FSCN1 (fascin actin-bundling protein 1) - Rat Genome Database
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Gene: FSCN1 (fascin actin-bundling protein 1) Homo sapiens
Analyze
Symbol: FSCN1
Name: fascin actin-bundling protein 1
RGD ID: 1344433
HGNC Page HGNC
Description: Exhibits actin filament binding activity and drug binding activity. Involved in several processes, including microspike assembly; positive regulation of cellular component organization; and regulation of plasma membrane bounded cell projection assembly. Localizes to several cellular components, including actin cytoskeleton; microspike; and ruffle. Biomarker of cholangiocarcinoma; common bile duct neoplasm; pancreatic cancer; and pancreatic ductal carcinoma.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 55 kDa actin-bundling protein; actin bundling protein; FAN1; fascin; fascin homolog 1, actin-bundling protein; FLJ38511; FLJ43305; HSN; p55; Singed, drosophila, homolog-like; singed-like (fascin homolog, sea urchin); singed-like protein; SNL
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: FSCN1P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl75,592,816 - 5,606,655 (+)EnsemblGRCh38hg38GRCh38
GRCh3875,592,816 - 5,606,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3775,632,436 - 5,646,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,598,980 - 5,612,812 (+)NCBINCBI36hg18NCBI36
Build 3475,405,694 - 5,419,526NCBI
Celera75,592,071 - 5,605,904 (+)NCBI
Cytogenetic Map7p22.1NCBI
HuRef75,544,716 - 5,558,303 (+)NCBIHuRef
CHM1_175,632,035 - 5,645,887 (+)NCBICHM1_1
CRA_TCAGchr7v275,678,781 - 5,692,632 (+)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (EXP)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-naphthylamine  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (EXP)
antirheumatic drug  (EXP)
arsenous acid  (EXP)
ATP  (EXP,ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (EXP,ISO)
buta-1,3-diene  (ISO)
butanal  (EXP)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
chloropicrin  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (EXP)
cyclophosphamide  (EXP)
cyclosporin A  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (EXP)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dicrotophos  (EXP)
dioxygen  (ISO)
doxorubicin  (EXP)
Enterolactone  (EXP)
enzyme inhibitor  (EXP)
fenvalerate  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
latrunculin A  (ISO)
lipopolysaccharide  (EXP,ISO)
lovastatin  (ISO)
lysophosphatidylcholine  (ISO)
methotrexate  (EXP)
N-nitrosodiethylamine  (ISO)
Niclosamide  (EXP,ISO)
nicotine  (EXP)
paclitaxel  (EXP)
pentanal  (EXP)
perfluorooctanoic acid  (EXP)
phorbol 13-acetate 12-myristate  (ISO)
pioglitazone  (EXP)
pirinixic acid  (ISO)
progesterone  (EXP)
propanal  (EXP)
quartz  (EXP)
quinoline  (EXP)
silicon dioxide  (EXP,ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenite  (ISO)
succimer  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tebuconazole  (EXP)
tetrachloromethane  (ISO)
trichostatin A  (EXP)
troglitazone  (EXP)
tunicamycin  (EXP)
urethane  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vincristine  (EXP)
warfarin  (ISO)
zinc sulfate  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
actin cytoskeleton  (IBA,IDA)
cell cortex  (IEA)
cell projection membrane  (IBA,IDA)
cell-cell junction  (IDA)
cytoplasm  (IBA,IDA,IEA)
cytoskeleton  (IDA,IEA)
cytosol  (IDA,TAS)
dendrite  (ISO)
extracellular exosome  (HDA)
filopodium  (IBA,IDA)
growth cone  (IBA,ISS)
lamellipodium  (IBA,ISS)
microspike  (IDA)
