ZSCAN26 (zinc finger and SCAN domain containing 26) - Rat Genome Database

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Gene: ZSCAN26 (zinc finger and SCAN domain containing 26) Homo sapiens
Analyze
Symbol: ZSCAN26
Name: zinc finger and SCAN domain containing 26
RGD ID: 1345585
HGNC Page HGNC:12978
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC2815; SRE-ZBP; SREZBP; zinc finger and SCAN domain-containing protein 26; zinc finger protein 187; ZNF187
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,267,143 - 28,278,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,267,058 - 28,278,224 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,234,921 - 28,245,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,342,872 - 28,353,960 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,342,911 - 28,353,957NCBI
Celera629,841,233 - 29,852,427 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,042,442 - 28,053,636 (+)NCBIHuRef
CHM1_1628,237,154 - 28,248,348 (+)NCBICHM1_1
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
genetic disease  (IAGP)
megacolon  (IAGP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytosol  (IDA)
nucleoplasm  (IDA)
nucleus  (IEA,NAS)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1569959   PMID:12477932   PMID:14702039   PMID:16344560   PMID:19416867   PMID:21873635   PMID:21988832   PMID:25416956   PMID:26186194   PMID:26496610   PMID:28514442   PMID:29180619  
PMID:32296183   PMID:32814053   PMID:33961781   PMID:35563538   PMID:36089195   PMID:37689310  


Genomics

Comparative Map Data
ZSCAN26
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,267,143 - 28,278,204 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,267,058 - 28,278,224 (+)EnsemblGRCh38hg38GRCh38
GRCh37628,234,921 - 28,245,981 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,342,872 - 28,353,960 (+)NCBINCBI36Build 36hg18NCBI36
Build 34628,342,911 - 28,353,957NCBI
Celera629,841,233 - 29,852,427 (+)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,042,442 - 28,053,636 (+)NCBIHuRef
CHM1_1628,237,154 - 28,248,348 (+)NCBICHM1_1
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBIT2T-CHM13v2.0
Zscan26
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391321,626,344 - 21,637,901 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1321,626,350 - 21,637,900 (-)EnsemblGRCm39 Ensembl
GRCm381321,442,180 - 21,453,727 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1321,442,180 - 21,453,730 (-)EnsemblGRCm38mm10GRCm38
MGSCv371321,534,044 - 21,545,596 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361321,449,702 - 21,455,407 (-)NCBIMGSCv36mm8
Celera1321,708,080 - 21,719,630 (-)NCBICelera
Cytogenetic Map13A3.1NCBI
cM Map137.8NCBI
Zscan26
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81747,843,822 - 47,863,799 (+)NCBIGRCr8
mRatBN7.21743,148,063 - 43,168,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1743,148,079 - 43,168,070 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1745,205,514 - 45,225,474 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01749,964,628 - 49,984,588 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01744,455,001 - 44,474,976 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01745,188,221 - 45,207,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1745,188,248 - 45,207,065 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01758,261,028 - 58,283,803 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41750,790,889 - 50,811,601 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11750,811,382 - 50,811,474 (+)NCBI
Celera1753,299,163 - 53,320,052 (-)NCBICelera
Cytogenetic Map17p11NCBI
Zscan26
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546513,626,541 - 13,640,818 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546513,626,552 - 13,638,819 (+)NCBIChiLan1.0ChiLan1.0
ZSCAN26
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,882,293 - 42,894,125 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,883,155 - 38,894,987 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,069,220 - 28,080,625 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,741,890 - 28,752,403 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl628,741,984 - 28,752,403 (+)Ensemblpanpan1.1panPan2
ZSCAN26
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,406,872 - 25,415,377 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,398,717 - 25,415,382 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,264,958 - 25,274,121 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,704,876 - 25,714,039 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,697,177 - 25,713,632 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,369,512 - 25,380,949 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,422,733 - 25,431,898 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,892,180 - 26,901,539 (+)NCBIUU_Cfam_GSD_1.0
