ATP5MF (ATP synthase membrane subunit f) - Rat Genome Database

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Gene: ATP5MF (ATP synthase membrane subunit f) Homo sapiens
Analyze
Symbol: ATP5MF
Name: ATP synthase membrane subunit f
RGD ID: 1345847
HGNC Page HGNC:848
Description: Contributes to proton-transporting ATP synthase activity, rotational mechanism. Involved in proton motive force-driven mitochondrial ATP synthesis. Located in mitochondrion and nuclear membrane. Part of mitochondrial proton-transporting ATP synthase complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: ATP synthase f chain, mitochondrial; ATP synthase subunit f, mitochondrial; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit f, isoform 2; ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2; ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2; ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2; ATP5J2; ATP5JL; F1F0-type ATPase subunit f; F1Fo-ATP synthase complex Fo membrane domain f subunit; F1Fo-ATPase synthase f subunit
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: AL359692.1   ATP5MFP1   ATP5MFP2   ATP5MFP3   ATP5MFP4   ATP5MFP5   ATP5MFP6   ATP5MFP7  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,458,195 - 99,466,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,448,475 - 99,466,186 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,055,818 - 99,063,790 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,893,720 - 98,901,744 (-)NCBINCBI36Build 36hg18NCBI36
Build 34798,700,435 - 98,708,459NCBI
Celera793,789,985 - 93,798,009 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,692,453 - 93,700,497 (-)NCBIHuRef
CHM1_1798,985,884 - 98,993,924 (-)NCBICHM1_1
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-dexrazoxane  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
amitrole  (ISO)
ampicillin  (ISO)
aristolochic acid A  (EXP)
Aroclor 1254  (ISO)
atrazine  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
caffeine  (EXP)
chloropicrin  (EXP)
clobetasol  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (EXP)
cyclosporin A  (EXP)
dexamethasone  (EXP)
dibutyl phthalate  (ISO)
diethylstilbestrol  (EXP)
dimethyl sulfoxide  (EXP)
diuron  (EXP)
doxorubicin  (EXP)
epoxiconazole  (ISO)
folic acid  (ISO)
fructose  (ISO)
fulvestrant  (EXP)
gentamycin  (ISO)
glycidyl methacrylate  (EXP)
hydrogen sulfide  (ISO)
indometacin  (EXP)
isotretinoin  (EXP)
ivermectin  (EXP)
lamivudine  (ISO)
lipopolysaccharide  (EXP)
methimazole  (ISO)
methyl methanesulfonate  (EXP)
metronidazole  (ISO)
neomycin  (ISO)
niclosamide  (EXP)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
Propiverine  (ISO)
quercetin  (ISO)
sodium arsenite  (EXP)
streptozocin  (ISO)
sulfadimethoxine  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP,ISO)
tolcapone  (ISO)
trichloroethene  (ISO)
triptonide  (ISO)
tungsten  (ISO)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (EXP)
vanadium atom  (EXP)
vanadium(0)  (EXP)
vancomycin  (ISO)
vincaleukoblastine  (EXP)
vinclozolin  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. Mao M, etal., Proc Natl Acad Sci U S A 1998 Jul 7;95(14):8175-80.
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:4517936   PMID:8125298   PMID:9461222   PMID:9834036   PMID:11042152   PMID:11959398   PMID:12110673   PMID:12471886   PMID:12477932   PMID:12628343   PMID:12690205   PMID:12745923  
PMID:14702039   PMID:14749816   PMID:15146197   PMID:15489334   PMID:16169070   PMID:16344560   PMID:16712791   PMID:17314511   PMID:17342744   PMID:18505769   PMID:18596870   PMID:19064571  
PMID:20877624   PMID:21150319   PMID:21630459   PMID:21873635   PMID:22939629   PMID:23376485   PMID:24244333   PMID:24981860   PMID:25852190   PMID:25963833   PMID:26297831   PMID:26344197  
PMID:26496610   PMID:26618866   PMID:26972000   PMID:27025967   PMID:27432908   PMID:27499296   PMID:29128334   PMID:29180619   PMID:29346117   PMID:29507755   PMID:29509190   PMID:29845934  
PMID:30033366   PMID:30097533   PMID:30196744   PMID:30455355   PMID:30462309   PMID:30463901   PMID:30833792   PMID:31073040   PMID:31182584   PMID:31478661   PMID:31527615   PMID:31536960  
PMID:31586073   PMID:31980649   PMID:32129710   PMID:32203420   PMID:32653453   PMID:32707033   PMID:32807901   PMID:33567341   PMID:33929490   PMID:34373451   PMID:34709727   PMID:35253629  
PMID:35256949   PMID:35439318   PMID:35914814   PMID:35944360   PMID:36042349   PMID:36273042   PMID:36490346   PMID:36526897   PMID:36929488   PMID:37616343   PMID:37827155   PMID:38113892  


Genomics

Comparative Map Data