microvillus  (IBA,IDA)
obsolete invadopodium  (IEA)
plasma membrane  (ISO)
podosome  (IDA)
ruffle  (IBA,IDA)
stress fiber  (IDA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1602151   PMID:3525578   PMID:3886649   PMID:7933116   PMID:8068206   PMID:8579121   PMID:8647875   PMID:8970159   PMID:8999969   PMID:9033270   PMID:9558080   PMID:9565110  
PMID:9571235   PMID:10026156   PMID:10783262   PMID:12100631   PMID:12139639   PMID:12477932   PMID:12592367   PMID:12789270   PMID:12902483   PMID:14532112   PMID:14535950   PMID:14702039  
PMID:15161933   PMID:15451513   PMID:15489334   PMID:15671545   PMID:15882811   PMID:16049480   PMID:16169070   PMID:16533778   PMID:16977579   PMID:17029629   PMID:17255360   PMID:17353931  
PMID:17473384   PMID:17510372   PMID:17638895   PMID:17671164   PMID:18029348   PMID:18283337   PMID:18343949   PMID:18587253   PMID:18599451   PMID:18716283   PMID:18776588   PMID:18851787  
PMID:19061289   PMID:19115695   PMID:19133007   PMID:19340314   PMID:19483633   PMID:19657566   PMID:19729655   PMID:19738201   PMID:19738613   PMID:19741544   PMID:19759191   PMID:19818782  
PMID:19819618   PMID:20001345   PMID:20056838   PMID:20137952   PMID:20160723   PMID:20360068   PMID:20366178   PMID:20393565   PMID:20434460   PMID:20458337   PMID:20596974   PMID:20603015  
PMID:20634891   PMID:20701077   PMID:20713986   PMID:20819441   PMID:20851411   PMID:20888270   PMID:21089665   PMID:21223690   PMID:21258769   PMID:21300980   PMID:21319273   PMID:21323792  
PMID:21351259   PMID:21390241   PMID:21475911   PMID:21491467   PMID:21498718   PMID:21565611   PMID:21618240   PMID:21685497   PMID:21706053   PMID:21764699   PMID:21771028   PMID:21873635  
PMID:21900206   PMID:21914811   PMID:21937440   PMID:21975550   PMID:22005766   PMID:22076152   PMID:22110277   PMID:22128198   PMID:22304920   PMID:22586326   PMID:22658674   PMID:22730814  
PMID:22784357   PMID:22883572   PMID:22939629   PMID:23030700   PMID:23156804   PMID:23184945   PMID:23196799   PMID:23209815   PMID:23221510   PMID:23252866   PMID:23333304   PMID:23393326  
PMID:23428845   PMID:23428871   PMID:23454725   PMID:23633513   PMID:23898208   PMID:23899558   PMID:23986556   PMID:24085294   PMID:24196787   PMID:24235142   PMID:24378809   PMID:24599125  
PMID:24642628   PMID:24930964   PMID:24977742   PMID:25105941   PMID:25155376   PMID:25198665   PMID:25213863   PMID:25433493   PMID:25468996   PMID:25535872   PMID:25601713   PMID:25665578  
PMID:25808493   PMID:25815687   PMID:25831081   PMID:25882880   PMID:25921289   PMID:25963833   PMID:26010149   PMID:26173501   PMID:26211585   PMID:26238532   PMID:26344197   PMID:26349603  
PMID:26362828   PMID:26496610   PMID:26503504   PMID:26522130   PMID:26618866   PMID:26647829   PMID:26749573   PMID:26777405   PMID:26886283   PMID:26945069   PMID:27184764   PMID:27350089  
PMID:27356635   PMID:27406586   PMID:27488323   PMID:27502039   PMID:27554857   PMID:27566402   PMID:27634302   PMID:27666967   PMID:27776189   PMID:27819326   PMID:27879315   PMID:28186968  
PMID:28230028   PMID:28251354   PMID:28298427   PMID:28378594   PMID:28393215   PMID:28488774   PMID:28515276   PMID:28653739   PMID:28922730   PMID:29052029   PMID:29065267   PMID:29117863  
PMID:29128334   PMID:29142206   PMID:29148041   PMID:29162880   PMID:29371698   PMID:29458026   PMID:29467282   PMID:29496994   PMID:29507755   PMID:29615496   PMID:29772238   PMID:29851865  
PMID:29861382   PMID:29955894   PMID:29970665   PMID:29992166   PMID:30021884   PMID:30026490   PMID:30056535   PMID:30060981   PMID:30231243   PMID:30353022   PMID:30417585   PMID:30463901  
