IGF2-AS (IGF2 antisense RNA) - Rat Genome Database

Name: IGF2-AS
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: IGF2-AS (IGF2 antisense RNA) Homo sapiens

Analyze

Symbol:

IGF2-AS

Name:

IGF2 antisense RNA

RGD ID:

1344250

HGNC Page

HGNC:14062

Description:

Predicted to be located in cytoplasm.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

REVIEWED

Previously known as:

IGF2-AS1; IGF2AS; MGC168198; PEG8

RGD Orthologs

Mouse

Alliance Genes

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	2,140,512 - 2,148,666 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	2,140,501 - 2,148,666 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	2,161,742 - 2,169,896 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	2,118,313 - 2,126,470 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	2,118,322 - 2,126,470	NCBI
Celera	11	2,198,265 - 2,206,401 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	1,952,022 - 1,960,158 (+)	NCBI		HuRef
CHM1_1	11	2,160,711 - 2,168,849 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	2,228,165 - 2,236,316 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

delta beta-thalassemia (IAGP)

developmental and epileptic encephalopathy (IAGP)

early infantile epileptic encephalopathy (IAGP)

genetic disease (IAGP)

immunodeficiency 39 (IAGP)

neuronal ceroid lipofuscinosis (IAGP)

Segawa Syndrome, Autosomal Recessive (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

4,4'-sulfonyldiphenol (ISO)

Aflatoxin B2 alpha (EXP)

arsenite(3-) (EXP)

benzo[a]pyrene (EXP)

benzo[e]pyrene (EXP)

bisphenol A (ISO)

butanal (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

copper atom (EXP)

copper(0) (EXP)

copper(II) sulfate (EXP)

disulfiram (EXP)

folic acid (EXP)

leflunomide (EXP)

methapyrilene (EXP)

mono(2-ethyl-5-hydroxyhexyl) phthalate (EXP)

mono(2-ethyl-5-oxohexyl) phthalate (EXP)

mono(2-ethylhexyl) phthalate (EXP)

resveratrol (EXP)

triclosan (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoplasm (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10731720	PMID:11181995	PMID:12477932	PMID:12603530	PMID:12702581	PMID:17289909	PMID:17554260	PMID:17632545	PMID:18676680	PMID:19170196	PMID:19625176	PMID:19692168
PMID:19767753	PMID:19913121	PMID:19948975	PMID:20564319	PMID:20628086	PMID:20819778	PMID:21829393	PMID:23193016	PMID:24824313	PMID:31183590	PMID:31317640	PMID:31850718
PMID:32513696	PMID:33175607	PMID:34101307	PMID:34109707	PMID:34474977	PMID:34516353	PMID:36508036

Genomics

Comparative Map Data

IGF2-AS
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	2,140,512 - 2,148,666 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	2,140,501 - 2,148,666 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	2,161,742 - 2,169,896 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	2,118,313 - 2,126,470 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	2,118,322 - 2,126,470	NCBI
Celera	11	2,198,265 - 2,206,401 (+)	NCBI		Celera
Cytogenetic Map	11	p15.5	NCBI
HuRef	11	1,952,022 - 1,960,158 (+)	NCBI		HuRef
CHM1_1	11	2,160,711 - 2,168,849 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	2,228,165 - 2,236,316 (+)	NCBI		T2T-CHM13v2.0

Igf2os
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	142,213,417 - 142,224,093 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	142,213,430 - 142,224,093 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	142,659,680 - 142,670,356 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	142,659,693 - 142,670,356 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	149,845,598 - 149,856,261 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	142,469,083 - 142,479,746 (+)	NCBI		MGSCv36	mm8
Celera	7	142,416,023 - 142,426,685 (+)	NCBI		Celera
Cytogenetic Map	7	F5	NCBI
cM Map	7	87.99	NCBI