ATP5MF
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38799,458,195 - 99,466,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl799,448,475 - 99,466,186 (-)EnsemblGRCh38hg38GRCh38
GRCh37799,055,818 - 99,063,790 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36798,893,720 - 98,901,744 (-)NCBINCBI36Build 36hg18NCBI36
Build 34798,700,435 - 98,708,459NCBI
Celera793,789,985 - 93,798,009 (-)NCBICelera
Cytogenetic Map7q22.1NCBI
HuRef793,692,453 - 93,700,497 (-)NCBIHuRef
CHM1_1798,985,884 - 98,993,924 (-)NCBICHM1_1
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)NCBI
Atp5mf
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395145,120,514 - 145,128,351 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5145,120,508 - 145,128,872 (-)EnsemblGRCm39 Ensembl
GRCm385145,183,704 - 145,191,541 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5145,183,698 - 145,192,062 (-)EnsemblGRCm38mm10GRCm38
MGSCv375145,944,575 - 145,952,461 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365145,437,233 - 145,445,119 (-)NCBIMGSCv36mm8
Celera5142,175,946 - 142,183,828 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map585.09NCBI
Atp5mf
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81214,535,435 - 14,542,007 (+)NCBIGRCr8
mRatBN7.2129,421,665 - 9,428,236 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,421,579 - 9,428,236 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,226,908 - 10,233,415 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01210,850,112 - 10,856,619 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,873,537 - 9,880,044 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01211,191,799 - 11,198,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1211,191,812 - 11,198,369 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01213,260,901 - 13,267,471 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,735,171 - 9,741,496 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1211,226,797 - 11,233,350 (+)NCBICelera
Cytogenetic Map12p11NCBI
Atp5mf
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546015,129,651 - 15,136,722 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546015,129,651 - 15,136,722 (-)NCBIChiLan1.0ChiLan1.0
ATP5MF
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26117,315,497 - 117,329,997 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17165,580,132 - 165,593,761 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0791,431,277 - 91,439,423 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17104,933,594 - 104,941,922 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7104,933,594 - 104,941,921 (-)Ensemblpanpan1.1panPan2
LOC102151856
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11549,438,852 - 49,439,253 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1549,782,482 - 49,782,881 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01550,115,350 - 50,115,749 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl610,129,341 - 10,136,537 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1550,115,464 - 50,115,730 (-)EnsemblROS_Cfam_1.0 Ensembl
Atp5mf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344138,219,493 - 138,228,508 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367501,716,757 - 1,725,727 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367501,716,752 - 1,725,700 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP5MF
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.136,389,338 - 6,396,960 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.236,655,564 - 6,667,124 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP5MF
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12813,699,537 - 13,707,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660702,596,972 - 2,604,989 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp5mf
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474032,878,119 - 32,885,814 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474032,878,119 - 32,885,907 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATP5MF
2 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q21.3-22.1(chr7:98288474-101259804)x3 copy number gain See cases [RCV000053573] Chr7:98288474..101259804 [GRCh38]
Chr7:97917786..100903085 [GRCh37]
Chr7:97755722..100689805 [NCBI36]
Chr7:7q21.3-22.1		 pathogenic
GRCh38/hg38 7q22.1(chr7:99219420-100902269)x1 copy number loss See cases [RCV000054154] Chr7:99219420..100902269 [GRCh38]
Chr7:98817043..100499889 [GRCh37]
Chr7:98654979..100337825 [NCBI36]
Chr7:7q22.1		 pathogenic