PMID:30471916   PMID:30476173   PMID:30542700   PMID:30654764   PMID:30823924   PMID:31043585   PMID:31239290   PMID:31268159   PMID:31271056   PMID:31273628   PMID:31287215   PMID:31369196  
PMID:31405213   PMID:31509745   PMID:31586073   PMID:31783819   PMID:31889512   PMID:31980649   PMID:32089062   PMID:32146795   PMID:32339607   PMID:32392198   PMID:32529326  


Genomics

Comparative Map Data
FSCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl75,592,816 - 5,606,655 (+)EnsemblGRCh38hg38GRCh38
GRCh3875,592,816 - 5,606,655 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3775,632,436 - 5,646,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3675,598,980 - 5,612,812 (+)NCBINCBI36hg18NCBI36
Build 3475,405,694 - 5,419,526NCBI
Celera75,592,071 - 5,605,904 (+)NCBI
Cytogenetic Map7p22.1NCBI
HuRef75,544,716 - 5,558,303 (+)NCBIHuRef
CHM1_175,632,035 - 5,645,887 (+)NCBICHM1_1
CRA_TCAGchr7v275,678,781 - 5,692,632 (+)NCBI
Fscn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395142,946,110 - 142,958,944 (+)NCBIGRCm39mm39
GRCm385142,960,355 - 142,973,189 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5142,960,343 - 142,973,185 (+)EnsemblGRCm38mm10GRCm38
MGSCv375143,722,034 - 143,734,868 (+)NCBIGRCm37mm9NCBIm37
MGSCv365143,225,511 - 143,238,323 (+)NCBImm8
Celera5140,008,743 - 140,021,597 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map581.84NCBI
Fscn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01213,655,459 - 13,668,595 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,656,554 - 13,668,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,688,989 - 15,702,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1213,390,657 - 13,403,285 (-)NCBICelera
Cytogenetic Map12p11NCBI
Fscn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546010,402,855 - 10,412,710 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546010,402,855 - 10,412,459 (+)NCBIChiLan1.0ChiLan1.0
FSCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.175,865,307 - 5,877,366 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v075,848,902 - 5,862,756 (+)NCBIMhudiblu_PPA_v0panPan3
FSCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl612,354,599 - 12,370,808 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1612,360,849 - 12,370,906 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fscn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936765609,894 - 619,417 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,134,170 - 4,145,394 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,134,173 - 4,143,275 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.234,776,501 - 4,785,603 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FSCN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12816,127,033 - 16,142,285 (-)NCBI
ChlSab1.1 Ensembl2816,127,015 - 16,142,337 (-)Ensembl
Fscn1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474028,038,216 - 28,047,252 (-)NCBI

Position Markers
D7S2201  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3775,630,655 - 5,630,762UniSTSGRCh37
Build 3675,597,181 - 5,597,288RGDNCBI36
Celera75,590,272 - 5,590,379RGD
Cytogenetic Map7p22UniSTS
HuRef75,542,935 - 5,543,042UniSTS
CRA_TCAGchr7v275,677,000 - 5,677,107UniSTS
Marshfield Genetic Map710.68RGD
Marshfield Genetic Map710.68UniSTS
deCODE Assembly Map711.92UniSTS
RH28419  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371534,789,149 - 34,789,236UniSTSGRCh37