Variants

Variants in IGF2-AS
16 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 11p15.5-15.4(chr11:196966-3377077)x3	copy number gain	See cases [RCV000050947]	Chr11:196966..3377077 [GRCh38] Chr11:196966..3398307 [GRCh37] Chr11:186966..3354883 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:196966-4435344)x3	copy number gain	See cases [RCV000050927]	Chr11:196966..4435344 [GRCh38] Chr11:196966..4456574 [GRCh37] Chr11:186966..4413150 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:218365-3377077)x3	copy number gain	See cases [RCV000053614]	Chr11:218365..3377077 [GRCh38] Chr11:218365..3398307 [GRCh37] Chr11:208365..3354883 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:196966-3624139)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053592]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053592]\|See cases [RCV000053592]	Chr11:196966..3624139 [GRCh38] Chr11:196966..3645369 [GRCh37] Chr11:186966..3601945 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-13(chr11:202758-31726224)x3	copy number gain	See cases [RCV000053613]	Chr11:202758..31726224 [GRCh38] Chr11:202758..31747772 [GRCh37] Chr11:192758..31704348 [NCBI36] Chr11:11p15.5-13	pathogenic
NM_001042376.2(INS-IGF2):c.*488G>A	single nucleotide variant	Malignant melanoma [RCV000069292]	Chr11:2146304 [GRCh38] Chr11:2167534 [GRCh37] Chr11:2124110 [NCBI36] Chr11:11p15.5	not provided
GRCh38/hg38 11p15.5-15.1(chr11:446754-18904742)x3	copy number gain	See cases [RCV000133997]	Chr11:446754..18904742 [GRCh38] Chr11:446754..18926289 [GRCh37] Chr11:436754..18882865 [NCBI36] Chr11:11p15.5-15.1	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:1975511-2888695)x3	copy number gain	See cases [RCV000136112]	Chr11:1975511..2888695 [GRCh38] Chr11:1996741..2909925 [GRCh37] Chr11:1953317..2866501 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:1537379-3360769)x3	copy number gain	See cases [RCV000136847]	Chr11:1537379..3360769 [GRCh38] Chr11:1558609..3381999 [GRCh37] Chr11:1515185..3338575 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:1975511-3624139)x1	copy number loss	See cases [RCV000137066]	Chr11:1975511..3624139 [GRCh38] Chr11:1996741..3645369 [GRCh37] Chr11:1953317..3601945 [NCBI36] Chr11:11p15.5-15.4	uncertain significance
GRCh38/hg38 11p15.5-15.4(chr11:61793-10727969)x3	copy number gain	See cases [RCV000139987]	Chr11:61793..10727969 [GRCh38] Chr11:61793..10749516 [GRCh37] Chr11:51793..10706092 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5(chr11:2127344-2159430)x3	copy number gain	See cases [RCV000141243]	Chr11:2127344..2159430 [GRCh38] Chr11:2148574..2180660 [GRCh37] Chr11:2105150..2137236 [NCBI36] Chr11:11p15.5	uncertain significance
GRCh38/hg38 11p15.5-15.4(chr11:1132899-3213923)x1	copy number loss	See cases [RCV000142464]	Chr11:1132899..3213923 [GRCh38] Chr11:1126807..3235153 [GRCh37] Chr11:1116807..3191729 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5-15.4(chr11:196855-5321874)x3	copy number gain	See cases [RCV000142890]	Chr11:196855..5321874 [GRCh38] Chr11:196855..5343104 [GRCh37] Chr11:186855..5299680 [NCBI36] Chr11:11p15.5-15.4	pathogenic
GRCh38/hg38 11p15.5(chr11:2106943-2565669)x3	copy number gain	See cases [RCV000143587]	Chr11:2106943..2565669 [GRCh38] Chr11:2128173..2586899 [GRCh37] Chr11:2084749..2543475 [NCBI36] Chr11:11p15.5	uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:193187-5291338)x3	copy number gain	See cases [RCV000446036]	Chr11:193187..5291338 [GRCh37] Chr11:11p15.5-15.4	pathogenic