Zscan26
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494628,687,869 - 28,699,952 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493677286,251 - 90,873 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493677285,439 - 97,363 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZSCAN26
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,114,868 - 22,132,502 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,114,768 - 22,135,139 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN26
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11744,289,206 - 44,299,823 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604427,957,009 - 27,967,844 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zscan26
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475624,622,629 - 24,633,916 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475624,623,786 - 24,633,882 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZSCAN26
5 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6p22.3-21.33(chr6:18120520-30767516)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052180]|See cases [RCV000052180] Chr6:18120520..30767516 [GRCh38]
Chr6:18120751..30735293 [GRCh37]
Chr6:18228730..30843272 [NCBI36]
Chr6:6p22.3-21.33
pathogenic
GRCh38/hg38 6p22.2-22.1(chr6:26280579-28727313)x3 copy number gain See cases [RCV000133692] Chr6:26280579..28727313 [GRCh38]
Chr6:26280807..28695090 [GRCh37]
Chr6:26388786..28803069 [NCBI36]
Chr6:6p22.2-22.1
uncertain significance
GRCh38/hg38 6p25.2-21.33(chr6:3224310-30657190)x3 copy number gain See cases [RCV000138956] Chr6:3224310..30657190 [GRCh38]
Chr6:3224544..30624967 [GRCh37]
Chr6:3169543..30732946 [NCBI36]
Chr6:6p25.2-21.33
pathogenic
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32
uncertain significance
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33
likely pathogenic
NM_001023560.4(ZSCAN26):c.953A>T (p.Lys318Ile) single nucleotide variant Inborn genetic diseases [RCV002783600] Chr6:28276609 [GRCh38]
Chr6:28244386 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001023560.4(ZSCAN26):c.212G>A (p.Arg71Gln) single nucleotide variant Inborn genetic diseases [RCV002708219] Chr6:28272131 [GRCh38]
Chr6:28239909 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001023560.4(ZSCAN26):c.1393G>A (p.Gly465Ser) single nucleotide variant Inborn genetic diseases [RCV002980491] Chr6:28277049 [GRCh38]
Chr6:28244826 [GRCh37]
Chr6:6p22.1
uncertain significance
NM_001023560.4(ZSCAN26):c.1124C>A (p.Thr375Asn) single nucleotide variant Inborn genetic diseases [RCV003216233] Chr6:28276780 [GRCh38]
Chr6:28244557 [GRCh37]
Chr6:6p22.1
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:482
Count of miRNA genes:322
Interacting mature miRNAs:343
Transcripts:ENST00000316606, ENST00000421553, ENST00000423234
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D6S2118  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,245,618 - 28,245,752UniSTSGRCh37
Build 36628,353,597 - 28,353,731RGDNCBI36
Celera629,852,064 - 29,852,198RGD
Cytogenetic Map6p21.31UniSTS
HuRef628,053,273 - 28,053,407UniSTS
Stanford-G3 RH Map61379.0UniSTS
NCBI RH Map6406.6UniSTS
GeneMap99-G3 RH Map61511.0UniSTS
D6S1940  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,244,913 - 28,245,243UniSTSGRCh37
Build 36628,352,892 - 28,353,222RGDNCBI36
Celera629,851,359 - 29,851,689RGD
Cytogenetic Map6p21.31UniSTS
HuRef628,052,568 - 28,052,898UniSTS
TNG Radiation Hybrid Map615016.0UniSTS
GeneMap99-GB4 RH Map6119.27UniSTS
GeneMap99-GB4 RH Map6114.63UniSTS
Whitehead-RH Map6165.1UniSTS
NCBI RH Map6490.5UniSTS
GeneMap99-G3 RH Map61442.0UniSTS
SHGC-132144  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,245,578 - 28,245,768UniSTSGRCh37
Build 36628,353,557 - 28,353,747RGDNCBI36
Celera629,852,024 - 29,852,214RGD
Cytogenetic Map6p21.31UniSTS
HuRef628,053,233 - 28,053,423UniSTS
TNG Radiation Hybrid Map615025.0UniSTS
RH46597  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,245,647 - 28,245,804UniSTSGRCh37
Build 36628,353,626 - 28,353,783RGDNCBI36
Celera629,852,093 - 29,852,250RGD
Cytogenetic Map6p21.31UniSTS
HuRef628,053,302 - 28,053,459UniSTS
GeneMap99-GB4 RH Map6115.64UniSTS
NCBI RH Map6490.5UniSTS
D6S2280  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37628,238,575 - 28,238,693UniSTSGRCh37
Build 36628,346,554 - 28,346,672RGDNCBI36
Celera629,845,020 - 29,845,138RGD