GRCh3775,646,155 - 5,646,242UniSTSGRCh37
Build 3675,612,681 - 5,612,768RGDNCBI36
Celera75,605,773 - 5,605,860RGD
Celera1511,597,929 - 11,598,016UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map15q14UniSTS
HuRef75,558,171 - 5,558,258UniSTS
HuRef1511,656,486 - 11,656,573UniSTS
CRA_TCAGchr7v275,692,500 - 5,692,587UniSTS
G62033  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371534,789,149 - 34,789,253UniSTSGRCh37
GRCh3775,646,155 - 5,646,259UniSTSGRCh37
Build 3675,612,681 - 5,612,785RGDNCBI36
Celera75,605,773 - 5,605,877RGD
Celera1511,597,929 - 11,598,033UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map15q14UniSTS
HuRef75,558,171 - 5,558,275UniSTS
HuRef1511,656,486 - 11,656,590UniSTS
CRA_TCAGchr7v275,692,500 - 5,692,604UniSTS
FSCN1__6758  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3775,645,414 - 5,646,275UniSTSGRCh37
GRCh371534,788,412 - 34,789,269UniSTSGRCh37
Build 3675,611,940 - 5,612,801RGDNCBI36
Celera1511,597,192 - 11,598,049UniSTS
Celera75,605,032 - 5,605,893RGD
HuRef1511,655,749 - 11,656,606UniSTS
HuRef75,557,430 - 5,558,291UniSTS
CRA_TCAGchr7v275,691,759 - 5,692,620UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
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Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR143hsa-miR-143-3pMirtarbaseexternal_infoWestern blotNon-Functional MTI21218087
MIR143hsa-miR-143-3pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI22457808
MIR143hsa-miR-143-3pOncomiRDBexternal_infoNANA22457808
MIR145hsa-miR-145-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI20160723
MIR145hsa-miR-145-5pMirtarbaseexternal_infoWestern blotNon-Functional MTI21218087
MIR145hsa-miR-145-5pMirtarbaseexternal_infoLuciferase reporter assay//Microarray//qRT-PCR//WeFunctional MTI21351259
MIR145hsa-miR-145-5pMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blot//Functional MTI20198616
MIR145hsa-miR-145-5pMirtarbaseexternal_infoReporter assayFunctional MTI21258769
MIR145hsa-miR-145-5pTarbaseexternal_infoqPCRPOSITIVE
MIR145hsa-miR-145-5pTarbaseexternal_infoWesternblitPOSITIVE
MIR145hsa-miR-145-5pOncomiRDBexternal_infoNANA22457808
MIR145hsa-miR-145-5pOncomiRDBexternal_infoNANA21723890
MIR145hsa-miR-145-5pOncomiRDBexternal_infoNANA21351259
MIR145hsa-miR-145-5pOncomiRDBexternal_infoNANA21258769
MIR145hsa-miR-145-5pOncomiRDBexternal_infoNANA20160723
MIR133A2hsa-miR-133aTarbaseexternal_infoReporter GenePOSITIVE
MIR133Bhsa-miR-133bMirtarbaseexternal_infoLuciferase reporter assay//qRT-PCR//Western blot//Functional MTI20198616
MIR133Bhsa-miR-133bMirtarbaseexternal_infoReporter assay;Western blot;qRT-PCRFunctional MTI21351259
MIR133Bhsa-miR-133bTarbaseexternal_infoqPCRPOSITIVE
MIR133Bhsa-miR-133bTarbaseexternal_infoWesternblitPOSITIVE
MIR133Bhsa-miR-133bOncomiRDBexternal_infoNANA21351259

Predicted Target Of
Summary Value
Count of predictions:2880
Count of miRNA genes:771
Interacting mature miRNAs:924
Transcripts:ENST00000340250, ENST00000382361, ENST00000405801, ENST00000444748, ENST00000447103, ENST00000473330
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High 1 3 2 4 4 4 5 5
Medium 1645 1463 1438 342 941 194 3285 797 3677 330 1375 1572 157 1172 1764 4
Low 782 1500 284 280 893 270 1060 1387 32 84 69 31 10 32 1017
