:1567
Transcripts:ENST00000254667, ENST00000306042, ENST00000419012, ENST00000430713, ENST00000442830, ENST00000455661, ENST00000463727, ENST00000467366, ENST00000471218, ENST00000479896, ENST00000487428, ENST00000492479, ENST00000495530
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 352 1046 524 45 1251 14 1190 69 976 55 94 885 37 714 741 2
Low 2074 1931 1142 522 680 396 2874 1922 2719 352 1327 652 135 490 1878 2
Below cutoff 6 11 56 52 19 52 286 195 21 10 35 47 169 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001316676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001316677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_130435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005252691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011539994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011539995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011539996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011539998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017016469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024448093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002956995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_002956996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA362195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF406557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ315969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ430580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK299498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL158166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL390236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE246451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI559814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI910569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM970048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ006544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU159075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU742614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX648180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D20432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA470230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA949010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  H17674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U36623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X54134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000254667   ⟹   ENSP00000254667
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10127,907,103 - 128,085,855 (+)Ensembl
RefSeq Acc Id: ENST00000306042   ⟹   ENSP00000303350
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,047,570 - 128,085,855 (+)Ensembl
RefSeq Acc Id: ENST00000442830   ⟹   ENSP00000410540
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10127,907,152 - 128,049,666 (+)Ensembl
RefSeq Acc Id: ENST00000455661   ⟹   ENSP00000416939
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10127,998,126 - 128,056,163 (+)Ensembl
RefSeq Acc Id: ENST00000463727
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,068,382 - 128,072,682 (+)Ensembl
RefSeq Acc Id: ENST00000467366   ⟹   ENSP00000474830
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,047,406 - 128,056,171 (+)Ensembl
RefSeq Acc Id: ENST00000471218   ⟹   ENSP00000474102
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10127,987,344 - 128,056,170 (+)Ensembl
RefSeq Acc Id: ENST00000479896   ⟹   ENSP00000473761
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,047,631 - 128,085,855 (+)Ensembl
RefSeq Acc Id: ENST00000487428
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,047,619 - 128,049,635 (+)Ensembl
RefSeq Acc Id: ENST00000492479
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,062,919 - 128,070,841 (+)Ensembl
RefSeq Acc Id: ENST00000495530   ⟹   ENSP00000475063
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl10128,047,629 - 128,070,375 (+)Ensembl
RefSeq Acc Id: NM_001316676   ⟹   NP_001303605
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,103 - 128,085,855 (+)NCBI