GRCh37/hg19 11p15.5-15.3(chr11:193146-12643136)	copy number gain	Silver-Russell syndrome 1 [RCV000767567]	Chr11:193146..12643136 [GRCh37] Chr11:11p15.5-15.3	pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:230615-6644927)x3	copy number gain	See cases [RCV000449417]	Chr11:230615..6644927 [GRCh37] Chr11:11p15.5-15.4	pathogenic
GRCh37/hg19 11p15.5-12(chr11:230615-37698540)x3	copy number gain	See cases [RCV000511561]	Chr11:230615..37698540 [GRCh37] Chr11:11p15.5-12	pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)	copy number gain	See cases [RCV000511729]	Chr11:230616..134938470 [GRCh37] Chr11:11p15.5-q25	pathogenic
GRCh37/hg19 11p15.5-q25(chr11:230616-134938470)x3	copy number gain	See cases [RCV000510881]	Chr11:230616..134938470 [GRCh37] Chr11:11p15.5-q25	pathogenic
GRCh37/hg19 11p15.5-14.3(chr11:230615-25584362)x3	copy number gain	See cases [RCV000512225]	Chr11:230615..25584362 [GRCh37] Chr11:11p15.5-14.3	pathogenic
GRCh37/hg19 11p15.5-13(chr11:230615-31995219)x3	copy number gain	See cases [RCV000512477]	Chr11:230615..31995219 [GRCh37] Chr11:11p15.5-13	pathogenic
GRCh37/hg19 11p15.5(chr11:1690968-2277648)x3	copy number gain	See cases [RCV000512345]	Chr11:1690968..2277648 [GRCh37] Chr11:11p15.5	uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:230615-9704511)x3	copy number gain	not provided [RCV000683369]	Chr11:230615..9704511 [GRCh37] Chr11:11p15.5-15.4	pathogenic
GRCh37/hg19 11p15.5-15.1(chr11:230615-17099213)x3	copy number gain	not provided [RCV000683372]	Chr11:230615..17099213 [GRCh37] Chr11:11p15.5-15.1	pathogenic
NM_001042376.3(INS-IGF2):c.581G>A (p.Arg194Gln)	single nucleotide variant	Inborn genetic diseases [RCV003183429]	Chr11:2147634 [GRCh38] Chr11:2168864 [GRCh37] Chr11:11p15.5	uncertain significance
GRCh37/hg19 11p15.5-q25(chr11:198510-134934063)x3	copy number gain	not provided [RCV000737348]	Chr11:198510..134934063 [GRCh37] Chr11:11p15.5-q25	pathogenic
GRCh37/hg19 11p15.5-q25(chr11:70864-134938470)x3	copy number gain	not provided [RCV000749874]	Chr11:70864..134938470 [GRCh37] Chr11:11p15.5-q25	pathogenic
NC_000011.9:g.(?_612625)_(2193840_?)dup	duplication	Immunodeficiency 39 [RCV001033372]	Chr11:612625..2193840 [GRCh37] Chr11:11p15.5	uncertain significance
NC_000011.9:g.(?_532616)_(2906985_?)dup	duplication	Neuronal ceroid lipofuscinosis [RCV001032557]	Chr11:532616..2906985 [GRCh37] Chr11:11p15.5-15.4	uncertain significance
GRCh37/hg19 11p15.5-13(chr11:235934-33826995)x3	copy number gain	not provided [RCV001006372]	Chr11:235934..33826995 [GRCh37] Chr11:11p15.5-13	pathogenic
GRCh37/hg19 11p15.5(chr11:1436158-2321134)x3	copy number gain	not provided [RCV001259591]	Chr11:1436158..2321134 [GRCh37] Chr11:11p15.5	pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:230615-4851537)x3	copy number gain	See cases [RCV001263059]	Chr11:230615..4851537 [GRCh37] Chr11:11p15.5-15.4	pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:210300-8664358)x3	copy number gain	Silver-Russell syndrome 1 [RCV001263222]	Chr11:210300..8664358 [GRCh37] Chr11:11p15.5-15.4	pathogenic
