FAM3C (FAM3 metabolism regulating signaling molecule C) - Rat Genome Database

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Gene: FAM3C (FAM3 metabolism regulating signaling molecule C) Homo sapiens
Analyze
Symbol: FAM3C
Name: FAM3 metabolism regulating signaling molecule C
RGD ID: 1345832
HGNC Page HGNC:18664
Description: Predicted to enable carbohydrate binding activity. Predicted to be involved in signal transduction. Located in Golgi apparatus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: family with sequence similarity 3 member C; family with sequence similarity 3, member C; GS3786; ILEI; interleukin-like EMT inducer; interleukin-like epithelial-mesenchymal transition inducer; predicted osteoblast protein
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: FAM3C2P  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387121,348,878 - 121,396,396 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7121,348,878 - 121,396,364 (-)EnsemblGRCh38hg38GRCh38
GRCh377120,988,932 - 121,036,362 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367120,776,141 - 120,823,658 (-)NCBINCBI36Build 36hg18NCBI36
Build 347120,582,857 - 120,630,292NCBI
Celera7115,798,102 - 115,845,614 (-)NCBICelera
Cytogenetic Map7q31.31NCBI
HuRef7115,352,144 - 115,399,666 (-)NCBIHuRef
CHM1_17120,922,224 - 120,969,734 (-)NCBICHM1_1
T2T-CHM13v2.07122,664,194 - 122,711,727 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27120,383,656 - 120,431,153 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9847074   PMID:12160727   PMID:12477932   PMID:12853948   PMID:15252450   PMID:15489334   PMID:15985535   PMID:16215274   PMID:16344560   PMID:16406369   PMID:16959614   PMID:17255364  
PMID:18029348   PMID:19109932   PMID:19396169   PMID:20379614   PMID:21516116   PMID:21873635   PMID:22159821   PMID:22792070   PMID:22939629   PMID:23376485   PMID:23533145   PMID:24072492  
PMID:24623722   PMID:24738665   PMID:24945404   PMID:25212966   PMID:25416956   PMID:26186194   PMID:26498278   PMID:27256505   PMID:27862841   PMID:28514442   PMID:28545079   PMID:28751379  
PMID:28837266   PMID:29180619   PMID:29336056   PMID:29507755   PMID:29871931   PMID:30683473   PMID:30692635   PMID:30887707   PMID:31515488   PMID:31880039   PMID:31980649   PMID:32296183  
PMID:32316026   PMID:32344865   PMID:32393512   PMID:33492290   PMID:33545068   PMID:33596971   PMID:33729094   PMID:33961781   PMID:34378027   PMID:34473204   PMID:34672954   PMID:35271311  
PMID:35338135   PMID:35696571   PMID:35944360   PMID:36168628   PMID:36180527   PMID:36215168   PMID:36632230   PMID:37827155   PMID:38117489  


Genomics

Comparative Map Data
FAM3C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387121,348,878 - 121,396,396 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7121,348,878 - 121,396,364 (-)EnsemblGRCh38hg38GRCh38
GRCh377120,988,932 - 121,036,362 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367120,776,141 - 120,823,658 (-)NCBINCBI36Build 36hg18NCBI36
Build 347120,582,857 - 120,630,292NCBI
Celera7115,798,102 - 115,845,614 (-)NCBICelera
Cytogenetic Map7q31.31NCBI
HuRef7115,352,144 - 115,399,666 (-)NCBIHuRef
CHM1_17120,922,224 - 120,969,734 (-)NCBICHM1_1
T2T-CHM13v2.07122,664,194 - 122,711,727 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27120,383,656 - 120,431,153 (-)NCBI
Fam3c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39622,306,519 - 22,356,080 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl622,306,519 - 22,356,242 (-)EnsemblGRCm39 Ensembl
GRCm38622,306,520 - 22,356,081 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl622,306,520 - 22,356,243 (-)EnsemblGRCm38mm10GRCm38
MGSCv37622,256,522 - 22,306,081 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36622,256,523 - 22,306,082 (-)NCBIMGSCv36mm8
Celera622,360,644 - 22,410,200 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map69.24NCBI
Fam3c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8451,805,686 - 51,853,030 (-)NCBIGRCr8