CHM1_110129,987,736 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001316677   ⟹   NP_001303606
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,987,280 - 128,085,855 (+)NCBI
CHM1_110130,067,954 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001323354   ⟹   NP_001310283
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,998,147 - 128,085,855 (+)NCBI
CHM1_110130,078,805 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001323355   ⟹   NP_001310284
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,103 - 128,085,855 (+)NCBI
CHM1_110129,987,736 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001323356   ⟹   NP_001310285
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,103 - 128,085,855 (+)NCBI
CHM1_110129,987,736 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001323357   ⟹   NP_001310286
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810128,047,612 - 128,085,855 (+)NCBI
CHM1_110130,128,226 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_006504   ⟹   NP_006495
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,103 - 128,085,855 (+)NCBI
GRCh3710129,705,325 - 129,884,180 (+)ENTREZGENE
Build 3610129,595,315 - 129,774,155 (+)NCBI Archive
HuRef10123,280,118 - 123,458,889 (+)ENTREZGENE
CHM1_110129,987,736 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: NM_130435   ⟹   NP_569119
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810128,047,612 - 128,085,855 (+)NCBI
GRCh3710129,705,325 - 129,884,180 (+)ENTREZGENE
Build 3610129,735,824 - 129,774,155 (+)NCBI Archive
HuRef10123,280,118 - 123,458,889 (+)ENTREZGENE
CHM1_110130,128,226 - 130,166,525 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005252691   ⟹   XP_005252748
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,987,280 - 128,084,250 (+)NCBI
GRCh3710129,705,325 - 129,884,180 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011539994   ⟹   XP_011538296
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,084,250 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011539995   ⟹   XP_011538297
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,085,855 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011539996   ⟹   XP_011538298
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,085,855 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011539998   ⟹   XP_011538300
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,069,685 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016467   ⟹   XP_016871956
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,085,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016468   ⟹   XP_016871957
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,056 - 128,085,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017016469   ⟹   XP_016871958
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,071,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024448092   ⟹   XP_024303860
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,053 - 128,085,852 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024448093   ⟹   XP_024303861
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,999,534 - 128,084,250 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002956995
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,076 - 128,085,855 (+)NCBI
Sequence:
RefSeq Acc Id: XR_002956996
RefSeq Status:
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810128,047,551 - 128,085,855 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001303605 (Get FASTA)   NCBI Sequence Viewer  
  NP_001303606 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310283 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310284 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310285 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310286 (Get FASTA)   NCBI Sequence Viewer  
  NP_006495 (Get FASTA)   NCBI Sequence Viewer  
  NP_569119 (Get FASTA)   NCBI Sequence Viewer  
  XP_005252748 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538296 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538297 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538298 (Get FASTA)   NCBI Sequence Viewer  