GRCh37/hg19 11p15.5(chr11:1621232-2228572)	copy number gain	Beckwith-Wiedemann syndrome [RCV002280763]	Chr11:1621232..2228572 [GRCh37] Chr11:11p15.5	pathogenic
NC_000011.9:g.(?_298501)_(4113028_?)dup	duplication	Early infantile epileptic encephalopathy with suppression bursts [RCV001316682]	Chr11:298501..4113028 [GRCh37] Chr11:11p15.5-15.4	uncertain significance
NC_000011.9:g.(?_612625)_(2193840_?)dup	duplication	Autosomal recessive DOPA responsive dystonia [RCV001301561]\|Immunodeficiency 39 [RCV001033372]	Chr11:612625..2193840 [GRCh37] Chr11:11p15.5	uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:10701-5080415)x2	copy number gain	See cases [RCV001310286]	Chr11:10701..5080415 [GRCh37] Chr11:11p15.5-15.4	pathogenic
NM_001007139.6(IGF2):c.-248-73=	single nucleotide variant	INSULIN-LIKE GROWTH FACTOR II POLYMORPHISM [RCV000015870]	Chr11:2147880 [GRCh38] Chr11:2169110 [GRCh37] Chr11:11p15.5	benign
GRCh37/hg19 11p15.5-15.4(chr11:230615-5525355)x3	copy number gain	not provided [RCV001825269]	Chr11:230615..5525355 [GRCh37] Chr11:11p15.5-15.4	not provided
GRCh37/hg19 11p15.5(chr11:1719815-2321109)x3	copy number gain	not provided [RCV001827983]	Chr11:1719815..2321109 [GRCh37] Chr11:11p15.5	likely pathogenic
NC_000011.9:g.(?_1278740)_(2906719_?)dup	duplication	Autosomal recessive DOPA responsive dystonia [RCV003113999]	Chr11:1278740..2906719 [GRCh37] Chr11:11p15.5-15.4	uncertain significance
NC_000011.9:g.(?_721044)_(3988932_?)dup	duplication	not provided [RCV003113442]	Chr11:721044..3988932 [GRCh37] Chr11:11p15.5-15.4	uncertain significance
GRCh37/hg19 11p15.5-14.2(chr11:230615-26881146)x3	copy number gain	See cases [RCV002286351]	Chr11:230615..26881146 [GRCh37] Chr11:11p15.5-14.2	pathogenic
NC_000011.10:g.(499700_4999400)_(5279346_5279697)del	deletion	Thalassemia, gamma-delta-beta [RCV000015529]	Chr11:4999400..5279346 [GRCh38] Chr11:11p15.5-15.4	pathogenic
NM_001042376.3(INS-IGF2):c.584C>G (p.Pro195Arg)	single nucleotide variant	Inborn genetic diseases [RCV002902078]	Chr11:2147631 [GRCh38] Chr11:2168861 [GRCh37] Chr11:11p15.5	uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:230616-8250724)x3	copy number gain	not provided [RCV002472435]	Chr11:230616..8250724 [GRCh37] Chr11:11p15.5-15.4	pathogenic
NM_001042376.3(INS-IGF2):c.460C>G (p.Gln154Glu)	single nucleotide variant	Inborn genetic diseases [RCV002733781]	Chr11:2147755 [GRCh38] Chr11:2168985 [GRCh37] Chr11:11p15.5	uncertain significance
NM_001042376.3(INS-IGF2):c.410G>A (p.Gly137Asp)	single nucleotide variant	Inborn genetic diseases [RCV002919305]	Chr11:2147805 [GRCh38] Chr11:2169035 [GRCh37] Chr11:11p15.5	uncertain significance
NM_001042376.3(INS-IGF2):c.427G>A (p.Glu143Lys)	single nucleotide variant	Inborn genetic diseases [RCV003345216]	Chr11:2147788 [GRCh38] Chr11:2169018 [GRCh37] Chr11:11p15.5	uncertain significance
GRCh37/hg19 11p15.5-15.4(chr11:192764-3362853)x3	copy number gain	not provided [RCV003484828]	Chr11:192764..3362853 [GRCh37] Chr11:11p15.5-15.4	pathogenic
GRCh37/hg19 11p15.5-15.4(chr11:230615-8821443)x3	copy number gain	Russell-Silver syndrome [RCV003444025]	Chr11:230615..8821443 [GRCh37] Chr11:11p15.5-15.4	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	737
Count of miRNA genes:	384
Interacting mature miRNAs:	413
Transcripts:	ENST00000381361, ENST00000381363, ENST00000445504
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