mRatBN7.2450,839,929 - 50,887,276 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl450,838,818 - 50,888,078 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx455,825,466 - 55,872,830 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0451,746,545 - 51,793,901 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0450,172,124 - 50,219,707 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0449,388,962 - 49,439,892 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl449,387,989 - 49,439,867 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0449,179,381 - 49,231,971 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4448,628,905 - 48,676,252 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1448,859,478 - 48,906,826 (-)NCBI
Celera446,046,371 - 46,093,722 (-)NCBICelera
Cytogenetic Map4q22NCBI
Fam3c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554793,083,719 - 3,128,610 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554793,086,380 - 3,128,612 (-)NCBIChiLan1.0ChiLan1.0
FAM3C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26158,222,632 - 158,270,292 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1710,234,045 - 10,280,463 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07113,361,718 - 113,409,292 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17126,048,752 - 126,096,440 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7126,048,752 - 126,096,440 (-)Ensemblpanpan1.1panPan2
FAM3C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11459,407,920 - 59,447,257 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1459,410,012 - 59,447,258 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1458,822,333 - 58,874,998 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01459,441,840 - 59,494,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1459,441,846 - 59,494,523 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11459,535,226 - 59,587,846 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01459,160,036 - 59,212,872 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01459,538,294 - 59,591,126 (-)NCBIUU_Cfam_GSD_1.0
Fam3c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511848,355,297 - 48,396,837 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366053,807,032 - 3,848,634 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366053,807,089 - 3,848,633 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM3C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1825,569,536 - 25,612,458 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11825,569,356 - 25,612,072 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21827,174,036 - 27,216,644 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM3C
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12190,166,576 - 90,214,387 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2190,166,520 - 90,214,384 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604213,347,749 - 13,395,379 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam3c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478314,690,948 - 14,739,458 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478314,690,954 - 14,741,027 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM3C
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q31.1-31.33(chr7:113799835-124899218)x1 copy number loss See cases [RCV000054160] Chr7:113799835..124899218 [GRCh38]
Chr7:113439890..124539272 [GRCh37]
Chr7:113227126..124326508 [NCBI36]
Chr7:7q31.1-31.33		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7q31.1-31.33(chr7:114142477-125840381)x1 copy number loss See cases [RCV000135311] Chr7:114142477..125840381 [GRCh38]
Chr7:113782532..125480435 [GRCh37]
Chr7:113569768..125267671 [NCBI36]
Chr7:7q31.1-31.33		 pathogenic
GRCh38/hg38 7q21.3-36.3(chr7:97419852-158923762)x3 copy number gain See cases [RCV000136717] Chr7:97419852..158923762 [GRCh38]
Chr7:97049164..158716453 [GRCh37]
Chr7:96887100..158409214 [NCBI36]
Chr7:7q21.3-36.3		 pathogenic
GRCh38/hg38 7q31.2-33(chr7:117326805-134790689)x1 copy number loss See cases [RCV000138226] Chr7:117326805..134790689 [GRCh38]
Chr7:116966859..134475440 [GRCh37]