  XP_011538300 (Get FASTA)   NCBI Sequence Viewer  
  XP_016871956 (Get FASTA)   NCBI Sequence Viewer  
  XP_016871957 (Get FASTA)   NCBI Sequence Viewer  
  XP_016871958 (Get FASTA)   NCBI Sequence Viewer  
  XP_024303860 (Get FASTA)   NCBI Sequence Viewer  
  XP_024303861 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC50324 (Get FASTA)   NCBI Sequence Viewer  
  AAH50062 (Get FASTA)   NCBI Sequence Viewer  
  AAL01375 (Get FASTA)   NCBI Sequence Viewer  
  BAF83103 (Get FASTA)   NCBI Sequence Viewer  
  BAF84517 (Get FASTA)   NCBI Sequence Viewer  
  BAG61455 (Get FASTA)   NCBI Sequence Viewer  
  BAG62307 (Get FASTA)   NCBI Sequence Viewer  
  CAA38069 (Get FASTA)   NCBI Sequence Viewer  
  CAC86583 (Get FASTA)   NCBI Sequence Viewer  
  CAD23182 (Get FASTA)   NCBI Sequence Viewer  
  CAH10411 (Get FASTA)   NCBI Sequence Viewer  
  EAW49180 (Get FASTA)   NCBI Sequence Viewer  
  EAW49181 (Get FASTA)   NCBI Sequence Viewer  
  EAW49182 (Get FASTA)   NCBI Sequence Viewer  
  EAW49183 (Get FASTA)   NCBI Sequence Viewer  
  EAW49184 (Get FASTA)   NCBI Sequence Viewer  
  EAW49185 (Get FASTA)   NCBI Sequence Viewer  
  EAW49186 (Get FASTA)   NCBI Sequence Viewer  
  P23469 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_006495   ⟸   NM_006504
- Peptide Label: isoform 1 precursor
- UniProtKB: P23469 (UniProtKB/Swiss-Prot),   Q96P81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_569119   ⟸   NM_130435
- Peptide Label: isoform 2
- UniProtKB: P23469 (UniProtKB/Swiss-Prot),   A8K2Z9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005252748   ⟸   XM_005252691
- Peptide Label: isoform X6
- UniProtKB: P23469 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011538297   ⟸   XM_011539995
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_011538298   ⟸   XM_011539996
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011538296   ⟸   XM_011539994
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011538300   ⟸   XM_011539998
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: NP_001303605   ⟸   NM_001316676
- Peptide Label: isoform 3 precursor
- UniProtKB: P23469 (UniProtKB/Swiss-Prot),   Q96P81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001310284   ⟸   NM_001323355
- Peptide Label: isoform 4
- Sequence:
RefSeq Acc Id: NP_001310285   ⟸   NM_001323356
- Peptide Label: isoform 5
- Sequence:
RefSeq Acc Id: NP_001303606   ⟸   NM_001316677
- Peptide Label: isoform 1 precursor
- UniProtKB: P23469 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001310283   ⟸   NM_001323354
- Peptide Label: isoform 1 precursor
- UniProtKB: P23469 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001310286   ⟸   NM_001323357
- Peptide Label: isoform 6
- Sequence:
RefSeq Acc Id: XP_016871956   ⟸   XM_017016467
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016871958   ⟸   XM_017016469
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_016871957   ⟸   XM_017016468
- Peptide Label: isoform X6
- UniProtKB: P23469 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_024303860   ⟸   XM_024448092
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_024303861   ⟸   XM_024448093
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: ENSP00000303350   ⟸   ENST00000306042
RefSeq Acc Id: ENSP00000254667   ⟸   ENST00000254667
RefSeq Acc Id: ENSP00000473761   ⟸   ENST00000479896
RefSeq Acc Id: ENSP00000474830   ⟸   ENST00000467366
RefSeq Acc Id: ENSP00000416939   ⟸   ENST00000455661
RefSeq Acc Id: ENSP00000475063   ⟸   ENST00000495530
RefSeq Acc Id: ENSP00000410540   ⟸   ENST00000442830
RefSeq Acc Id: ENSP00000474102   ⟸   ENST00000471218
Promoters
RGD ID:7218997
Promoter ID:EPDNEW_H15245
Type:initiation region
Name:PTPRE_3
Description:protein tyrosine phosphatase, receptor type E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15246  EPDNEW_H15247  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,907,103 - 127,907,163EPDNEW
RGD ID:7219001
Promoter ID:EPDNEW_H15246
Type:single initiation site
Name:PTPRE_1
