Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
References
References - curated
Additional References at PubMed
Genomics
Clinical Variants
miRNA Target Status
Predicted Target Of
Summary Value | Count of predictions: | 62 | Count of miRNA genes: | 26 | Interacting mature miRNAs: | 28 | Transcripts: | ENST00000412526, ENST00000455939 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Markers in Region
UniSTS:487166 |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | adipose tissue | appendage | entire extraembryonic component | |
High | ||||||||||||||||
Medium | 1 | 38 | ||||||||||||||
Low | 592 | 200 | 51 | 11 | 148 | 11 | 545 | 506 | 443 | 34 | 366 | 205 | 139 | 402 | ||
Below cutoff | 1379 | 1783 | 1008 | 379 | 765 | 263 | 2561 | 998 | 2148 | 141 | 720 | 894 | 119 | 766 | 1636 | 2 |
Sequence
Nucleotide Sequences
RefSeq Acc Id: | ENST00000412526 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000455939 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_026552 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_026553 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
Promoters
RGD ID: | 15097336 | ||||||||
Promoter ID: | EPDNEWNC_H2177 | ||||||||
Type: | single initiation site | ||||||||
Name: | LINC00161_1 | ||||||||
Description: | long intergenic non-protein coding RNA 161 [Source:HGNCSymbol;Acc:HGNC:17138] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | LINC00161 | COSMIC |
Ensembl Genes | ENSG00000226935 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000412526 | ENTREZGENE |
ENST00000455939 | ENTREZGENE | |
GTEx | ENSG00000226935 | GTEx |
HGNC ID | HGNC:17138 | ENTREZGENE |
Human Proteome Map | LINC00161 | Human Proteome Map |
NCBI Gene | 118421 | ENTREZGENE |
PharmGKB | PA164723728 | PharmGKB |
RNAcentral | URS0000017EC0 | RNACentral |
URS000029B422 | RNACentral |
Nomenclature History
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2011-09-01 | LINC00161 | long intergenic non-protein coding RNA 161 | NCRNA00161 | non-protein coding RNA 161 | Symbol and/or name change | 5135510 | APPROVED |