Below cutoff 8 22 1 100 1 9 11 16 8 4 3 1 7 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_030004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_003088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC006483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK316607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY044229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC007988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI546742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT006636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU629782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU486847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GQ900932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HI574224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U03057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U09873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000382361   ⟹   ENSP00000371798
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl75,592,816 - 5,606,655 (+)Ensembl
RefSeq Acc Id: ENST00000405801   ⟹   ENSP00000383982
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl75,594,686 - 5,603,998 (+)Ensembl
RefSeq Acc Id: ENST00000444748   ⟹   ENSP00000404506
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl75,593,848 - 5,603,983 (+)Ensembl
RefSeq Acc Id: ENST00000447103   ⟹   ENSP00000409967
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl75,594,547 - 5,603,946 (+)Ensembl
RefSeq Acc Id: ENST00000473330
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl75,602,872 - 5,606,654 (+)Ensembl
RefSeq Acc Id: NM_003088   ⟹   NP_003079
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3875,592,816 - 5,606,655 (+)NCBI
GRCh3775,632,436 - 5,646,287 (+)NCBI
Build 3675,598,980 - 5,612,812 (+)NCBI Archive
HuRef75,544,716 - 5,558,303 (+)NCBI
CHM1_175,632,035 - 5,645,887 (+)NCBI
CRA_TCAGchr7v275,678,781 - 5,692,632 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_003079   ⟸   NM_003088
- UniProtKB: Q16658 (UniProtKB/Swiss-Prot),   B3KTA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000404506   ⟸   ENST00000444748
RefSeq Acc Id: ENSP00000383982   ⟸   ENST00000405801
RefSeq Acc Id: ENSP00000409967   ⟸   ENST00000447103
RefSeq Acc Id: ENSP00000371798   ⟸   ENST00000382361
Protein Domains
Fascin

Promoters
RGD ID:7209867
Promoter ID:EPDNEW_H10680
Type:multiple initiation site
Name:FSCN1_1
Description:fascin actin-bundling protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3875,592,816 - 5,592,876EPDNEW
RGD ID:6805681
Promoter ID:HG_KWN:56167
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000340250,   OTTHUMT00000207153,   OTTHUMT00000324033
Position:
Human AssemblyChrPosition (strand)Source
Build 3675,599,026 - 5,600,027 (+)MPROMDB
RGD ID:6805680
Promoter ID:HG_KWN:56168
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000324034,   OTTHUMT00000324035
Position:
Human AssemblyChrPosition (strand)Source
Build 3675,600,306 - 5,600,942 (+)MPROMDB
RGD ID:6805682
Promoter ID:HG_KWN:56169
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:UC003SOV.1,   UC003SOW.1
Position:
Human AssemblyChrPosition (strand)Source
Build 3675,608,646 - 5,609,487 (+)MPROMDB
RGD ID:6805683
Promoter ID:HG_KWN:56170
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:OTTHUMT00000324036
Position:
Human AssemblyChrPosition (strand)Source
Build 3675,609,761 - 5,610,312 (+)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1		 pathogenic
GRCh38/hg38 7p22.1(chr7:5062000-6692258)x1 copy number loss See cases [RCV000052256] Chr7:5062000..6692258 [GRCh38]
Chr7:5101631..6731889 [GRCh37]
Chr7:5068157..6698414 [NCBI36]
Chr7:7p22.1		 pathogenic
GRCh38/hg38 7p22.1(chr7:5062000-5825183)x1 copy number loss See cases [RCV000052263] Chr7:5062000..5825183 [GRCh38]
Chr7:5101631..5864814 [GRCh37]
Chr7:5068157..5831340 [NCBI36]