Description:protein tyrosine phosphatase, receptor type E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15245  EPDNEW_H15247  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810127,911,713 - 127,911,773EPDNEW
RGD ID:7219003
Promoter ID:EPDNEW_H15247
Type:initiation region
Name:PTPRE_2
Description:protein tyrosine phosphatase, receptor type E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H15245  EPDNEW_H15246  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3810128,047,617 - 128,047,677EPDNEW
RGD ID:6788031
Promoter ID:HG_KWN:11642
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   NB4
Transcripts:ENST00000254667,   OTTHUMT00000050994,   UC009YAT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3610129,595,056 - 129,595,556 (+)MPROMDB
RGD ID:6788029
Promoter ID:HG_KWN:11646
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000306042,   OTTHUMT00000050989,   OTTHUMT00000050992,   OTTHUMT00000050996,   OTTHUMT00000050997
Position:
Human AssemblyChrPosition (strand)Source
Build 3610129,735,141 - 129,735,902 (+)MPROMDB
RGD ID:6814490
Promoter ID:HG_XEF:1163
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:NB4
Transcripts:NM_001045177,   NM_001105088
Position:
Human AssemblyChrPosition (strand)Source
Build 3610129,737,406 - 129,737,906 (+)MPROMDB
RGD ID:6788030
Promoter ID:HG_KWN:11647
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000050998
Position:
Human AssemblyChrPosition (strand)Source
Build 3610129,750,656 - 129,751,562 (+)MPROMDB
RGD ID:6788027
Promoter ID:HG_KWN:11648
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000050988
Position:
Human AssemblyChrPosition (strand)Source
Build 3610129,756,066 - 129,758,507 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10q25.2-26.3(chr10:111313099-133620674)x3 copy number gain See cases [RCV000051218] Chr10:111313099..133620674 [GRCh38]
Chr10:113072857..135434178 [GRCh37]
Chr10:113062847..135284168 [NCBI36]
Chr10:10q25.2-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:123307835-133620674)x1 copy number loss See cases [RCV000051150] Chr10:123307835..133620674 [GRCh38]
Chr10:125067351..135434178 [GRCh37]
Chr10:125057341..135284168 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.12-26.3(chr10:120454430-133620674)x1 copy number loss See cases [RCV000051103] Chr10:120454430..133620674 [GRCh38]
Chr10:122213942..135434178 [GRCh37]
Chr10:122203932..135284168 [NCBI36]
Chr10:10q26.12-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:122265252-133620674)x1 copy number loss See cases [RCV000051069] Chr10:122265252..133620674 [GRCh38]
Chr10:124024767..135434178 [GRCh37]
Chr10:124014757..135284168 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.2(chr10:127435985-127992839)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051655]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051655]|See cases [RCV000051655] Chr10:127435985..127992839 [GRCh38]
Chr10:129234249..129791103 [GRCh37]
Chr10:129124239..129681093 [NCBI36]
Chr10:10q26.2
uncertain significance
GRCh38/hg38 10q26.2-26.3(chr10:127852284-129780378)x3 copy number gain See cases [RCV000051656] Chr10:127852284..129780378 [GRCh38]
Chr10:129650548..131578642 [GRCh37]
Chr10:129540538..131468632 [NCBI36]
Chr10:10q26.2-26.3
uncertain significance
GRCh38/hg38 10q26.2-26.3(chr10:126256585-133613938)x1 copy number loss See cases [RCV000052612] Chr10:126256585..133613938 [GRCh38]
Chr10:127945154..135427442 [GRCh37]
Chr10:127935144..135277432 [NCBI36]
Chr10:10q26.2-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:127500483-133620674)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052613]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052613]|See cases [RCV000052613] Chr10:127500483..133620674 [GRCh38]
Chr10:129298747..135434178 [GRCh37]
Chr10:129188737..135284168 [NCBI36]
Chr10:10q26.2-26.3
pathogenic
GRCh38/hg38 10q26.13-26.2(chr10:122973296-128210291)x1 copy number loss See cases [RCV000052610] Chr10:122973296..128210291 [GRCh38]
Chr10:124732812..130008555 [GRCh37]
Chr10:124722802..129898545 [NCBI36]
Chr10:10q26.13-26.2
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:123580320-133558988)x1 copy number loss See cases [RCV000052611] Chr10:123580320..133558988 [GRCh38]
