FTHL18P (ferritin heavy chain like 18, pseudogene)

Gene: FTHL18P (ferritin heavy chain like 18, pseudogene) Homo sapiens

Analyze

Symbol:

FTHL18P

Name:

ferritin heavy chain like 18, pseudogene

RGD ID:

1344497

HGNC Page

HGNC:3988

Description:

INTERACTS WITH bisphenol A

Type:

pseudo (Ensembl: unprocessed_pseudogene)

RefSeq Status:

VALIDATED

Previously known as:

ferritin heavy chain 1 pseudogene 18; ferritin heavy chain like 18; ferritin, heavy polypeptide 1 pseudogene 18; ferritin, heavy polypeptide-like 18; FTH1P18; FTHL18

RGD Orthologs

Rat

Dog

Alliance Genes

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	37,042,875 - 37,043,792 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	37,043,023 - 37,043,571 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	37,060,948 - 37,061,865 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	36,970,869 - 36,971,682 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	41,185,590 - 41,186,068 (-)	NCBI		Celera
Cytogenetic Map	X	p21.1	NCBI
HuRef	X	34,844,334 - 34,845,246 (-)	NCBI		HuRef
CHM1_1	X	37,092,031 - 37,092,943 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	36,638,655 - 36,639,572 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

bisphenol A (EXP)

References

Additional References at PubMed

PMID:7566098

Genomics

Comparative Map Data

FTHL18P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	37,042,875 - 37,043,792 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	37,043,023 - 37,043,571 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	37,060,948 - 37,061,865 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	36,970,869 - 36,971,682 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	41,185,590 - 41,186,068 (-)	NCBI		Celera
Cytogenetic Map	X	p21.1	NCBI
HuRef	X	34,844,334 - 34,845,246 (-)	NCBI		HuRef
CHM1_1	X	37,092,031 - 37,092,943 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	36,638,655 - 36,639,572 (-)	NCBI		T2T-CHM13v2.0

Fthl17b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	16,513,865 - 16,514,699 (+)	NCBI		GRCr8
mRatBN7.2	X	13,841,394 - 13,842,228 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	13,841,394 - 13,842,228 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	13,993,495 - 13,994,329 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	17,490,544 - 17,491,378 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	13,747,121 - 13,747,955 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	14,782,958 - 14,783,792 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	14,782,958 - 14,783,792 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	15,568,713 - 15,569,547 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	25,991,724 - 25,992,558 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	133,887 - 134,721 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

FTHL18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	32,203,684 - 32,206,467 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	19,552,568 - 19,555,328 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	32,247,318 - 32,250,066 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	X	32,330,360 - 32,333,111 (+)	NCBI		UMICH_Zoey_3.1
UMICH_Zoey_3.1	X	31,965,301 - 31,966,149 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	32,295,128 - 32,297,875 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	32,394,976 - 32,397,726 (+)	NCBI		UU_Cfam_GSD_1.0

Variants

Variants in FTHL18P
3 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050385]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000050385]\|See cases [RCV000050385]	ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:Xp22.33-q28	pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x1	copy number loss	Global developmental delay [RCV000050386]\|See cases [RCV000050386]	ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:Xp22.33-q28	pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:237659-156022362)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052327]\|See cases [RCV000052327]	ChrX:237659..156022362 [GRCh38] ChrX:154326..155252027 [GRCh37] ChrX:94326..154905221 [NCBI36] ChrX:Xp22.33-q28	pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x1	copy number loss	Global developmental delay [RCV000052986]\|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052987]\|Intellectual functioning disability [RCV000052988]\|Global developmental delay [RCV000052989]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052987]\|See cases [RCV000052986]	ChrX:26102..155996431 [GRCh38] ChrX:76102..155226096 [GRCh37] ChrX:Xp22.33-q28	pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:14245-155999293)x1	copy number loss	Hypoplastic left heart [RCV000052982]\|See cases [RCV000052982]	ChrX:14245..155999293 [GRCh38] ChrX:64245..155228958 [GRCh37] ChrX:Xp22.33-q28	pathogenic
GRCh38/hg38 Xp22.33-11.21(chrX:10679-55550898)x1	copy number loss	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052971]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052971]\|See cases [RCV000052971]	ChrX:10679..55550898 [GRCh38] ChrX:60679..55577331 [GRCh37] ChrX:679..55594056 [NCBI36] ChrX:Xp22.33-11.21	pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:26102-155996431)x3	copy number gain	Global developmental delay [RCV000052984]\|Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052985]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052985]\|See cases [RCV000052984]	ChrX:26102..155996431 [GRCh38] ChrX:76102..155226096 [GRCh37] ChrX:Xp22.33-q28	pathogenic
GRCh38/hg38 Xp22.33-q28(chrX:10679-156013167)x3	copy number gain	See cases [RCV000050385]	ChrX:10679..156013167 [GRCh38] ChrX:60679..155242832 [GRCh37] ChrX:679..154896026 [NCBI36] ChrX:Xp22.33-q28	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	654
Count of miRNA genes:	328
Interacting mature miRNAs:	342
Transcripts:	ENST00000397453, ENST00000412071
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	adipose tissue	appendage
High
Medium											152
Low	1		1		2		5	3			223	2		1	3
Below cutoff	34	35	56	14	24	12	92	48	161	7	36	46	3	22	53

