ATF4P4 (activating transcription factor 4 pseudogene 4) - Rat Genome Database

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Gene: ATF4P4 (activating transcription factor 4 pseudogene 4) Homo sapiens
Analyze
Symbol: ATF4P4
Name: activating transcription factor 4 pseudogene 4
RGD ID: 1344419
HGNC Page HGNC:787
Description: INTERACTS WITH aristolochic acid A; N-methyl-4-phenylpyridinium
Type: pseudo (Ensembl: transcribed_processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATF4B
Related Functional Gene: ATF4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811113,790,038 - 113,791,453 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11113,790,318 - 113,791,366 (+)EnsemblGRCh38hg38GRCh38
GRCh3711113,660,760 - 113,662,175 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,165,967 - 113,167,719 (+)NCBINCBI36Build 36hg18NCBI36
Celera11110,813,721 - 110,815,056 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11109,589,290 - 109,590,705 (+)NCBIHuRef
CHM1_111113,544,055 - 113,545,470 (+)NCBICHM1_1
T2T-CHM13v2.011113,800,377 - 113,801,792 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:10610718  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:323
Count of miRNA genes:291
Interacting mature miRNAs:300
Transcripts:ENST00000393544, ENST00000438498
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 4
Low 709 698 225 33 234 7 1270 586 695 17 486 351 26 365 967
Below cutoff 1636 2180 1369 482 1474 351 3003 1571 2860 290 889 1156 140 835 1808 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000393544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,789,231 - 113,791,160 (+)Ensembl
RefSeq Acc Id: ENST00000438498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11113,790,318 - 113,791,366 (+)Ensembl
RefSeq Acc Id: XR_039613
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 3611113,165,967 - 113,167,719 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC ATF4P4 COSMIC
Ensembl Genes ENSG00000256167 Ensembl
GTEx ENSG00000256167 GTEx
HGNC ID HGNC:787 ENTREZGENE
Human Proteome Map ATF4P4 Human Proteome Map
NCBI Gene 100127952 ENTREZGENE
PharmGKB PA25087 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 ATF4P4  activating transcription factor 4 pseudogene 4  ATF4B  activating transcription factor 4B  Symbol and/or name change 5135510 APPROVED