Chr10:125339836..135372492 [GRCh37]
Chr10:125329826..135222482 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q23.31-26.3(chr10:91048545-133620674)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053560]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053560]|See cases [RCV000053560] Chr10:91048545..133620674 [GRCh38]
Chr10:92808302..135434178 [GRCh37]
Chr10:92798282..135284168 [NCBI36]
Chr10:10q23.31-26.3
pathogenic
GRCh38/hg38 10q24.31-26.3(chr10:100194215-132432797)x3 copy number gain See cases [RCV000053564] Chr10:100194215..132432797 [GRCh38]
Chr10:101953972..134246301 [GRCh37]
Chr10:101943962..134096291 [NCBI36]
Chr10:10q24.31-26.3
pathogenic
GRCh38/hg38 10q25.1-26.3(chr10:106925303-133620815)x3 copy number gain See cases [RCV000053588] Chr10:106925303..133620815 [GRCh38]
Chr10:108685061..135434319 [GRCh37]
Chr10:108675051..135284309 [NCBI36]
Chr10:10q25.1-26.3
pathogenic
GRCh38/hg38 10q26.11-26.3(chr10:117866565-133554210)x3 copy number gain See cases [RCV000053589] Chr10:117866565..133554210 [GRCh38]
Chr10:119626076..135367714 [GRCh37]
Chr10:119616066..135217704 [NCBI36]
Chr10:10q26.11-26.3
pathogenic
NM_006504.4(PTPRE):c.32G>A (p.Gly11Asp) single nucleotide variant Malignant melanoma [RCV000068854]|Malignant melanoma of skin [RCV000149739] Chr10:128040913 [GRCh38]
Chr10:129839177 [GRCh37]
Chr10:129729167 [NCBI36]
Chr10:10q26.2
not provided
NM_006504.4(PTPRE):c.930C>T (p.Pro310=) single nucleotide variant Malignant melanoma [RCV000068855] Chr10:128068209 [GRCh38]
Chr10:129866473 [GRCh37]
Chr10:129756463 [NCBI36]
Chr10:10q26.2
not provided
NM_006504.4(PTPRE):c.109+1434A>T single nucleotide variant Lung cancer [RCV000108791] Chr10:128042424 [GRCh38]
Chr10:129840688 [GRCh37]
Chr10:10q26.2
uncertain significance
NM_006504.4:c.11G>A single nucleotide variant Malignant melanoma of skin [RCV000149738] Chr10:10q26.2 not provided
NM_006504.4(PTPRE):c.1599+12C>T single nucleotide variant Malignant melanoma of skin [RCV000149741] Chr10:128073483 [GRCh38]
Chr10:129871747 [GRCh37]
not provided
GRCh38/hg38 10q25.1-26.3(chr10:108102587-133620674)x3 copy number gain See cases [RCV000133688] Chr10:108102587..133620674 [GRCh38]
Chr10:109862345..135434178 [GRCh37]
Chr10:109852335..135284168 [NCBI36]
Chr10:10q25.1-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:125657472-133620674)x1 copy number loss See cases [RCV000133741] Chr10:125657472..133620674 [GRCh38]
Chr10:127346041..135434178 [GRCh37]
Chr10:127336031..135284168 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:126730896-133620609)x1 copy number loss See cases [RCV000134040] Chr10:126730896..133620609 [GRCh38]
Chr10:128419465..135434113 [GRCh37]
Chr10:128409455..135284103 [NCBI36]
Chr10:10q26.2-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:127640489-132776585)x1 copy number loss See cases [RCV000135728] Chr10:127640489..132776585 [GRCh38]
Chr10:129438753..134590089 [GRCh37]
Chr10:129328743..134440079 [NCBI36]
Chr10:10q26.2-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:124473108-133620609)x1 copy number loss See cases [RCV000136028] Chr10:124473108..133620609 [GRCh38]
Chr10:126161677..135434113 [GRCh37]
Chr10:126151667..135284103 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:124834858-133622588)x1 copy number loss See cases [RCV000137653] Chr10:124834858..133622588 [GRCh38]
Chr10:126523427..135436092 [GRCh37]
Chr10:126513417..135286082 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:127849717-133622588)x1 copy number loss See cases [RCV000138160] Chr10:127849717..133622588 [GRCh38]
Chr10:129647981..135436092 [GRCh37]
Chr10:129537971..135286082 [NCBI36]
Chr10:10q26.2-26.3
pathogenic|likely benign
GRCh38/hg38 10q24.31-26.3(chr10:100600492-133622588)x3 copy number gain See cases [RCV000137747] Chr10:100600492..133622588 [GRCh38]
Chr10:102360249..135436092 [GRCh37]
Chr10:102350239..135286082 [NCBI36]
Chr10:10q24.31-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:122881207-133620609)x1 copy number loss See cases [RCV000138435] Chr10:122881207..133620609 [GRCh38]
Chr10:124640723..135434113 [GRCh37]