Chr7:7p22.1		 pathogenic
GRCh38/hg38 7p22.1(chr7:5117519-5880375)x1 copy number loss See cases [RCV000052266] Chr7:5117519..5880375 [GRCh38]
Chr7:5157150..5920006 [GRCh37]
Chr7:5123676..5886532 [NCBI36]
Chr7:7p22.1		 pathogenic
GRCh38/hg38 7p22.1(chr7:5331115-6031221)x1 copy number loss See cases [RCV000052268] Chr7:5331115..6031221 [GRCh38]
Chr7:5370746..6070852 [GRCh37]
Chr7:5337272..6037378 [NCBI36]
Chr7:7p22.1		 pathogenic
GRCh38/hg38 7p22.3-22.1(chr7:45130-5880375)x1 copy number loss See cases [RCV000052249] Chr7:45130..5880375 [GRCh38]
Chr7:45130..5920006 [GRCh37]
Chr7:140213..5886532 [NCBI36]
Chr7:7p22.3-22.1		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.1(chr7:4876621-6492003)x3 copy number gain See cases [RCV000053408] Chr7:4876621..6492003 [GRCh38]
Chr7:4916252..6531634 [GRCh37]
Chr7:4882778..6498159 [NCBI36]
Chr7:7p22.1		 uncertain significance
GRCh38/hg38 7p22.3-22.1(chr7:45130-6270185)x3 copy number gain See cases [RCV000053527] Chr7:45130..6270185 [GRCh38]
Chr7:45130..6309816 [GRCh37]
Chr7:140213..6276341 [NCBI36]
Chr7:7p22.3-22.1		 pathogenic
GRCh38/hg38 7p22.3-15.3(chr7:53985-24361531)x3 copy number gain See cases [RCV000053528] Chr7:53985..24361531 [GRCh38]
Chr7:53985..24401150 [GRCh37]
Chr7:149068..24367675 [NCBI36]
Chr7:7p22.3-15.3		 pathogenic
GRCh38/hg38 7p22.3-21.3(chr7:54185-8274834)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053529]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053529]|See cases [RCV000053529] Chr7:54185..8274834 [GRCh38]
Chr7:54185..8314464 [GRCh37]
Chr7:149268..8280989 [NCBI36]
Chr7:7p22.3-21.3		 pathogenic
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2		 pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:2789546-9066894)x3 copy number gain See cases [RCV000515563] Chr7:2789546..9066894 [GRCh37]
Chr7:7p22.3-21.3		 pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3		 pathogenic
GRCh38/hg38 7p22.1(chr7:5448387-6276950)x1 copy number loss See cases [RCV000135830] Chr7:5448387..6276950 [GRCh38]
Chr7:5488018..6316581 [GRCh37]
Chr7:5454544..6283106 [NCBI36]
Chr7:7p22.1		 likely pathogenic|benign
GRCh38/hg38 7p22.1(chr7:5578185-5775451)x1 copy number loss See cases [RCV000135626] Chr7:5578185..5775451 [GRCh38]
Chr7:5617816..5815082 [GRCh37]
Chr7:5584342..5781608 [NCBI36]
Chr7:7p22.1		 likely pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:54185-26827634)x3 copy number gain See cases [RCV000136557] Chr7:54185..26827634 [GRCh38]
Chr7:54185..26867253 [GRCh37]
Chr7:149268..26833778 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh38/hg38 7p22.3-22.1(chr7:54185-6638027)x3 copy number gain See cases [RCV000136731] Chr7:54185..6638027 [GRCh38]
Chr7:54185..6677658 [GRCh37]
Chr7:149268..6644183 [NCBI36]
Chr7:7p22.3-22.1		 pathogenic
GRCh38/hg38 7p22.3-21.3(chr7:45130-7252065)x3 copy number gain See cases [RCV000137524] Chr7:45130..7252065 [GRCh38]
Chr7:45130..7291696 [GRCh37]
Chr7:140213..7258221 [NCBI36]
Chr7:7p22.3-21.3		 pathogenic
GRCh38/hg38 7p22.3-15.3(chr7:45130-25221165)x3 copy number gain See cases [RCV000137824] Chr7:45130..25221165 [GRCh38]
Chr7:45130..25260784 [GRCh37]
Chr7:140213..25227309 [NCBI36]
Chr7:7p22.3-15.3		 pathogenic
GRCh38/hg38 7p22.1(chr7:4849987-5760088)x3 copy number gain See cases [RCV000137977] Chr7:4849987..5760088 [GRCh38]
Chr7:4889618..5799719 [GRCh37]
Chr7:4856144..5766245 [NCBI36]
Chr7:7p22.1		 likely pathogenic
GRCh38/hg38 7p22.1(chr7:5331115-6340621)x3 copy number gain See cases [RCV000138729] Chr7:5331115..6340621 [GRCh38]
Chr7:5370746..6380252 [GRCh37]