NM_001003713.2(ATP5J2):c.181A>G (p.Thr61Ala) single nucleotide variant Lung cancer [RCV000106732] Chr7:99459204 [GRCh38]
Chr7:99056827 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q22.1(chr7:99195836-102258175)x1 copy number loss See cases [RCV000135782] Chr7:99195836..102258175 [GRCh38]
Chr7:98793459..101718950 [GRCh37]
Chr7:98631395..101688175 [NCBI36]
Chr7:7q22.1		 pathogenic|uncertain significance
GRCh38/hg38 7q22.1(chr7:99195836-100348063)x3 copy number gain See cases [RCV000135630] Chr7:99195836..100348063 [GRCh38]
Chr7:98793459..99945686 [GRCh37]
Chr7:98631395..99783622 [NCBI36]
Chr7:7q22.1		 likely benign
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh37/hg19 7q22.1(chr7:98985840-99171421)x3 copy number gain See cases [RCV000239773] Chr7:98985840..99171421 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q21.2-22.1(chr7:92445452-99686985)x1 copy number loss Split hand-foot malformation 1 [RCV000656540] Chr7:92445452..99686985 [GRCh37]
Chr7:7q21.2-22.1		 pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q22.1(chr7:98847725-102472176)x1 copy number loss not provided [RCV000682904] Chr7:98847725..102472176 [GRCh37]
Chr7:7q22.1		 pathogenic
NC_000007.13:g.(20954043_21001537)_(114528369_114556605)inv inversion Childhood apraxia of speech [RCV000234948] Chr7:21001537..114528369 [GRCh37]
Chr7:7p15.3-q31.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q22.1(chr7:98758955-99368262)x1 copy number loss not provided [RCV000848016] Chr7:98758955..99368262 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q21.12-22.1(chr7:87477185-100333327) copy number gain Isolated Pierre-Robin syndrome [RCV001352649] Chr7:87477185..100333327 [GRCh37]
Chr7:7q21.12-22.1		 pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q22.1(chr7:98755291-99886571)x3 copy number gain not provided [RCV001836489] Chr7:98755291..99886571 [GRCh37]
Chr7:7q22.1		 uncertain significance
NC_000007.13:g.(?_98983338)_(100860555_?)del deletion not provided [RCV001877526] Chr7:98983338..100860555 [GRCh37]
Chr7:7q22.1		 pathogenic|uncertain significance
NC_000007.13:g.(?_97816327)_(99382096_?)dup duplication not provided [RCV001916368] Chr7:97816327..99382096 [GRCh37]
Chr7:7q21.3-22.1		 uncertain significance
NC_000007.13:g.(?_98507659)_(100860555_?)dup duplication not provided [RCV003113282] Chr7:98507659..100860555 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
GRCh38/hg38 7q22.1(chr7:98454022-100723798)x1 copy number loss Multiple congenital anomalies/dysmorphic syndrome [RCV003327701] Chr7:98454022..100723798 [GRCh38]
Chr7:7q22.1		 pathogenic
NM_004889.5(ATP5MF):c.155A>G (p.Tyr52Cys) single nucleotide variant Inborn genetic diseases [RCV003348133] Chr7:99459248 [GRCh38]
Chr7:99056871 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1(chr7:99057038-99165274)x1 copy number loss not provided [RCV003482970] Chr7:99057038..99165274 [GRCh37]
Chr7:7q22.1		 uncertain significance
GRCh37/hg19 7q22.1(chr7:98396469-102108193)x1 copy number loss not specified [RCV003986701] Chr7:98396469..102108193 [GRCh37]
Chr7:7q22.1		 likely pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2687
Count of miRNA genes:802
Interacting mature miRNAs:943
Transcripts:ENST00000292475, ENST00000359832, ENST00000394186, ENST00000414062, ENST00000449683, ENST00000466753, ENST00000481899, ENST00000485011, ENST00000488775, ENST00000491560, ENST00000523680, ENST00000524321, ENST00000544611
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:4584994  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37799,056,778 - 99,056,860UniSTSGRCh37
GRCh376109,228,849 - 109,228,931UniSTSGRCh37
Build 366109,335,542 - 109,335,624RGDNCBI36
Celera6109,974,755 - 109,974,837RGD
Celera793,790,979 - 93,791,061UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map6q21UniSTS
HuRef793,693,447 - 93,693,529UniSTS
HuRef6106,795,443 - 106,795,525UniSTS
CRA_TCAGchr7v2798,416,550 - 98,416,632UniSTS
WI-18640  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37799,055,819 - 99,055,968UniSTSGRCh37
GRCh376109,228,681 - 109,228,830UniSTSGRCh37
Build 366109,335,374 - 109,335,523RGDNCBI36
Celera793,790,020 - 93,790,169RGD
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map6q21UniSTS
HuRef793,692,488 - 93,692,637UniSTS
CRA_TCAGchr7v2798,415,591 - 98,415,740UniSTS
GeneMap99-GB4 RH Map7509.4UniSTS
Whitehead-RH Map7476.7UniSTS
RH91344  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7q22.1UniSTS
GeneMap99-GB4 RH Map1236.27UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 7
Medium 2439 2955 1725 623 1931 464 4357 2181 3731 419 1453 1613 175 1 1204 2788 6 2