Cytogenetic Map6p21.31UniSTS
HuRef628,046,229 - 28,046,347UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1790 1433 1237 180 1027 91 2248 975 2541 245 1304 1250 96 784 1397 1
Low 645 1525 489 443 893 374 2108 1220 1191 174 152 360 76 1 420 1391 3 1
Below cutoff 1 30 31 1 3 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001023560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001111039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_152736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011514869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017011265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024446539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047419314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054356349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ420533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL021997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL526328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013951 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA167287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA341149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA528922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA566660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA884554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB262147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC353668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GD143716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF459630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z11773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000316606   ⟹   ENSP00000484931
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,058 - 28,278,201 (+)Ensembl
RefSeq Acc Id: ENST00000421553   ⟹   ENSP00000481707
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,143 - 28,278,204 (+)Ensembl
RefSeq Acc Id: ENST00000611552   ⟹   ENSP00000478769
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,149 - 28,277,159 (+)Ensembl
RefSeq Acc Id: ENST00000614088   ⟹   ENSP00000479314
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,359 - 28,278,221 (+)Ensembl
RefSeq Acc Id: ENST00000617168   ⟹   ENSP00000481024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,143 - 28,272,703 (+)Ensembl
RefSeq Acc Id: ENST00000619937   ⟹   ENSP00000484018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,359 - 28,278,224 (+)Ensembl
RefSeq Acc Id: ENST00000623276   ⟹   ENSP00000485228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl628,267,153 - 28,277,530 (+)Ensembl
RefSeq Acc Id: NM_001023560   ⟹   NP_001018854
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
GRCh37628,234,788 - 28,246,001 (+)NCBI
Build 36628,342,872 - 28,353,960 (+)NCBI Archive
Celera629,841,233 - 29,852,427 (+)RGD
HuRef628,042,442 - 28,053,656 (+)NCBI
CHM1_1628,237,154 - 28,248,368 (+)NCBI
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001111039   ⟹   NP_001104509
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
GRCh37628,234,788 - 28,246,001 (+)NCBI
Celera629,841,233 - 29,852,427 (+)RGD
HuRef628,042,442 - 28,053,656 (+)NCBI
CHM1_1628,237,154 - 28,248,368 (+)NCBI
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287421   ⟹   NP_001274350
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
HuRef628,042,442 - 28,053,656 (+)NCBI
CHM1_1628,237,503 - 28,248,368 (+)NCBI
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287422   ⟹   NP_001274351
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
HuRef628,042,442 - 28,053,656 (+)NCBI
CHM1_1628,237,154 - 28,248,368 (+)NCBI
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
Sequence:
RefSeq Acc Id: NM_152736   ⟹   NP_689949
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
GRCh37628,234,788 - 28,246,001 (+)NCBI
Build 36628,342,872 - 28,353,960 (+)NCBI Archive
Celera629,841,233 - 29,852,427 (+)RGD
HuRef628,042,442 - 28,053,656 (+)NCBI
CHM1_1628,237,154 - 28,248,368 (+)NCBI
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011514862   ⟹   XP_011513164
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011514864   ⟹   XP_011513166
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017011264   ⟹   XP_016866753
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024446538   ⟹   XP_024302306
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047419311   ⟹   XP_047275267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
RefSeq Acc Id: XM_047419312   ⟹   XP_047275268
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
RefSeq Acc Id: XM_047419313   ⟹   XP_047275269
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
