EEF1A1P2 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 2) - Rat Genome Database

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Gene: EEF1A1P2 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 2) Homo sapiens
Analyze
Symbol: EEF1A1P2
Name: eukaryotic translation elongation factor 1 alpha 1 pseudogene 2
RGD ID: 1344814
HGNC Page HGNC:20008
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: EEF1A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381481,661,392 - 81,663,303 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1481,661,428 - 81,662,874 (+)EnsemblGRCh38hg38GRCh38
GRCh371482,127,736 - 82,129,647 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361481,197,429 - 81,199,486 (+)NCBINCBI36Build 36hg18NCBI36
Celera1462,169,439 - 62,171,296 (+)NCBICelera
Cytogenetic Map14q31.1NCBI
HuRef1462,296,803 - 62,298,660 (+)NCBIHuRef
CHM1_11482,065,540 - 82,067,399 (+)NCBICHM1_1
T2T-CHM13v2.01475,876,788 - 75,878,701 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:107
Count of miRNA genes:105
Interacting mature miRNAs:107
Transcripts:ENST00000553854
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 1 1 3 1 1 6 169 1 1
Below cutoff 315 340 206 44 152 23 612 198 354 35 326 241 21 206 378

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000553854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1481,661,428 - 81,662,874 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EEF1A1P2 COSMIC
Ensembl Genes ENSG00000258841 Ensembl, ENTREZGENE
GTEx ENSG00000258841 GTEx
HGNC ID HGNC:20008 ENTREZGENE
Human Proteome Map EEF1A1P2 Human Proteome Map
NCBI Gene 319112 ENTREZGENE
PharmGKB PA134875383 PharmGKB