IGF2

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,169,615 - 2,170,122	UniSTS	GRCh37
GRCh37	11	2,152,567 - 2,153,356	UniSTS	GRCh37
Build 36	11	2,126,191 - 2,126,698	RGD	NCBI36
Celera	11	2,189,058 - 2,189,862	UniSTS
Celera	11	2,206,120 - 2,206,627	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,959,877 - 1,960,384	UniSTS
HuRef	11	1,943,089 - 1,943,889	UniSTS
GeneMap99-GB4 RH Map	11	16.42	UniSTS
NCBI RH Map	11	10.0	UniSTS

ECD02194

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,169,406 - 2,170,244	UniSTS	GRCh37
Build 36	11	2,125,982 - 2,126,820	RGD	NCBI36
Celera	11	2,205,911 - 2,206,749	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,959,668 - 1,960,506	UniSTS

ECD02763

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,166,711 - 2,167,529	UniSTS	GRCh37
Build 36	11	2,123,287 - 2,124,105	RGD	NCBI36
Celera	11	2,203,216 - 2,204,034	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,956,973 - 1,957,791	UniSTS

ECD02954

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,163,166 - 2,163,977	UniSTS	GRCh37
Build 36	11	2,119,742 - 2,120,553	RGD	NCBI36
Celera	11	2,199,673 - 2,200,484	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,953,430 - 1,954,241	UniSTS

ECD03070

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,164,000 - 2,164,807	UniSTS	GRCh37
Build 36	11	2,120,576 - 2,121,383	RGD	NCBI36
Celera	11	2,200,507 - 2,201,314	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,954,264 - 1,955,071	UniSTS

ECD03071

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,165,812 - 2,166,619	UniSTS	GRCh37
Build 36	11	2,122,388 - 2,123,195	RGD	NCBI36
Celera	11	2,202,317 - 2,203,124	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,956,074 - 1,956,881	UniSTS

ECD03179

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,164,942 - 2,165,745	UniSTS	GRCh37
Build 36	11	2,121,518 - 2,122,321	RGD	NCBI36
Celera	11	2,201,449 - 2,202,250	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,955,206 - 1,956,007	UniSTS

ECD04781

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,167,680 - 2,168,434	UniSTS	GRCh37
Build 36	11	2,124,256 - 2,125,010	RGD	NCBI36
Celera	11	2,204,185 - 2,204,939	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,957,942 - 1,958,696	UniSTS

ECD06903

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,160,901 - 2,161,597	UniSTS	GRCh37
Build 36	11	2,117,477 - 2,118,173	RGD	NCBI36
Celera	11	2,197,408 - 2,198,104	RGD
Cytogenetic Map	11	p15.5	UniSTS

ECD07090

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,168,620 - 2,169,311	UniSTS	GRCh37
Build 36	11	2,125,196 - 2,125,887	RGD	NCBI36
Celera	11	2,205,125 - 2,205,816	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,958,882 - 1,959,573	UniSTS