RefSeq Acc Id: XM_047419314   ⟹   XP_047275270
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,278,204 (+)NCBI
RefSeq Acc Id: XM_054356342   ⟹   XP_054212317
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356343   ⟹   XP_054212318
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356344   ⟹   XP_054212319
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356345   ⟹   XP_054212320
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356346   ⟹   XP_054212321
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356347   ⟹   XP_054212322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356348   ⟹   XP_054212323
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
RefSeq Acc Id: XM_054356349   ⟹   XP_054212324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0628,138,885 - 28,149,946 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001018854 (Get FASTA)   NCBI Sequence Viewer  
  NP_001104509 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274350 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274351 (Get FASTA)   NCBI Sequence Viewer  
  NP_689949 (Get FASTA)   NCBI Sequence Viewer  
  XP_011513164 (Get FASTA)   NCBI Sequence Viewer  
  XP_011513166 (Get FASTA)   NCBI Sequence Viewer  
  XP_016866753 (Get FASTA)   NCBI Sequence Viewer  
  XP_024302306 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275267 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275268 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275269 (Get FASTA)   NCBI Sequence Viewer  
  XP_047275270 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212317 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212318 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212319 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212320 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212321 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212322 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212323 (Get FASTA)   NCBI Sequence Viewer  
  XP_054212324 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH13951 (Get FASTA)   NCBI Sequence Viewer  
  AAH13962 (Get FASTA)   NCBI Sequence Viewer  
  BAG38012 (Get FASTA)   NCBI Sequence Viewer  
  BAG53173 (Get FASTA)   NCBI Sequence Viewer  
  BAG57006 (Get FASTA)   NCBI Sequence Viewer  
  BAG58347 (Get FASTA)   NCBI Sequence Viewer  
  BAG59993 (Get FASTA)   NCBI Sequence Viewer  
  BAG62685 (Get FASTA)   NCBI Sequence Viewer  
  CAA77818 (Get FASTA)   NCBI Sequence Viewer  
  CAD97775 (Get FASTA)   NCBI Sequence Viewer  
  CAI46119 (Get FASTA)   NCBI Sequence Viewer  
  EAX03147 (Get FASTA)   NCBI Sequence Viewer  
  EAX03148 (Get FASTA)   NCBI Sequence Viewer  
  EAX03149 (Get FASTA)   NCBI Sequence Viewer  
  EAX03150 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000478769
  ENSP00000478769.1
  ENSP00000479314
  ENSP00000479314.1
  ENSP00000481024.1
  ENSP00000481707
  ENSP00000481707.1
  ENSP00000484018
  ENSP00000484018.1
  ENSP00000484931
  ENSP00000484931.1
  ENSP00000485228
  ENSP00000485228.1
GenBank Protein Q16670 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_689949   ⟸   NM_152736
- Peptide Label: isoform c
- UniProtKB: A0A087X2F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001018854   ⟸   NM_001023560
- Peptide Label: isoform a
- UniProtKB: A0A024RCN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001104509   ⟸   NM_001111039
- Peptide Label: isoform b
- UniProtKB: Q7Z3Q6 (UniProtKB/Swiss-Prot),   Q5JPG4 (UniProtKB/Swiss-Prot),   Q96A17 (UniProtKB/Swiss-Prot),   Q16670 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001274351   ⟸   NM_001287422
- Peptide Label: isoform d
- UniProtKB: B4DMT1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274350   ⟸   NM_001287421
- Peptide Label: isoform c
- UniProtKB: A0A087X2F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011513164   ⟸   XM_011514862
- Peptide Label: isoform X1
- UniProtKB: A0A024RCN4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011513166   ⟸   XM_011514864
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_016866753   ⟸   XM_017011264
- Peptide Label: isoform X2
- UniProtKB: Q7Z3Q6 (UniProtKB/Swiss-Prot),   Q5JPG4 (UniProtKB/Swiss-Prot),   Q96A17 (UniProtKB/Swiss-Prot),   Q16670 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_024302306   ⟸   XM_024446538
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSP00000485228   ⟸   ENST00000623276
RefSeq Acc Id: ENSP00000478769   ⟸   ENST00000611552
RefSeq Acc Id: ENSP00000479314   ⟸   ENST00000614088
RefSeq Acc Id: ENSP00000481024   ⟸   ENST00000617168
RefSeq Acc Id: ENSP00000484018   ⟸   ENST00000619937
