HNRNPA1P2 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 2) - Rat Genome Database

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Gene: HNRNPA1P2 (heterogeneous nuclear ribonucleoprotein A1 pseudogene 2) Homo sapiens
Analyze
Symbol: HNRNPA1P2
Name: heterogeneous nuclear ribonucleoprotein A1 pseudogene 2
RGD ID: 1345278
HGNC Page HGNC:13958
Description: INTERACTS WITH chloropicrin
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: dJ372B18.1; HNRPA1P2
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,325,198 - 32,326,521 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl632,325,219 - 32,326,178 (+)EnsemblGRCh38hg38GRCh38
GRCh37632,292,975 - 32,294,298 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,401,353 - 32,402,265 (+)NCBINCBI36Build 36hg18NCBI36
Celera633,860,286 - 33,861,409 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,047,508 - 32,048,631 (+)NCBIHuRef
CHM1_1632,295,644 - 32,296,767 (+)NCBICHM1_1
T2T-CHM13v2.0632,178,483 - 32,179,806 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
chloropicrin  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in HNRNPA1P2
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:180
Count of miRNA genes:175
Interacting mature miRNAs:178
Transcripts:ENST00000432375
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 7 7 6 2 136 2 21 3 28 15 389 9 1 17
Below cutoff 1181 1554 808 194 985 107 2446 927 2171 134 659 866 93 751 1547

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000432375
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl632,325,219 - 32,326,178 (+)Ensembl
RefSeq Acc Id: XR_039222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 36632,401,353 - 32,402,265 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC HNRNPA1P2 COSMIC
Ensembl Genes ENSG00000237285 Ensembl
GTEx ENSG00000237285 GTEx
HGNC ID HGNC:13958 ENTREZGENE
Human Proteome Map HNRNPA1P2 Human Proteome Map
NCBI Gene 100131609 ENTREZGENE