Chr10:124630713..135284103 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.12-26.3(chr10:120970558-133622588)x1 copy number loss See cases [RCV000139344] Chr10:120970558..133622588 [GRCh38]
Chr10:122730071..135436092 [GRCh37]
Chr10:122720061..135286082 [NCBI36]
Chr10:10q26.12-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:125316124-130269667)x1 copy number loss See cases [RCV000139127] Chr10:125316124..130269667 [GRCh38]
Chr10:127004693..132067931 [GRCh37]
Chr10:126994683..131957921 [NCBI36]
Chr10:10q26.13-26.3
likely benign
GRCh38/hg38 10q26.13-26.3(chr10:125021995-133620609)x1 copy number loss See cases [RCV000139588] Chr10:125021995..133620609 [GRCh38]
Chr10:126710564..135434113 [GRCh37]
Chr10:126700554..135284103 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:125452905-133785874)x3 copy number gain See cases [RCV000141337] Chr10:125452905..133785874 [GRCh38]
Chr10:127141474..135523199 [GRCh37]
Chr10:127131464..135373189 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:127664168-133622588)x3 copy number gain See cases [RCV000140974] Chr10:127664168..133622588 [GRCh38]
Chr10:129462432..135436092 [GRCh37]
Chr10:129352422..135286082 [NCBI36]
Chr10:10q26.2-26.3
likely pathogenic
GRCh38/hg38 10q26.11-26.3(chr10:119707856-133613639)x3 copy number gain See cases [RCV000142005] Chr10:119707856..133613639 [GRCh38]
Chr10:121467368..135427143 [GRCh37]
Chr10:121457358..135277133 [NCBI36]
Chr10:10q26.11-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:127507503-129782976)x3 copy number gain See cases [RCV000141892] Chr10:127507503..129782976 [GRCh38]
Chr10:129305767..131581240 [GRCh37]
Chr10:129195757..131471230 [NCBI36]
Chr10:10q26.2-26.3
uncertain significance
GRCh38/hg38 10q26.13-26.3(chr10:121588992-133620674)x1 copy number loss See cases [RCV000142441] Chr10:121588992..133620674 [GRCh38]
Chr10:123348506..135434178 [GRCh37]
Chr10:123338496..135284168 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:121918547-133620674)x1 copy number loss See cases [RCV000142737] Chr10:121918547..133620674 [GRCh38]
Chr10:123678062..135434178 [GRCh37]
Chr10:123668052..135284168 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:127435985-133622588)x1 copy number loss See cases [RCV000143241] Chr10:127435985..133622588 [GRCh38]
Chr10:129234249..135436092 [GRCh37]
Chr10:129124239..135286082 [NCBI36]
Chr10:10q26.2-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:123986772-133613639)x1 copy number loss See cases [RCV000143623] Chr10:123986772..133613639 [GRCh38]
Chr10:125746288..135427143 [GRCh37]
Chr10:125736278..135277133 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.13-26.3(chr10:123576393-133613639)x1 copy number loss See cases [RCV000143544] Chr10:123576393..133613639 [GRCh38]
Chr10:125335909..135427143 [GRCh37]
Chr10:125325899..135277133 [NCBI36]
Chr10:10q26.13-26.3
pathogenic
GRCh38/hg38 10q26.2-26.3(chr10:126794646-133613639)x1 copy number loss See cases [RCV000143615] Chr10:126794646..133613639 [GRCh38]
Chr10:128483215..135427143 [GRCh37]
Chr10:128473205..135277133 [NCBI36]
Chr10:10q26.2-26.3
pathogenic
NM_006504.4(PTPRE):c.598G>A (p.Glu200Lys) single nucleotide variant Malignant melanoma of skin [RCV000149740] Chr10:128061688 [GRCh38]
Chr10:129859952 [GRCh37]
not provided
GRCh37/hg19 10q26.13-26.3(chr10:123731209-135353867)x1 copy number loss See cases [RCV000203440] Chr10:123731209..135353867 [GRCh37]
Chr10:10q26.13-26.3
pathogenic|likely pathogenic
GRCh37/hg19 10q24.32-26.3(chr10:103288313-135512075)x3 copy number gain See cases [RCV000240457] Chr10:103288313..135512075 [GRCh37]
Chr10:10q24.32-26.3
pathogenic
GRCh37/hg19 10q26.12-26.3(chr10:122125760-135062972)x3 copy number gain See cases [RCV000449169] Chr10:122125760..135062972 [GRCh37]
Chr10:10q26.12-26.3
likely pathogenic
GRCh37/hg19 10q26.13-26.3(chr10:124147428-135370736)x1 copy number loss See cases [RCV000449336] Chr10:124147428..135370736 [GRCh37]
Chr10:10q26.13-26.3
pathogenic
GRCh37/hg19 10q24.32-26.3(chr10:104633712-135427143)x3 copy number gain See cases [RCV000449386] Chr10:104633712..135427143 [GRCh37]
Chr10:10q24.32-26.3
pathogenic