RefSeq Acc Id: ENSP00000484931   ⟸   ENST00000316606
RefSeq Acc Id: ENSP00000481707   ⟸   ENST00000421553
RefSeq Acc Id: XP_047275270   ⟸   XM_047419314
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047275268   ⟸   XM_047419312
- Peptide Label: isoform X4
RefSeq Acc Id: XP_047275269   ⟸   XM_047419313
- Peptide Label: isoform X5
RefSeq Acc Id: XP_047275267   ⟸   XM_047419311
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054212324   ⟸   XM_054356349
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054212317   ⟸   XM_054356342
- Peptide Label: isoform X1
- UniProtKB: A0A024RCN4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054212318   ⟸   XM_054356343
- Peptide Label: isoform X2
- UniProtKB: Q7Z3Q6 (UniProtKB/Swiss-Prot),   Q5JPG4 (UniProtKB/Swiss-Prot),   Q16670 (UniProtKB/Swiss-Prot),   Q96A17 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054212320   ⟸   XM_054356345
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054212322   ⟸   XM_054356347
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054212323   ⟸   XM_054356348
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054212319   ⟸   XM_054356344
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054212321   ⟸   XM_054356346
- Peptide Label: isoform X4
Protein Domains
C2H2-type   SCAN box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q16670-F1-model_v2 AlphaFold Q16670 1-478 view protein structure

Promoters
RGD ID:6872312
Promoter ID:EPDNEW_H9321
Type:initiation region
Name:ZSCAN26_1
Description:zinc finger and SCAN domain containing 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9322  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,267,143 - 28,267,203EPDNEW
RGD ID:6872314
Promoter ID:EPDNEW_H9322
Type:multiple initiation site
Name:ZSCAN26_2
Description:zinc finger and SCAN domain containing 26
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9321  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38628,277,204 - 28,277,264EPDNEW
RGD ID:6805043
Promoter ID:HG_KWN:52676
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001023560,   NM_001111039,   NM_152736,   UC003NKW.2
Position:
Human AssemblyChrPosition (strand)Source
Build 36628,342,709 - 28,343,209 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:12978 AgrOrtholog
COSMIC ZSCAN26 COSMIC
Ensembl Genes ENSG00000197062 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000316606 ENTREZGENE
  ENST00000316606.10 UniProtKB/TrEMBL
  ENST00000421553 ENTREZGENE
  ENST00000421553.7 UniProtKB/TrEMBL
  ENST00000611552 ENTREZGENE
  ENST00000611552.2 UniProtKB/TrEMBL
  ENST00000614088 ENTREZGENE
  ENST00000614088.1 UniProtKB/TrEMBL
  ENST00000617168.4 UniProtKB/TrEMBL
  ENST00000619937 ENTREZGENE
  ENST00000619937.4 UniProtKB/TrEMBL
  ENST00000623276 ENTREZGENE
  ENST00000623276.3 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.4020.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000197062 GTEx
HGNC ID HGNC:12978 ENTREZGENE
Human Proteome Map ZSCAN26 Human Proteome Map
InterPro SCAN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SCAN_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7741 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 7741 ENTREZGENE
OMIM 616474 OMIM
PANTHER FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED UniProtKB/TrEMBL
  PROTEIN ZBED8-RELATED UniProtKB/TrEMBL
  SCAN DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  SI:DKEY-15H8.11 PROTEIN-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 16 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING PROTEIN 30 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 281-RELATED UniProtKB/TrEMBL
Pfam SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37559 PharmGKB
PROSITE SCAN_BOX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SCAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_BED UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Retrovirus capsid dimerization domain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024RCN4 ENTREZGENE, UniProtKB/TrEMBL
  A0A087WXH0_HUMAN UniProtKB/TrEMBL
  A0A087X2F1 ENTREZGENE, UniProtKB/TrEMBL
  B3KTR1_HUMAN UniProtKB/TrEMBL
  B4DMT1 ENTREZGENE, UniProtKB/TrEMBL
  B4DVH3_HUMAN UniProtKB/TrEMBL
  Q16670 ENTREZGENE
  Q5JPG4 ENTREZGENE
  Q7Z3Q6 ENTREZGENE
  Q96A17 ENTREZGENE
  ZSC26_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q5JPG4 UniProtKB/Swiss-Prot
  Q7Z3Q6 UniProtKB/Swiss-Prot
  Q96A17 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-16 ZSCAN26  zinc finger and SCAN domain containing 26  ZNF187  zinc finger protein 187  Symbol and/or name change 5135510 APPROVED