Chr7:116754095..134125980 [NCBI36]
Chr7:7q31.2-33		 pathogenic
GRCh38/hg38 7q31.2-36.3(chr7:115459015-159325817)x3 copy number gain See cases [RCV000141413] Chr7:115459015..159325817 [GRCh38]
Chr7:115099069..159118507 [GRCh37]
Chr7:114886305..158811268 [NCBI36]
Chr7:7q31.2-36.3		 pathogenic
GRCh37/hg19 7q31.1-32.1(chr7:111613396-127897316)x1 copy number loss See cases [RCV000240177] Chr7:111613396..127897316 [GRCh37]
Chr7:7q31.1-32.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
TMEM106B-BRAF fusion deletion Pleomorphic xanthoastrocytoma [RCV000454357] Chr7:12258147..140494267 [GRCh37]
Chr7:7p21.3-q34		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98969247-159119707)x3 copy number gain See cases [RCV000447709] Chr7:98969247..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q31.31(chr7:120864414-121086762)x1 copy number loss See cases [RCV000511484] Chr7:120864414..121086762 [GRCh37]
Chr7:7q31.31		 likely benign
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q22.1-36.3(chr7:98693388-159119707)x3 copy number gain not provided [RCV000682911] Chr7:98693388..159119707 [GRCh37]
Chr7:7q22.1-36.3		 pathogenic
GRCh37/hg19 7q31.31(chr7:120818380-121033193)x1 copy number loss not provided [RCV000849833] Chr7:120818380..121033193 [GRCh37]
Chr7:7q31.31		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7q31.1-36.3(chr7:109251060-159119707)x3 copy number gain not provided [RCV001005994] Chr7:109251060..159119707 [GRCh37]
Chr7:7q31.1-36.3		 pathogenic
GRCh37/hg19 7q22.3-31.32(chr7:106617406-123217914)x1 copy number loss not provided [RCV001005991] Chr7:106617406..123217914 [GRCh37]
Chr7:7q22.3-31.32		 pathogenic
GRCh37/hg19 7q31.2-31.33(chr7:116297277-126370694) copy number loss Global developmental delay [RCV001352642] Chr7:116297277..126370694 [GRCh37]
Chr7:7q31.2-31.33		 pathogenic
GRCh37/hg19 7q31.31(chr7:120813156-121033289)x1 copy number loss not provided [RCV001832940] Chr7:120813156..121033289 [GRCh37]
Chr7:7q31.31		 uncertain significance
GRCh37/hg19 7q22.3-32.1(chr7:106984287-128949489) copy number gain not specified [RCV002053715] Chr7:106984287..128949489 [GRCh37]
Chr7:7q22.3-32.1		 pathogenic
Single allele deletion Delayed speech and language development [RCV002251690] Chr7:114888786..124720929 [GRCh37]
Chr7:7q31.2-31.33		 likely pathogenic
Single allele complex Ring chromosome 7 [RCV002280646] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:56604613-96692931)x1 copy number loss See cases [RCV002287832] Chr7:56604613..96692931 [GRCh37]
Chr7:7p22.3-q36.3		 uncertain significance
NM_014888.3(FAM3C):c.276A>C (p.Leu92Phe) single nucleotide variant Inborn genetic diseases [RCV002763389] Chr7:121364185 [GRCh38]
Chr7:121004239 [GRCh37]
Chr7:7q31.31		 uncertain significance
NM_014888.3(FAM3C):c.607A>G (p.Asn203Asp) single nucleotide variant Inborn genetic diseases [RCV002931366] Chr7:121350538 [GRCh38]
Chr7:120990592 [GRCh37]
Chr7:7q31.31		 uncertain significance
NM_014888.3(FAM3C):c.572A>G (p.Lys191Arg) single nucleotide variant Inborn genetic diseases [RCV002792767] Chr7:121351165 [GRCh38]
Chr7:120991219 [GRCh37]
Chr7:7q31.31		 uncertain significance
NM_014888.3(FAM3C):c.391C>G (p.Pro131Ala) single nucleotide variant Inborn genetic diseases [RCV002813895] Chr7:121360119 [GRCh38]
Chr7:121000173 [GRCh37]
Chr7:7q31.31		 uncertain significance
NM_014888.3(FAM3C):c.112C>G (p.Leu38Val) single nucleotide variant Inborn genetic diseases [RCV003385435] Chr7:121378916 [GRCh38]
Chr7:121018970 [GRCh37]
Chr7:7q31.31		 uncertain significance
GRCh37/hg19 7q31.31-33(chr7:120582003-137699953)x1 copy number loss not specified [RCV003986721] Chr7:120582003..137699953 [GRCh37]
Chr7:7q31.31-33		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:749
Count of miRNA genes:504
Interacting mature miRNAs:565
Transcripts:ENST00000359943, ENST00000412653, ENST00000426156, ENST00000474082, ENST00000497622
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
STS-H88599  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,990,086 - 120,990,314UniSTSGRCh37
GRCh37X23,095,088 - 23,095,316UniSTSGRCh37