Chr7:5337272..6346777 [NCBI36]
Chr7:7p22.1		 uncertain significance
GRCh38/hg38 7p22.1(chr7:5331115-6751518)x3 copy number gain See cases [RCV000139037] Chr7:5331115..6751518 [GRCh38]
Chr7:5370746..6791149 [GRCh37]
Chr7:5337272..6757674 [NCBI36]
Chr7:7p22.1		 likely pathogenic
GRCh38/hg38 7p22.1(chr7:5378314-5849934)x4 copy number gain See cases [RCV000139038] Chr7:5378314..5849934 [GRCh38]
Chr7:5417945..5889565 [GRCh37]
Chr7:5384471..5856091 [NCBI36]
Chr7:7p22.1		 likely pathogenic
GRCh38/hg38 7p22.1(chr7:5171797-5635439)x3 copy number gain See cases [RCV000140259] Chr7:5171797..5635439 [GRCh38]
Chr7:5211428..5675070 [GRCh37]
Chr7:5177954..5641596 [NCBI36]
Chr7:7p22.1		 uncertain significance
GRCh38/hg38 7p22.3-15.2(chr7:1698124-27207295)x3 copy number gain See cases [RCV000143060] Chr7:1698124..27207295 [GRCh38]
Chr7:1737760..27246914 [GRCh37]
Chr7:1704286..27213439 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:43360-27196404)x3 copy number gain See cases [RCV000143586] Chr7:43360..27196404 [GRCh38]
Chr7:43360..27236023 [GRCh37]
Chr7:138443..27202548 [NCBI36]
Chr7:7p22.3-15.2		 pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:183556-12746636)x3 copy number gain See cases [RCV000449446] Chr7:183556..12746636 [GRCh37]
Chr7:7p22.3-21.3		 pathogenic
GRCh37/hg19 7p22.3-21.1(chr7:43360-17656861)x3 copy number gain See cases [RCV000449347] Chr7:43360..17656861 [GRCh37]
Chr7:7p22.3-21.1		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43360-159119707)x1 copy number loss See cases [RCV000446044] Chr7:43360..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.1(chr7:4756391-5934779)x3 copy number gain See cases [RCV000448466] Chr7:4756391..5934779 [GRCh37]
Chr7:7p22.1		 uncertain significance
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707) copy number gain See cases [RCV000510686] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.1(chr7:5268201-5803877)x3 copy number gain See cases [RCV000510522] Chr7:5268201..5803877 [GRCh37]
Chr7:7p22.1		 uncertain significance
GRCh37/hg19 7p22.3-15.3(chr7:43360-23674928)x3 copy number gain See cases [RCV000510652] Chr7:43360..23674928 [GRCh37]
Chr7:7p22.3-15.3		 pathogenic
GRCh37/hg19 7p22.3-14.3(chr7:704573-29257946)x3 copy number gain See cases [RCV000510275] Chr7:704573..29257946 [GRCh37]
Chr7:7p22.3-14.3		 pathogenic
GRCh37/hg19 7p22.1(chr7:4839046-7110343)x3 copy number gain See cases [RCV000511909] Chr7:4839046..7110343 [GRCh37]
Chr7:7p22.1		 likely pathogenic
GRCh37/hg19 7p22.3-21.2(chr7:43360-14664158)x3 copy number gain See cases [RCV000511772] Chr7:43360..14664158 [GRCh37]
Chr7:7p22.3-21.2		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:43361-159119707)x3 copy number gain See cases [RCV000511549] Chr7:43361..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:43360-12098696)x3 copy number gain See cases [RCV000510950] Chr7:43360..12098696 [GRCh37]
Chr7:7p22.3-21.3		 pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:43360-11567351)x3 copy number gain See cases [RCV000512505] Chr7:43360..11567351 [GRCh37]
Chr7:7p22.3-21.3		 pathogenic
GRCh37/hg19 7p22.1(chr7:5340345-5641546)x1 copy number loss not provided [RCV000682818] Chr7:5340345..5641546 [GRCh37]
Chr7:7p22.1		 uncertain significance
GRCh37/hg19 7p22.1(chr7:5606650-5974130)x3 copy number gain not provided [RCV000682836] Chr7:5606650..5974130 [GRCh37]
Chr7:7p22.1		 likely pathogenic
GRCh37/hg19 7p22.1(chr7:5626053-5934779)x3 copy number gain not provided [RCV000682820] Chr7:5626053..5934779 [GRCh37]
Chr7:7p22.1		 uncertain significance