ECD07757

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,162,353 - 2,163,026	UniSTS	GRCh37
Build 36	11	2,118,929 - 2,119,602	RGD	NCBI36
Celera	11	2,198,860 - 2,199,533	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,952,617 - 1,953,290	UniSTS

ECD11676

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,161,623 - 2,162,188	UniSTS	GRCh37
Build 36	11	2,118,199 - 2,118,764	RGD	NCBI36
Celera	11	2,198,130 - 2,198,695	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,951,887 - 1,952,452	UniSTS

REN117041

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,167,670 - 2,167,920	UniSTS	GRCh37
Build 36	11	2,124,246 - 2,124,496	RGD	NCBI36
Celera	11	2,204,175 - 2,204,425	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,957,932 - 1,958,182	UniSTS

REN117042

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,167,899 - 2,168,156	UniSTS	GRCh37
Build 36	11	2,124,475 - 2,124,732	RGD	NCBI36
Celera	11	2,204,404 - 2,204,661	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,958,161 - 1,958,418	UniSTS

REN117043

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,168,186 - 2,168,445	UniSTS	GRCh37
Build 36	11	2,124,762 - 2,125,021	RGD	NCBI36
Celera	11	2,204,691 - 2,204,950	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,958,448 - 1,958,707	UniSTS

REN117044

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,168,422 - 2,168,674	UniSTS	GRCh37
Build 36	11	2,124,998 - 2,125,250	RGD	NCBI36
Celera	11	2,204,927 - 2,205,179	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,958,684 - 1,958,936	UniSTS

REN117045

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,168,657 - 2,168,908	UniSTS	GRCh37
Build 36	11	2,125,233 - 2,125,484	RGD	NCBI36
Celera	11	2,205,162 - 2,205,413	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,958,919 - 1,959,170	UniSTS

REN117046

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,168,891 - 2,169,117	UniSTS	GRCh37
Build 36	11	2,125,467 - 2,125,693	RGD	NCBI36
Celera	11	2,205,396 - 2,205,622	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,959,153 - 1,959,379	UniSTS

REN117047

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,169,099 - 2,169,336	UniSTS	GRCh37
Build 36	11	2,125,675 - 2,125,912	RGD	NCBI36
Celera	11	2,205,604 - 2,205,841	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,959,361 - 1,959,598	UniSTS

REN117048

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,169,316 - 2,169,541	UniSTS	GRCh37
Build 36	11	2,125,892 - 2,126,117	RGD	NCBI36
Celera	11	2,205,821 - 2,206,046	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,959,578 - 1,959,803	UniSTS

REN117049

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	11	2,169,525 - 2,169,783	UniSTS	GRCh37
Build 36	11	2,126,101 - 2,126,359	RGD	NCBI36
Celera	11	2,206,030 - 2,206,288	RGD
Cytogenetic Map	11	p15.5	UniSTS
HuRef	11	1,959,787 - 1,960,045	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

Low

227

208

654

314

308

1297

168

866

758

111

873

822

Below cutoff

1911

2103

896

216

561

2622

1936

2500

134

474

1111

152

331

1861

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NG_008849	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NG_050578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_028043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_133657	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB030733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC132217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL521915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL530868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL545164	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY149295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY149296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY375532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC142691	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000381361

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	11	2,140,517 - 2,148,666 (+)	Ensembl

RefSeq Acc Id:

ENST00000381363

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	11	2,140,644 - 2,147,807 (+)	Ensembl

RefSeq Acc Id:

ENST00000445504

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	11	2,140,501 - 2,148,339 (+)	Ensembl

RefSeq Acc Id:

NR_028043

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	11	2,140,512 - 2,148,666 (+)	NCBI
GRCh37	11	2,161,758 - 2,169,896 (+)	RGD
Celera	11	2,198,265 - 2,206,401 (+)	RGD
HuRef	11	1,952,022 - 1,960,158 (+)	ENTREZGENE
CHM1_1	11	2,160,695 - 2,168,849 (+)	NCBI
T2T-CHM13v2.0	11	2,228,165 - 2,236,316 (+)	NCBI

Sequence:

show sequence

TCCTAGGCCCGCGGGCTAGAGGCACTTTACCGCCCGGCGGGAGCGCCTCTCCTCCGCGTCCCTC
GCCCCAGCCCCCTGCCCGCCCCACTTTGGGACCCTCCAGCCGCTTTCCCCACAAATGAGATCTT
TGCAATGAGCAAACGAAAGTGGCGCGGATTTCGGGGCGCCCAGCAGGAGCGAGCGCAGCCGCCA
GCCGCAAGTCCGCAGCCGTGTCCCGCGCCCCACGCCGGCCTCCCCGGCGGCAGCCGGAGACGAG
CGCCAGCACCGGCGGGACAGCAGCAGATGCGGGCCGAGAGCCGGTCAGGGGCGCAGAGGCGGAG
GGGATCGGCGCGGCGGGGAGCTCACCGCGAAGCTGGAGGCTGCGTCCGCGGGCGCACCAGGAGC
TCAGGCAGCGAGCGATCGAACGCTCTGTGGCAGGCGGTGGACGCTGCTGAAGCTCTGGCTCTGA
GCTCACCGCTCCGCCGTCCGTGGGACCAAGCCCAGCATTTTACAAACCCAGCTCCTTTCTCCAA
GGGTCCTCAGAGCGCCCCTCCGTCACCCCCTGCAGGGCGCCGCAGACGAGGCGCTGACCTTGCG
CTCACTCCCCTCGCTGGGGAAGGACACACTCGCTGGCGTCAGCCCGGCCGGCCTGGGAAGTAGG
ACTAAGGACCCGAACTGCAACCCTCCACACCAGACAGCACAGACCACCCCAAGGCTGCTCAATC
TGCCCAAAGCCAAAAGAGCTCCCCTGCCAGGACCTCGGTGCCGTGGAGACTGCGGGGAACCTGC
TCTGCCCACACCTGCTCTGGCCCCTAGACGGAAGCACCTGGAGCCAACCACGGAACTCCAGATC
CCAGCTGTGTGACTGAATCCACGCCAGCCTCTCTGAGCCAAAGCTGCTTGCAGAAGGGGGAGAT
CCCAGTTCGAAGACTCCCGCGCAGAGCCTGTGGCCCTCTCTGCCAGGCCTCAGGGTGCCTGAGA
CACTCACCTCTCTGCCTCGCAGTTGGGGCTGAGGCTGGGGCTGGCTGCCAGCCTCAGTTCTGGG
AGCGCTGGGGTCGCCTGGGCCACAGGCCACAGCAGCTCACCTCAGGACTGGGCTCTCTGGCCTG
CTGGGGCTCAGGCTGTGGGGCAGGCTGGGCAGGGGGCTGAGCTGGCAGCGATTCAGAGCCCTGG
GGCTGGGGGCTGGAATCCACCTCCTCCCACACAAGCTCGGTGGTGACTCTTCGGCCCCTGGGGA
AAAACAAAAAGATATTGCTGAGATGACCTCTTTTAAAAGCAAAGCCCCCCTCCCCATACACCCC
AAGCCTGAGCCCTGTCCCATCCCCCTCCCCGGGTTCCTTCAGGTCACCTTGTCAGGATCTGGGC
AGCGGCTTCCCCCTCTAGCCCCTCCCCTGCCTAGAGCTCCCTCTTTCAAAGTATAAGGGAGGGA
AGAAGTGGTGAGAAGTTTGCCTAGAAAGGGCTTCCCGGTGCTGATGGAGAGGCCGAGACCCTTC
TGTTGGACAGGCTGCCCTGTTCCTGGGTGAGGATGGGCTTCTGCCTGGCACTGGGGGTGGAGGG
TGCACACGAATGGCCCGCCTTGAGGGGTCATGGCACGGAATATGAAAGCCTCCTCCACCTCCAA
ACACCCCCACCTTGGAAGGAGATAAGGAGGGGGCCCCAGCAAAAGCCACTGGACACACAGCTCT
GCTTGACGAGGCCAGTGAGGGACGGCGTGGCTGTGCTTCCTGGGGAAATGAACCCCCTCCCCAC
AGACACCACCCTGGGTGGATCGAGGAGTCTGGGTCCAGGGTGCAACAGAGAAAAACTTCATGCA
TGAATGAGCATTCCCAGGGAAACTGCCTTGGCCCCAGGGCGCCTCTCTGTGCCAGGGAGGCTGG
GAGAGCAGCAAGGGGGACCAGGTGCGCCATCAGGAGGAGAGAAGCTAAACCTAGGGGGGACATG
GAGGGCGGTTGTTGCCTCTCCCGGCATTTCTCCTCAGTCTCCTGTCCAATTTCTTGCTGGTGGT
CAGGAGGCATAGGGAGGCAGGAGGGAAGGAAGCTTTACCTGTAAAATGGTGTATATATGTATAA
ATAAAATCTCTGCGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_133657