Build 36X23,005,009 - 23,005,237RGDNCBI36
Celera7115,799,283 - 115,799,511UniSTS
CeleraX27,216,770 - 27,216,998RGD
Cytogenetic Map7q31UniSTS
Cytogenetic MapXp22.11UniSTS
HuRef7115,353,325 - 115,353,553UniSTS
CRA_TCAGchr7v27120,384,837 - 120,385,065UniSTS
GeneMap99-GB4 RH Map7568.44UniSTS
WI-16398  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,990,086 - 120,990,226UniSTSGRCh37
GRCh37X23,095,176 - 23,095,316UniSTSGRCh37
Build 36X23,005,097 - 23,005,237RGDNCBI36
Celera7115,799,283 - 115,799,423UniSTS
CeleraX27,216,858 - 27,216,998RGD
Cytogenetic Map7q31UniSTS
Cytogenetic MapXp22.11UniSTS
HuRef7115,353,325 - 115,353,465UniSTS
CRA_TCAGchr7v27120,384,837 - 120,384,977UniSTS
GeneMap99-GB4 RH Map7568.33UniSTS
Whitehead-RH Map7504.6UniSTS
WI-14616  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,022,632 - 121,022,781UniSTSGRCh37
Build 367120,809,868 - 120,810,017RGDNCBI36
Celera7115,831,834 - 115,831,983RGD
Cytogenetic Map7q31UniSTS
HuRef7115,385,888 - 115,386,037UniSTS
CRA_TCAGchr7v27120,417,373 - 120,417,522UniSTS
GeneMap99-GB4 RH Map7560.54UniSTS
Whitehead-RH Map7506.3UniSTS
NCBI RH Map71123.3UniSTS
RH64602  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37X23,094,896 - 23,095,005UniSTSGRCh37
GRCh377120,990,397 - 120,990,506UniSTSGRCh37
Build 36X23,004,817 - 23,004,926RGDNCBI36
CeleraX27,216,578 - 27,216,687RGD
Celera7115,799,594 - 115,799,703UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map7q31UniSTS
HuRef7115,353,636 - 115,353,745UniSTS
CRA_TCAGchr7v27120,385,148 - 120,385,257UniSTS
SHGC-68665  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,037,317 - 121,037,645UniSTSGRCh37
Build 367120,824,553 - 120,824,881RGDNCBI36
Celera7115,846,509 - 115,846,837RGD
Cytogenetic Map7q31.32UniSTS
Cytogenetic Map7q31UniSTS
HuRef7115,400,561 - 115,400,889UniSTS
CRA_TCAGchr7v27120,432,048 - 120,432,376UniSTS
TNG Radiation Hybrid Map754306.0UniSTS
RH122000  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,024,994 - 121,025,283UniSTSGRCh37
Build 367120,812,230 - 120,812,519RGDNCBI36
Celera7115,834,196 - 115,834,485RGD
Cytogenetic Map7q31UniSTS
HuRef7115,388,249 - 115,388,538UniSTS
CRA_TCAGchr7v27120,419,735 - 120,420,024UniSTS
TNG Radiation Hybrid Map754297.0UniSTS
SHGC-105051  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,995,490 - 120,995,837UniSTSGRCh37
Build 367120,782,726 - 120,783,073RGDNCBI36
Celera7115,804,689 - 115,805,036RGD
Cytogenetic Map7q31UniSTS
HuRef7115,358,731 - 115,359,078UniSTS
CRA_TCAGchr7v27120,390,243 - 120,390,590UniSTS
TNG Radiation Hybrid Map754283.0UniSTS
D7S2821  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,988,950 - 120,989,131UniSTSGRCh37
GRCh37X23,096,271 - 23,096,452UniSTSGRCh37
Build 36X23,006,192 - 23,006,373RGDNCBI36
CeleraX27,217,945 - 27,218,126RGD
Celera7115,798,147 - 115,798,328UniSTS
Cytogenetic Map7q31UniSTS
HuRefX20,838,678 - 20,838,859UniSTS
HuRef7115,352,189 - 115,352,370UniSTS
CRA_TCAGchr7v27120,383,701 - 120,383,882UniSTS
GeneMap99-GB4 RH Map7560.92UniSTS
Whitehead-RH Map7504.7UniSTS
Whitehead-YAC Contig Map7 UniSTS
RH48532  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,988,614 - 120,988,735UniSTSGRCh37
Build 367120,775,850 - 120,775,971RGDNCBI36
Celera7115,797,812 - 115,797,933RGD
Cytogenetic Map7q31UniSTS
HuRef7115,351,854 - 115,351,975UniSTS
CRA_TCAGchr7v27120,383,366 - 120,383,487UniSTS
GeneMap99-GB4 RH Map7560.54UniSTS
NCBI RH Map71123.3UniSTS
GDB:6028505  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,003,120 - 121,003,389UniSTSGRCh37
Build 367120,790,356 - 120,790,625RGDNCBI36
Celera7115,812,328 - 115,812,597RGD
Cytogenetic Map7q31UniSTS
HuRef7115,366,370 - 115,366,639UniSTS
CRA_TCAGchr7v27120,397,882 - 120,398,151UniSTS
D7S1648  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,036,901 - 121,037,014UniSTSGRCh37
Build 367120,824,137 - 120,824,250RGDNCBI36
Celera7115,846,093 - 115,846,206RGD
Cytogenetic Map7q31UniSTS
Cytogenetic Map7q31.32UniSTS
HuRef7115,400,145 - 115,400,258UniSTS
CRA_TCAGchr7v27120,431,632 - 120,431,745UniSTS
