ETF1P2 (eukaryotic translation termination factor 1 pseudogene 2) - Rat Genome Database

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Gene: ETF1P2 (eukaryotic translation termination factor 1 pseudogene 2) Homo sapiens
Analyze
Symbol: ETF1P2
Name: eukaryotic translation termination factor 1 pseudogene 2
RGD ID: 1345726
HGNC Page HGNC:3479
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: SUP45L3
Related Functional Gene: ETF1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387151,501,762 - 151,504,327 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7151,501,878 - 151,503,463 (+)EnsemblGRCh38hg38GRCh38
GRCh377151,198,848 - 151,201,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367150,829,702 - 150,832,435 (+)NCBINCBI36Build 36hg18NCBI36
Celera7145,756,393 - 145,758,873 (+)NCBICelera
Cytogenetic Map7q36.1NCBI
HuRef7145,010,488 - 145,012,968 (+)NCBIHuRef
CHM1_17151,207,312 - 151,209,791 (+)NCBICHM1_1
T2T-CHM13v2.07152,674,590 - 152,677,156 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27150,528,500 - 150,530,980 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1546371   PMID:10413110  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:158
Interacting mature miRNAs:158
Transcripts:ENST00000478788
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 229 177 146 26 217 12 1223 115 290 24 189 295 15 249 639 1
Below cutoff 2019 2268 1315 416 1176 274 2951 1818 2367 240 1143 1178 153 915 2008 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000478788
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7151,501,878 - 151,503,463 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ETF1P2 COSMIC
Ensembl Genes ENSG00000240132 Ensembl
GTEx ENSG00000240132 GTEx
HGNC ID HGNC:3479 ENTREZGENE
Human Proteome Map ETF1P2 Human Proteome Map
NCBI Gene 6825 ENTREZGENE
PharmGKB PA27895 PharmGKB