Low 36 1 1 20 1 16 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001003714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001039178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC073063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF047436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF088918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY046911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE139254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU587946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB110074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB155273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD173604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD176299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN274665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR456891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR542155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS072281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA064847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB114195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EL952520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000292475   ⟹   ENSP00000292475
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,195 - 99,466,167 (-)Ensembl
RefSeq Acc Id: ENST00000359832   ⟹   ENSP00000352890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,195 - 99,466,164 (-)Ensembl
RefSeq Acc Id: ENST00000394186   ⟹   ENSP00000377740
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,309 - 99,466,161 (-)Ensembl
RefSeq Acc Id: ENST00000414062   ⟹   ENSP00000412149
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,448,956 - 99,466,165 (-)Ensembl
RefSeq Acc Id: ENST00000449683   ⟹   ENSP00000407540
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,190 - 99,466,167 (-)Ensembl
RefSeq Acc Id: ENST00000466753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,448,475 - 99,466,165 (-)Ensembl
RefSeq Acc Id: ENST00000481899
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,940 - 99,460,499 (-)Ensembl
RefSeq Acc Id: ENST00000485011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,459,655 - 99,466,186 (-)Ensembl
RefSeq Acc Id: ENST00000488775   ⟹   ENSP00000418197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,197 - 99,466,167 (-)Ensembl
RefSeq Acc Id: ENST00000491560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,458,195 - 99,460,465 (-)Ensembl
RefSeq Acc Id: ENST00000523680   ⟹   ENSP00000430398
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,459,237 - 99,466,167 (-)Ensembl
RefSeq Acc Id: ENST00000524321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl799,459,664 - 99,466,164 (-)Ensembl
RefSeq Acc Id: NM_001003713   ⟹   NP_001003713
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38799,458,195 - 99,466,167 (-)NCBI
GRCh37799,055,784 - 99,063,824 (-)ENTREZGENE
Build 36798,893,720 - 98,901,744 (-)NCBI Archive
Celera793,789,985 - 93,798,009 (-)RGD
HuRef793,692,453 - 93,700,497 (-)ENTREZGENE
CHM1_1798,985,884 - 98,993,924 (-)NCBI
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBI
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001003714   ⟹   NP_001003714
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38799,458,195 - 99,466,167 (-)NCBI
GRCh37799,055,784 - 99,063,824 (-)ENTREZGENE
Build 36798,893,720 - 98,901,744 (-)NCBI Archive
Celera793,789,985 - 93,798,009 (-)RGD
HuRef793,692,453 - 93,700,497 (-)ENTREZGENE
CHM1_1798,985,884 - 98,993,924 (-)NCBI
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBI
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001039178   ⟹   NP_001034267
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38799,458,195 - 99,466,167 (-)NCBI
GRCh37799,055,784 - 99,063,824 (-)ENTREZGENE
Build 36798,893,720 - 98,901,744 (-)NCBI Archive
Celera793,789,985 - 93,798,009 (-)RGD
HuRef793,692,453 - 93,700,497 (-)ENTREZGENE
CHM1_1798,985,884 - 98,993,924 (-)NCBI
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBI
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_004889   ⟹   NP_004880
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38799,458,195 - 99,466,167 (-)NCBI
GRCh37799,055,784 - 99,063,824 (-)ENTREZGENE
Build 36798,893,720 - 98,901,744 (-)NCBI Archive
Celera793,789,985 - 93,798,009 (-)RGD
HuRef793,692,453 - 93,700,497 (-)ENTREZGENE
CHM1_1798,985,884 - 98,993,924 (-)NCBI
T2T-CHM13v2.07100,697,101 - 100,705,074 (-)NCBI
CRA_TCAGchr7v2798,415,556 - 98,423,596 (-)ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_004880   ⟸   NM_004889