A007A03  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,024,083 - 121,024,255UniSTSGRCh37
Build 367120,811,319 - 120,811,491RGDNCBI36
Celera7115,833,285 - 115,833,457RGD
Cytogenetic Map7q31UniSTS
HuRef7115,387,338 - 115,387,510UniSTS
CRA_TCAGchr7v27120,418,824 - 120,418,996UniSTS
GeneMap99-GB4 RH Map7560.65UniSTS
NCBI RH Map71122.3UniSTS
A004T29  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,022,672 - 121,022,851UniSTSGRCh37
Build 367120,809,908 - 120,810,087RGDNCBI36
Celera7115,831,874 - 115,832,053RGD
Cytogenetic Map7q31UniSTS
HuRef7115,385,928 - 115,386,107UniSTS
CRA_TCAGchr7v27120,417,413 - 120,417,592UniSTS
GeneMap99-GB4 RH Map7560.54UniSTS
Whitehead-RH Map7506.3UniSTS
NCBI RH Map71122.8UniSTS
D7S2158E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,990,392 - 120,990,559UniSTSGRCh37
GRCh37X23,094,843 - 23,095,010UniSTSGRCh37
Build 36X23,004,764 - 23,004,931RGDNCBI36
Celera7115,799,589 - 115,799,756RGD
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map7q31UniSTS
HuRef7115,353,631 - 115,353,798UniSTS
CRA_TCAGchr7v27120,385,143 - 120,385,310UniSTS
TNG Radiation Hybrid Map754036.0UniSTS
Stanford-G3 RH Map75873.0UniSTS
NCBI RH Map71114.5UniSTS
GeneMap99-G3 RH Map75873.0UniSTS
A002V29  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377120,990,342 - 120,990,453UniSTSGRCh37
GRCh37X23,094,949 - 23,095,060UniSTSGRCh37
Build 36X23,004,870 - 23,004,981RGDNCBI36
Celera7115,799,539 - 115,799,650UniSTS
CeleraX27,216,631 - 27,216,742RGD
Cytogenetic Map7q31UniSTS
Cytogenetic MapXp22.11UniSTS
HuRef7115,353,581 - 115,353,692UniSTS
CRA_TCAGchr7v27120,385,093 - 120,385,204UniSTS
GeneMap99-GB4 RH Map7568.44UniSTS
D7S705  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh377121,017,743 - 121,017,828UniSTSGRCh37
Build 367120,804,979 - 120,805,064RGDNCBI36
Celera7115,826,927 - 115,827,012RGD
Cytogenetic Map7q31UniSTS
HuRef7115,380,968 - 115,381,053UniSTS
CRA_TCAGchr7v27120,412,481 - 120,412,566UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1 2
Medium 2422 2071 1617 525 1178 369 3702 1390 3297 392 1424 1609 172 1 1199 2138 6 2
Low 17 856 109 99 709 96 655 807 437 27 35 1 3 5 650
Below cutoff 64 64

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001040020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_014888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011515737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054357087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC079401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK290682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX676230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024200 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA446040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS079683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CS359956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D87120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA144459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA489351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA501135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DQ786255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000359943   ⟹   ENSP00000353025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7121,348,878 - 121,396,308 (-)Ensembl
RefSeq Acc Id: ENST00000412653   ⟹   ENSP00000408636
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7121,360,056 - 121,396,364 (-)Ensembl
RefSeq Acc Id: ENST00000426156   ⟹   ENSP00000414940
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7121,360,092 - 121,396,308 (-)Ensembl
RefSeq Acc Id: ENST00000474082
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7121,350,383 - 121,351,541 (-)Ensembl
RefSeq Acc Id: ENST00000497622
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7121,362,705 - 121,364,552 (-)Ensembl
RefSeq Acc Id: NM_001040020   ⟹   NP_001035109
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,396,308 (-)NCBI
GRCh377120,988,905 - 121,036,422 (-)RGD
Build 367120,776,141 - 120,823,658 (-)NCBI Archive
Celera7115,798,102 - 115,845,614 (-)RGD
