AKR1D1P1 (aldo-keto reductase family 1 member D1 pseudogene 1) - Rat Genome Database

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Gene: AKR1D1P1 (aldo-keto reductase family 1 member D1 pseudogene 1) Homo sapiens
Analyze
Symbol: AKR1D1P1
Name: aldo-keto reductase family 1 member D1 pseudogene 1
RGD ID: 1345885
HGNC Page HGNC:11288
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AKR1D1P; aldo-keto reductase family 1, member D1 pseudogene 1; SRD5BP1; steroid-5-beta-reductase, beta polypeptide pseudogene 1
Related Functional Gene: AKR1D1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,519,548 - 167,536,087 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,519,536 - 167,520,586 (+)EnsemblGRCh38hg38GRCh38
GRCh371167,488,785 - 167,505,324 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,755,400 - 165,756,447 (+)NCBINCBI36Build 36hg18NCBI36
Celera1140,598,070 - 140,614,609 (+)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1138,734,820 - 138,751,357 (+)NCBIHuRef
CHM1_11168,911,106 - 168,927,651 (+)NCBICHM1_1
T2T-CHM13v2.01166,870,999 - 166,887,541 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10343119   PMID:11342103  


Genomics

Variants

.
Variants in AKR1D1P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:154
Interacting mature miRNAs:158
Transcripts:ENST00000457236
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
WI-15523  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371167,490,943 - 167,491,050UniSTSGRCh37
Build 361165,757,567 - 165,757,674RGDNCBI36
Celera1140,600,226 - 140,600,333RGD
Cytogenetic Map1q24UniSTS
HuRef1138,736,976 - 138,737,083UniSTS
GeneMap99-GB4 RH Map1605.8UniSTS
GeneMap99-GB4 RH Map1605.9UniSTS
Whitehead-RH Map1752.5UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 11 20 6 55 3 5 4 7 1 1
Below cutoff 467 718 215 70 743 51 641 304 658 44 195 314 19 165 449

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000457236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1167,519,536 - 167,520,586 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AKR1D1P1 COSMIC
Ensembl Genes ENSG00000227776 Ensembl
GTEx ENSG00000227776 GTEx
HGNC ID HGNC:11288 ENTREZGENE
Human Proteome Map AKR1D1P1 Human Proteome Map
NCBI Gene 80701 ENTREZGENE
PharmGKB PA36115 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-07 AKR1D1P1  aldo-keto reductase family 1 member D1 pseudogene 1    aldo-keto reductase family 1, member D1 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-07-27 AKR1D1P1  aldo-keto reductase family 1, member D1 pseudogene 1  AKR1D1P  aldo-keto reductase family 1, member D1 (delta 4-3-ketosteroid-5-beta-reductase) pseudogene  Symbol and/or name change 5135510 APPROVED