- Peptide Label: isoform 2a
- UniProtKB: Q96L83 (UniProtKB/Swiss-Prot),   Q6IBB3 (UniProtKB/Swiss-Prot),   O76079 (UniProtKB/Swiss-Prot),   F8W7V3 (UniProtKB/Swiss-Prot),   C9J8H9 (UniProtKB/Swiss-Prot),   Q9BTI8 (UniProtKB/Swiss-Prot),   P56134 (UniProtKB/Swiss-Prot),   Q53FE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001003713   ⟸   NM_001003713
- Peptide Label: isoform 2b
- UniProtKB: Q53FE1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001003714   ⟸   NM_001003714
- Peptide Label: isoform 2c
- UniProtKB: P56134 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001034267   ⟸   NM_001039178
- Peptide Label: isoform 2d
- UniProtKB: P56134 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000352890   ⟸   ENST00000359832
RefSeq Acc Id: ENSP00000292475   ⟸   ENST00000292475
RefSeq Acc Id: ENSP00000412149   ⟸   ENST00000414062
RefSeq Acc Id: ENSP00000430398   ⟸   ENST00000523680
RefSeq Acc Id: ENSP00000377740   ⟸   ENST00000394186
RefSeq Acc Id: ENSP00000418197   ⟸   ENST00000488775
RefSeq Acc Id: ENSP00000407540   ⟸   ENST00000449683

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P56134-F1-model_v2 AlphaFold P56134 1-94 view protein structure

Promoters
RGD ID:6805566
Promoter ID:HG_KWN:58811
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid
Transcripts:ENST00000394186,   OTTHUMT00000336307,   OTTHUMT00000336308
Position:
Human AssemblyChrPosition (strand)Source
Build 36798,896,024 - 98,896,524 (-)MPROMDB
RGD ID:6806112
Promoter ID:HG_KWN:58812
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001003713,   NM_001003714,   NM_001039178,   OTTHUMT00000336263,   OTTHUMT00000336264,   OTTHUMT00000336305,   OTTHUMT00000336306,   OTTHUMT00000336309,   OTTHUMT00000336390,   OTTHUMT00000336395,   OTTHUMT00000336396,   OTTHUMT00000336398
Position:
Human AssemblyChrPosition (strand)Source
Build 36798,901,499 - 98,901,999 (-)MPROMDB
RGD ID:7211217
Promoter ID:EPDNEW_H11354
Type:initiation region
Name:ATP5J2_2
Description:ATP synthase, H+ transporting, mitochondrial Fo complex subunitF2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11355  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38799,459,207 - 99,459,267EPDNEW
RGD ID:7211219
Promoter ID:EPDNEW_H11355
Type:initiation region
Name:ATP5J2_1
Description:ATP synthase, H+ transporting, mitochondrial Fo complex subunitF2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11354  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38799,460,152 - 99,460,212EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:848 AgrOrtholog
COSMIC ATP5MF COSMIC
Ensembl Genes ENSG00000241468 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000292475 ENTREZGENE
  ENST00000292475.8 UniProtKB/Swiss-Prot
  ENST00000359832 ENTREZGENE
  ENST00000359832.8 UniProtKB/Swiss-Prot
  ENST00000394186 ENTREZGENE
  ENST00000394186.3 UniProtKB/Swiss-Prot
  ENST00000414062.5 UniProtKB/Swiss-Prot
  ENST00000449683.5 UniProtKB/TrEMBL
  ENST00000488775 ENTREZGENE
  ENST00000488775.5 UniProtKB/Swiss-Prot
  ENST00000523680.1 UniProtKB/TrEMBL
GTEx ENSG00000241468 GTEx
HGNC ID HGNC:848 ENTREZGENE
Human Proteome Map ATP5MF Human Proteome Map
InterPro F1F0-ATPsyn_F_prd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:9551 UniProtKB/Swiss-Prot
NCBI Gene 9551 ENTREZGENE
OMIM 619792 OMIM
PANTHER ATP SYNTHASE SUBUNIT F, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13080 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WRW UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25138 PharmGKB
UniProt ATPK_HUMAN UniProtKB/Swiss-Prot
  C9J8H9 ENTREZGENE
  C9JU26_HUMAN UniProtKB/TrEMBL
  E5RKA0_HUMAN UniProtKB/TrEMBL
  F8W7V3 ENTREZGENE
  O76079 ENTREZGENE
  P56134 ENTREZGENE
  Q53FE1 ENTREZGENE, UniProtKB/TrEMBL
  Q6IBB3 ENTREZGENE
  Q96L83 ENTREZGENE
  Q9BTI8 ENTREZGENE
UniProt Secondary C9J8H9 UniProtKB/Swiss-Prot
  F8W7V3 UniProtKB/Swiss-Prot
  O76079 UniProtKB/Swiss-Prot
  Q6IBB3 UniProtKB/Swiss-Prot
  Q96L83 UniProtKB/Swiss-Prot
  Q9BTI8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-11-28 ATP5MF  ATP synthase membrane subunit f  ATP5J2  ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2  Symbol and/or name change 5135510 APPROVED
2015-12-08 ATP5J2  ATP synthase, H+ transporting, mitochondrial Fo complex subunit F2  ATP5J2  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2  Symbol and/or name change 5135510 APPROVED
2011-07-27 ATP5J2  ATP synthase, H+ transporting, mitochondrial Fo complex, subunit F2  ATP5J2  ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2  Symbol and/or name change 5135510 APPROVED