HuRef7115,352,144 - 115,399,666 (-)ENTREZGENE
CHM1_17120,922,224 - 120,969,734 (-)NCBI
T2T-CHM13v2.07122,664,194 - 122,711,633 (-)NCBI
CRA_TCAGchr7v27120,383,656 - 120,431,153 (-)RGD
Sequence:
RefSeq Acc Id: NM_014888   ⟹   NP_055703
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,396,308 (-)NCBI
GRCh377120,988,905 - 121,036,422 (-)RGD
Build 367120,776,141 - 120,823,658 (-)NCBI Archive
Celera7115,798,102 - 115,845,614 (-)RGD
HuRef7115,352,144 - 115,399,666 (-)ENTREZGENE
CHM1_17120,922,224 - 120,969,734 (-)NCBI
T2T-CHM13v2.07122,664,194 - 122,711,633 (-)NCBI
CRA_TCAGchr7v27120,383,656 - 120,431,153 (-)RGD
Sequence:
RefSeq Acc Id: XM_011515736   ⟹   XP_011514038
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,396,308 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011515737   ⟹   XP_011514039
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,395,928 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047419771   ⟹   XP_047275727
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,396,308 (-)NCBI
RefSeq Acc Id: XM_047419772   ⟹   XP_047275728
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,395,471 (-)NCBI
RefSeq Acc Id: XM_047419773   ⟹   XP_047275729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,396,021 (-)NCBI
RefSeq Acc Id: XM_047419774   ⟹   XP_047275730
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,391,361 (-)NCBI
RefSeq Acc Id: XM_047419775   ⟹   XP_047275731
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,348,878 - 121,396,396 (-)NCBI
RefSeq Acc Id: XM_054357081   ⟹   XP_054213056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,711,633 (-)NCBI
RefSeq Acc Id: XM_054357082   ⟹   XP_054213057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,710,796 (-)NCBI
RefSeq Acc Id: XM_054357083   ⟹   XP_054213058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,711,346 (-)NCBI
RefSeq Acc Id: XM_054357084   ⟹   XP_054213059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,706,686 (-)NCBI
RefSeq Acc Id: XM_054357085   ⟹   XP_054213060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,711,721 (-)NCBI
RefSeq Acc Id: XM_054357086   ⟹   XP_054213061
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,711,727 (-)NCBI
RefSeq Acc Id: XM_054357087   ⟹   XP_054213062
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.07122,664,194 - 122,711,253 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001035109 (Get FASTA)   NCBI Sequence Viewer  
  NP_055703 (Get FASTA)   NCBI Sequence Viewer  
  XP_011514038 (Get FASTA)   NCBI Sequence Viewer  
  XP_011514039 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275727 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275728 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275729 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275730 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275731 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213056 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213057 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213058 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213059 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213060 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213061 (Get FASTA)   NCBI Sequence Viewer  
  XP_054213062 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH24200 (Get FASTA)   NCBI Sequence Viewer  
  AAH46932 (Get FASTA)   NCBI Sequence Viewer  
  AAH68526 (Get FASTA)   NCBI Sequence Viewer  
  BAA13251 (Get FASTA)   NCBI Sequence Viewer  
  BAF83371 (Get FASTA)   NCBI Sequence Viewer  
  BAF85420 (Get FASTA)   NCBI Sequence Viewer  
  CAD83811 (Get FASTA)   NCBI Sequence Viewer  
  CAI94481 (Get FASTA)   NCBI Sequence Viewer  
  CAL31920 (Get FASTA)   NCBI Sequence Viewer  
  EAW83558 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000353025
  ENSP00000353025.3
  ENSP00000408636.1
  ENSP00000414940.1
GenBank Protein Q92520 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_055703   ⟸   NM_014888
- Peptide Label: precursor
