NPY6R (neuropeptide Y receptor Y6 (pseudogene)) - Rat Genome Database

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Gene: NPY6R (neuropeptide Y receptor Y6 (pseudogene)) Homo sapiens
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Symbol: NPY6R
Name: neuropeptide Y receptor Y6 (pseudogene)
RGD ID: 1345559
HGNC Page HGNC:7959
Description: Predicted to enable neuropeptide binding activity and peptide YY receptor activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in membrane. Predicted to be active in neuron projection and plasma membrane.
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FLJ52676; FLJ53561; NPY1RL; NPY6RP; PP2; Y2B
RGD Orthologs
Mouse
Pig
Alliance Genes
More Info more info ...
Related Functional Gene: NPY1R  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385137,801,193 - 137,810,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,808,211 - 137,809,322 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,801,193 - 137,810,755 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,136,882 - 137,146,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,171,361 - 137,173,313 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,171,360 - 137,173,313NCBI
Celera5133,259,175 - 133,268,733 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,328,693 - 132,338,251 (+)NCBIHuRef
CHM1_15136,569,485 - 136,579,043 (+)NCBICHM1_1
T2T-CHM13v2.05138,327,615 - 138,337,173 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8910290   PMID:8910373   PMID:9013614   PMID:11027673   PMID:21873635  


Genomics

Comparative Map Data
NPY6R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385137,801,193 - 137,810,751 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,808,211 - 137,809,322 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl5137,801,193 - 137,810,755 (+)EnsemblGRCh38hg38GRCh38
GRCh375137,136,882 - 137,146,440 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365137,171,361 - 137,173,313 (+)NCBINCBI36Build 36hg18NCBI36
Build 345137,171,360 - 137,173,313NCBI
Celera5133,259,175 - 133,268,733 (+)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5132,328,693 - 132,338,251 (+)NCBIHuRef
CHM1_15136,569,485 - 136,579,043 (+)NCBICHM1_1
T2T-CHM13v2.05138,327,615 - 138,337,173 (+)NCBIT2T-CHM13v2.0
Npy6r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391844,403,175 - 44,410,767 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1844,403,194 - 44,410,767 (+)EnsemblGRCm39 Ensembl
GRCm381844,270,108 - 44,277,700 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1844,270,127 - 44,277,700 (+)EnsemblGRCm38mm10GRCm38
MGSCv371844,429,781 - 44,437,354 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361844,395,458 - 44,403,031 (+)NCBIMGSCv36mm8
Celera1845,649,893 - 45,657,466 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1823.74NCBI
LOC100517462
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.12139,818,408 - 139,823,857 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22145,513,068 - 145,545,078 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:199
Count of miRNA genes:175
Interacting mature miRNAs:185
Transcripts:ENST00000503807, ENST00000510937
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
PMC310777P10  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,143,509 - 137,143,743UniSTSGRCh37
Build 365137,171,408 - 137,171,642RGDNCBI36
Celera5133,265,802 - 133,266,036RGD
Cytogenetic Map5q31.2UniSTS
HuRef5132,335,320 - 132,335,554UniSTS
PMC310777P11  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,145,193 - 137,145,392UniSTSGRCh37
Build 365137,173,092 - 137,173,291RGDNCBI36
Celera5133,267,486 - 133,267,685RGD
Cytogenetic Map5q31.2UniSTS
HuRef5132,337,004 - 132,337,203UniSTS
PMC60063P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375137,144,149 - 137,144,788UniSTSGRCh37
Build 365137,172,048 - 137,172,687RGDNCBI36
Celera5133,266,442 - 133,267,081RGD
Cytogenetic Map5q31.2UniSTS
HuRef5132,335,960 - 132,336,599UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 87 797 93 9 91 6 150 504 118 25 3 3 142
Low 932 582 628 243 581 195 1621 806 1547 218 875 158 52 1 268 1408 1
Below cutoff 1281 1397 865 287 888 178 2315 832 2078 39 425 1204 114 912 1205 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000503807
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,808,211 - 137,809,322 (+)Ensembl
RefSeq Acc Id: ENST00000510937
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,801,193 - 137,810,755 (+)Ensembl
RefSeq Acc Id: ENST00000702443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,801,227 - 137,809,192 (+)Ensembl
RefSeq Acc Id: ENST00000702497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5137,801,227 - 137,801,584 (+)Ensembl
RefSeq Acc Id: NR_002713
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385137,801,193 - 137,810,751 (+)NCBI
GRCh375137,136,882 - 137,146,440 (+)RGD
Build 365137,171,361 - 137,173,313 (+)NCBI Archive
Celera5133,259,175 - 133,268,733 (+)RGD
HuRef5132,328,693 - 132,338,251 (+)ENTREZGENE
CHM1_15136,569,485 - 136,579,043 (+)NCBI
T2T-CHM13v2.05138,327,615 - 138,337,173 (+)NCBI
Sequence:
Reference Protein Sequences

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q99463-F1-model_v2 AlphaFold Q99463 1-290 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:7959 AgrOrtholog
COSMIC NPY6R COSMIC
Ensembl Genes ENSG00000226306 Ensembl
  ENSG00000293504 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000510937 ENTREZGENE
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
GTEx ENSG00000226306 GTEx
  ENSG00000293504 GTEx
HGNC ID HGNC:7959 ENTREZGENE
Human Proteome Map NPY6R Human Proteome Map
InterPro GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  NeuroY6_rcpt UniProtKB/Swiss-Prot
  NPY_rcpt UniProtKB/Swiss-Prot
NCBI Gene 4888 ENTREZGENE
OMIM 601770 OMIM
PANTHER NEUROPEPTIDE Y RECEPTOR UniProtKB/Swiss-Prot
  PTHR24235:SF16 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PharmGKB PA31743 PharmGKB
PRINTS GPCRRHODOPSN UniProtKB/Swiss-Prot
  NRPEPTIDEY6R UniProtKB/Swiss-Prot
  NRPEPTIDEYR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt NPY6R_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary D3DQB4 UniProtKB/Swiss-Prot