GRCh37/hg19 7p22.2-21.3(chr7:4388620-7302293)x3 copy number gain not provided [RCV000682900] Chr7:4388620..7302293 [GRCh37]
Chr7:7p22.2-21.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:44935-159126310)x3 copy number gain not provided [RCV000746280] Chr7:44935..159126310 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10704-159122532)x3 copy number gain not provided [RCV000746278] Chr7:10704..159122532 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:10239-13116278)x3 copy number gain not provided [RCV000746277] Chr7:10239..13116278 [GRCh37]
Chr7:7p22.3-21.3		 pathogenic
GRCh37/hg19 7p22.3-q36.3(chr7:10365-159119707)x3 copy number gain not provided [RCV000848126] Chr7:10365..159119707 [GRCh37]
Chr7:7p22.3-q36.3		 pathogenic
GRCh37/hg19 7p22.1(chr7:5218459-6319917)x3 copy number gain not provided [RCV000845805] Chr7:5218459..6319917 [GRCh37]
Chr7:7p22.1		 pathogenic
GRCh37/hg19 7p22.3-21.1(chr7:43376-19520619)x3 copy number gain not provided [RCV000848100] Chr7:43376..19520619 [GRCh37]
Chr7:7p22.3-21.1		 pathogenic
GRCh37/hg19 7p22.1(chr7:5606650-6185838)x3 copy number gain not provided [RCV000848793] Chr7:5606650..6185838 [GRCh37]
Chr7:7p22.1		 pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:1648373-10627513)x3 copy number gain not provided [RCV001005891] Chr7:1648373..10627513 [GRCh37]
Chr7:7p22.3-21.3		 pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:11148 AgrOrtholog
COSMIC FSCN1 COSMIC
Ensembl Genes ENSG00000075618 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000371798 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000383982 UniProtKB/TrEMBL
  ENSP00000404506 UniProtKB/TrEMBL
  ENSP00000409967 UniProtKB/TrEMBL
Ensembl Transcript ENST00000382361 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000405801 UniProtKB/TrEMBL
  ENST00000444748 UniProtKB/TrEMBL
  ENST00000447103 UniProtKB/TrEMBL
GTEx ENSG00000075618 GTEx
HGNC ID HGNC:11148 ENTREZGENE
Human Proteome Map FSCN1 Human Proteome Map
InterPro Actin-crosslinking UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fascin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fascin-domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fascin_metazoans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FSCN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:6624 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 6624 ENTREZGENE
OMIM 602689 OMIM
PANTHER PTHR10551 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10551:SF23 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Fascin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA128394534 PharmGKB
PIRSF Fascin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50405 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Hs.118400 ENTREZGENE
UniProt A0A0A0MSB2_HUMAN UniProtKB/TrEMBL
  A0A384MEG1_HUMAN UniProtKB/TrEMBL
  B3KTA3 ENTREZGENE, UniProtKB/TrEMBL
  C9JFC0_HUMAN UniProtKB/TrEMBL
  C9JPH9_HUMAN UniProtKB/TrEMBL
  FSCN1_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A6NI89 UniProtKB/Swiss-Prot
  B2RE97 UniProtKB/Swiss-Prot
  Q96IC5 UniProtKB/Swiss-Prot
  Q96IH1 UniProtKB/Swiss-Prot
  Q9BRF1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-02-11 FSCN1  fascin actin-bundling protein 1    fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)  Symbol and/or name change 5135510 APPROVED
2011-09-27 FSCN1  fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)  FSCN1  fascin homolog 1, actin-bundling protein (Strongylocentrotus purpuratus)  Symbol and/or name change 5135510 APPROVED