- UniProtKB: A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot),   Q92520 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001035109   ⟸   NM_001040020
- Peptide Label: precursor
- UniProtKB: A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot),   Q92520 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011514038   ⟸   XM_011515736
- Peptide Label: isoform X1
- UniProtKB: A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot),   Q92520 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011514039   ⟸   XM_011515737
- Peptide Label: isoform X1
- UniProtKB: A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot),   Q92520 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000353025   ⟸   ENST00000359943
RefSeq Acc Id: ENSP00000414940   ⟸   ENST00000426156
RefSeq Acc Id: ENSP00000408636   ⟸   ENST00000412653
RefSeq Acc Id: XP_047275731   ⟸   XM_047419775
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275727   ⟸   XM_047419771
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275729   ⟸   XM_047419773
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275728   ⟸   XM_047419772
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047275730   ⟸   XM_047419774
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213061   ⟸   XM_054357086
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213060   ⟸   XM_054357085
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213056   ⟸   XM_054357081
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213058   ⟸   XM_054357083
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213062   ⟸   XM_054357087
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213057   ⟸   XM_054357082
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054213059   ⟸   XM_054357084
- Peptide Label: isoform X1
- UniProtKB: Q92520 (UniProtKB/Swiss-Prot),   A6NDN2 (UniProtKB/Swiss-Prot),   A8K3R7 (UniProtKB/Swiss-Prot)
Protein Domains
GG-type lectin   ILEI/PANDER

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q92520-F1-model_v2 AlphaFold Q92520 1-227 view protein structure

Promoters
RGD ID:6805656
Promoter ID:HG_KWN:59482
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001040020,   NM_014888,   OTTHUMT00000346946,   OTTHUMT00000346947,   OTTHUMT00000346948
Position:
Human AssemblyChrPosition (strand)Source
Build 367120,823,461 - 120,823,961 (-)MPROMDB
RGD ID:7211799
Promoter ID:EPDNEW_H11645
Type:initiation region
Name:FAM3C_1
Description:family with sequence similarity 3 member C
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H11646  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh387121,396,308 - 121,396,368EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18664 AgrOrtholog
COSMIC FAM3C COSMIC
Ensembl Genes ENSG00000196937 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000359943 ENTREZGENE
  ENST00000359943.8 UniProtKB/Swiss-Prot
  ENST00000412653.5 UniProtKB/TrEMBL
  ENST00000426156.1 UniProtKB/TrEMBL
GTEx ENSG00000196937 GTEx
HGNC ID HGNC:18664 ENTREZGENE
Human Proteome Map FAM3C Human Proteome Map
InterPro FAM3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILEI/PANDER_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ILEI_FAM3C UniProtKB/Swiss-Prot
KEGG Report hsa:10447 UniProtKB/Swiss-Prot
NCBI Gene 10447 ENTREZGENE
OMIM 608618 OMIM
PANTHER PTHR14592 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14592:SF10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ILEI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA38627 PharmGKB
PROSITE GG_LECTIN UniProtKB/Swiss-Prot
UniProt A6NDN2 ENTREZGENE
  A8K3R7 ENTREZGENE
  C9JMN4_HUMAN UniProtKB/TrEMBL
  C9JP35_HUMAN UniProtKB/TrEMBL
  FAM3C_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6NDN2 UniProtKB/Swiss-Prot
  A8K3R7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-24 FAM3C  FAM3 metabolism regulating signaling molecule C  FAM3C  family with sequence similarity 3 member C  Symbol and/or name change 5135510 APPROVED
2015-11-24 FAM3C  family with sequence similarity 3 member C    family with sequence similarity 3, member C  Symbol and/or name change 5135510 APPROVED