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_171164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA383232	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX842568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HY046847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HY233350	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000412071

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	X	37,043,023 - 37,043,571 (-)	Ensembl

RefSeq Acc Id:

NR_171164

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	X	37,042,875 - 37,043,792 (-)	NCBI
T2T-CHM13v2.0	X	36,638,655 - 36,639,572 (-)	NCBI

Sequence:

show sequence

AACGGTCTCCACCGCCCACTTCTGGTCCCTTCACAGAATCAGCGACCACACTACCGCCGGGCCC
GGAGGACCCCGCCCTCCACCAGCCGCCGCTGTCGTCCACCATGGTGGTGCTCCGAGGACCCCAC
CGCTGCCGCCACTGCCCACGCCGATGCCGCTACCCGCTCCGGGCCCCTGGCAAACCCACTGCTT
TTCCCCTCCTCCCAGCGCCCGCGCTGCCCGCCCTGGGCCCGCTGTCGCAGGTGCAACGGTACCA
CCACCCCAGCTGTGAGGCTGCCATCAACACCCACATCAGCCTGGAGCTCCACGCATCCTATGTG
TACCTGTCCATGGCCTTCTACTTCGACCAGGACGACGCGGCCCTGGAGCACTTTGACTGCTACT
TCCTGTGCCAGTTGCAGGAGAAAAGGGAGCACGCCCAGGAGCTGATGAGGCTGCACAACCTGCG
CGGTGGCCGCATCTGCCTTCATGACGTCGGGAAGCCAGAGGGCCAAGGCTGGGAGAGCGGGCTC
AAGGCCATGGAGTGCGCCTTCCACCTGGAGAAGAACATCAACCAGAGCCTCCTGGAGCTGCACC
AGCTGGCCAAGGAGAACGGCGACCCCCAGCTTTGCGACTTCCTGGAGAACCACTTCCTGAACCA
GCAGGCCAAGACCATCAAAGAGCTGGGTGGCTACCTGAGCAACCTGCGCAAGATGGGGTCCCCG
GAAGCAGGCCTGGCAGAGTACCTCTTTAACAAGCTCACCCTGGGCCGCAGCCAGAAACACACCT
GAGCCCAGACAGGCCCCTCAGCCATGGGGTGCCTTCCCCTGCTCGCGCCACCAGGCGGGACGTC
CATGTTGCCTTTTCAGAACATTCTCTTCATTTTTCTCCTCTCAGTTTGACCATTGTTAACAATA
AAGTTATCTGTTCTCAAAGCAA

hide sequence

Protein Sequences


GenBank Protein	EAW99084	(Get FASTA)	NCBI Sequence Viewer

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:3988	AgrOrtholog
COSMIC	FTHL18P	COSMIC
Ensembl Genes	ENSG00000243048	Ensembl
GTEx	ENSG00000243048	GTEx
HGNC ID	HGNC:3988	ENTREZGENE
Human Proteome Map	FTHL18P	Human Proteome Map
NCBI Gene	441490	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-15	FTHL18P	ferritin heavy chain like 18, pseudogene	FTHL18	ferritin heavy chain like 18	Symbol and/or name change	19259463	PROVISIONAL
2019-09-12	FTHL18	ferritin heavy chain like 18	FTH1P18	ferritin heavy chain 1 pseudogene 18	Symbol and/or name change	5135510	APPROVED
2016-05-31	FTH1P18	ferritin heavy chain 1 pseudogene 18		ferritin, heavy polypeptide 1 pseudogene 18	Symbol and/or name change	5135510	APPROVED
2011-07-27	FTH1P18	ferritin, heavy polypeptide 1 pseudogene 18	FTHL18	ferritin, heavy polypeptide-like 18 pseudogene	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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