GRCh37/hg19 10q26.12-26.3(chr10:122343861-135427143)x1 copy number loss See cases [RCV000446095] Chr10:122343861..135427143 [GRCh37]
Chr10:10q26.12-26.3
pathogenic
GRCh37/hg19 10q24.2-26.3(chr10:100780957-135427143)x3 copy number gain See cases [RCV000446733] Chr10:100780957..135427143 [GRCh37]
Chr10:10q24.2-26.3
pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:128465436-135427143)x1 copy number loss See cases [RCV000447132] Chr10:128465436..135427143 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:129825453-135427143)x1 copy number loss See cases [RCV000511570] Chr10:129825453..135427143 [GRCh37]
Chr10:10q26.2-26.3
likely pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:127658004-135427143)x1 copy number loss See cases [RCV000511813] Chr10:127658004..135427143 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
GRCh37/hg19 10q25.1-26.3(chr10:106003533-135427143)x3 copy number gain See cases [RCV000510813] Chr10:106003533..135427143 [GRCh37]
Chr10:10q25.1-26.3
pathogenic
GRCh37/hg19 10q23.32-26.3(chr10:93283493-135427143)x3 copy number gain See cases [RCV000510972] Chr10:93283493..135427143 [GRCh37]
Chr10:10q23.32-26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10q11.21-26.3(chr10:42347406-135534747)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626438] Chr10:42347406..135534747 [GRCh37]
Chr10:10q11.21-26.3
drug response
GRCh37/hg19 10q26.2-26.3(chr10:129007673-135427143)x3 copy number gain See cases [RCV000512398] Chr10:129007673..135427143 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10q26.13-26.3(chr10:127375792-135427143)x1 copy number loss not provided [RCV000683283] Chr10:127375792..135427143 [GRCh37]
Chr10:10q26.13-26.3
pathogenic
GRCh37/hg19 10q26.11-26.3(chr10:121269222-135427143)x3 copy number gain not provided [RCV000683288] Chr10:121269222..135427143 [GRCh37]
Chr10:10q26.11-26.3
pathogenic
GRCh37/hg19 10q26.13-26.3(chr10:125450893-135427143)x1 copy number loss not provided [RCV000683285] Chr10:125450893..135427143 [GRCh37]
Chr10:10q26.13-26.3
pathogenic
GRCh37/hg19 10q26.12-26.3(chr10:123019239-135427143)x1 copy number loss not provided [RCV000683286] Chr10:123019239..135427143 [GRCh37]
Chr10:10q26.12-26.3
pathogenic
GRCh37/hg19 10q24.33-26.3(chr10:105613040-135427143)x3 copy number gain not provided [RCV000683290] Chr10:105613040..135427143 [GRCh37]
Chr10:10q24.33-26.3
pathogenic
GRCh37/hg19 10q26.12-26.3(chr10:122509781-135427143)x1 copy number loss not provided [RCV000683287] Chr10:122509781..135427143 [GRCh37]
Chr10:10q26.12-26.3
pathogenic
GRCh37/hg19 10q23.33-26.3(chr10:94346520-135427143)x3 copy number gain not provided [RCV000683291] Chr10:94346520..135427143 [GRCh37]
Chr10:10q23.33-26.3
pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:129728658-131585151)x3 copy number gain not provided [RCV000683268] Chr10:129728658..131585151 [GRCh37]
Chr10:10q26.2-26.3
likely benign
GRCh37/hg19 10q26.12-26.3(chr10:122443197-135477883)x1 copy number loss not provided [RCV000737305] Chr10:122443197..135477883 [GRCh37]
Chr10:10q26.12-26.3
pathogenic
GRCh37/hg19 10q26.2(chr10:129454892-129830216)x1 copy number loss not provided [RCV000737322] Chr10:129454892..129830216 [GRCh37]
Chr10:10q26.2
benign
GRCh37/hg19 10q26.2-26.3(chr10:129454892-135447971)x1 copy number loss not provided [RCV000737323] Chr10:129454892..135447971 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10q26.2(chr10:129829406-129830593)x1 copy number loss not provided [RCV000737324] Chr10:129829406..129830593 [GRCh37]
Chr10:10q26.2
benign
GRCh37/hg19 10q26.2-26.3(chr10:129830593-132635031)x1 copy number loss not provided [RCV000737325] Chr10:129830593..132635031 [GRCh37]
Chr10:10q26.2-26.3
benign
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:129009772-135427143)x1 copy number loss not provided [RCV001006362] Chr10:129009772..135427143 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10q25.1-26.3(chr10:110022170-135439095) copy number gain not provided [RCV000767665] Chr10:110022170..135439095 [GRCh37]
Chr10:10q25.1-26.3
pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:129381095-135427143)x1 copy number loss not provided [RCV001006364] Chr10:129381095..135427143 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10q26.13-26.3(chr10:124988334-135427143)x3 copy number gain not provided [RCV000848791] Chr10:124988334..135427143 [GRCh37]
Chr10:10q26.13-26.3
pathogenic
GRCh37/hg19 10q25.2-26.3(chr10:114544537-135427143)x3 copy number gain not provided [RCV000847820] Chr10:114544537..135427143 [GRCh37]
Chr10:10q25.2-26.3
pathogenic
GRCh37/hg19 10q26.11-26.3(chr10:119996339-135427143)x3 copy number gain not provided [RCV001006356] Chr10:119996339..135427143 [GRCh37]
Chr10:10q26.11-26.3
pathogenic
GRCh37/hg19 10q26.2(chr10:129297102-129802813)x3 copy number gain not provided [RCV000846591] Chr10:129297102..129802813 [GRCh37]
Chr10:10q26.2
uncertain significance
GRCh37/hg19 10q25.3-26.3(chr10:118247181-135435319)x3 copy number gain not provided [RCV001537903] Chr10:118247181..135435319 [GRCh37]
Chr10:10q25.3-26.3
pathogenic
GRCh37/hg19 10q26.2(chr10:129303032-129814581)x3 copy number gain not provided [RCV001259084] Chr10:129303032..129814581 [GRCh37]
Chr10:10q26.2
uncertain significance
GRCh37/hg19 10q26.2-26.3(chr10:129031265-135427143)x1 copy number loss not provided [RCV001259085] Chr10:129031265..135427143 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10q26.2-26.3(chr10:129483682-135434178) copy number loss Global developmental delay [RCV001352664] Chr10:129483682..135434178 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
Single allele deletion Chromosome 10q26 deletion syndrome [RCV001391670] Chr10:127548166..135440251 [GRCh37]
Chr10:10q26.2-26.3
pathogenic
GRCh37/hg19 10q26.12-26.3(chr10:122785023-135457222)x1 copy number loss See cases [RCV001526488] Chr10:122785023..135457222 [GRCh37]
Chr10:10q26.12-26.3
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9669 AgrOrtholog
COSMIC PTPRE COSMIC
Ensembl Genes ENSG00000132334 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000254667 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000303350 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000410540 UniProtKB/TrEMBL
  ENSP00000416939 UniProtKB/TrEMBL
  ENSP00000473761 UniProtKB/TrEMBL
  ENSP00000474102 UniProtKB/TrEMBL
  ENSP00000474830 UniProtKB/TrEMBL
  ENSP00000475063 UniProtKB/TrEMBL
Ensembl Transcript ENST00000254667 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000306042 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000442830 UniProtKB/TrEMBL
  ENST00000455661 UniProtKB/TrEMBL
  ENST00000467366 UniProtKB/TrEMBL
  ENST00000471218 UniProtKB/TrEMBL
  ENST00000479896 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000495530 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000132334 GTEx
HGNC ID HGNC:9669 ENTREZGENE
Human Proteome Map PTPRE Human Proteome Map
InterPro Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPase_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_rcpt_a/e-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:5791 UniProtKB/Swiss-Prot
NCBI Gene 5791 ENTREZGENE
OMIM 600926 OMIM
Pfam Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34014 PharmGKB
PIRSF PTPR_alpha_epsilon UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K2Z9 ENTREZGENE, UniProtKB/TrEMBL
  P23469 ENTREZGENE, UniProtKB/Swiss-Prot
  Q5VWH5_HUMAN UniProtKB/TrEMBL
  Q5VWH6_HUMAN UniProtKB/TrEMBL
  Q8TE48_HUMAN UniProtKB/TrEMBL
  Q96P81 ENTREZGENE, UniProtKB/TrEMBL
  S4R2Y5_HUMAN UniProtKB/TrEMBL
  S4R3B0_HUMAN UniProtKB/TrEMBL
  S4R3X3_HUMAN UniProtKB/TrEMBL
  S4R448_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q13345 UniProtKB/Swiss-Prot
  Q5VWH3 UniProtKB/Swiss-Prot
  Q5VWH4 UniProtKB/Swiss-Prot
  Q96KQ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-19 PTPRE  protein tyrosine phosphatase receptor type E    protein tyrosine phosphatase, receptor type E  Symbol and/or name change 5135510 APPROVED
2016-01-12 PTPRE  protein tyrosine phosphatase, receptor type E    protein tyrosine phosphatase, receptor type, E  Symbol and/or name change 5135510 APPROVED
2011-08-17 PTPRE  protein tyrosine phosphatase, receptor type, E  PTPRE  protein tyrosine phosphatase, receptor type, E  Symbol and/or name change 5135510 APPROVED