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	11	2,140,512 - 2,148,666 (+)	NCBI
CHM1_1	11	2,160,695 - 2,168,849 (+)	NCBI
T2T-CHM13v2.0	11	2,228,165 - 2,236,316 (+)	NCBI

Sequence:

show sequence

TCCTAGGCCCGCGGGCTAGAGGCACTTTACCGCCCGGCGGGAGCGCCTCTCCTCCGCGTCCCTC
GCCCCAGCCCCCTGCCCGCCCCACTTTGGGACCCTCCAGCCGCTTTCCCCACAAATGAGATCTT
TGCAATGAGCAAACGAAAGTGGCGCGGATTTCGGGGCGCCCAGCAGGAGCGAGCGCAGCCGCCA
GCCGCAAGTCCGCAGCCGTGTCCCGCGCCCCACGCCGGCCTCCCCGGCGGCAGCCGGAGACGAG
CGCCAGCACCGGCGGGACAGCAGCAGATGCGGGCCGAGAGCCGGTCAGGGGCGCAGAGGCGGAG
GGGATCGGCGCGGCGGGGAGCTCACCGCGAAGCTGGAGGCTGCGTCCGCGGGCGCACCAGGAGC
TCAGGCAGCGAGCGATCGAACGCTCTGTGGCAGGCGGTGGACGCTGCTGAAGGGCGCCGCAGAC
GAGGCGCTGACCTTGCGCTCACTCCCCTCGCTGGGGAAGGACACACTCGCTGGCGTCAGCCCGG
CCGGCCTGGGAAGTAGGACTAAGGACCCGAACTGCAACCCTCCACACCAGACAGCACAGACCAC
CCCAAGGCTGCTCAATCTGCCCAAAGCCAAAAGAGCTCCCCTGCCAGGACCTCGGTGCCGTGGA
GACTGCGGGGAACCTGCTCTGCCCACACCTGCTCTGGCCCCTAGACGGAAGCACCTGGAGCCAA
CCACGGAACTCCAGATCCCAGCTGTGTGACTGAATCCACGCCAGCCTCTCTGAGCCAAAGCTGC
TTGCAGAAGGGGGAGATCCCAGTTCGAAGACTCCCGCGCAGAGCCTGTGGCCCTCTCTGCCAGG
CCTCAGGGTGCCTGAGACACTCACCTCTCTGCCTCGCAGTTGGGGCTGAGGCTGGGGCTGGCTG
CCAGCCTCAGTTCTGGGAGCGCTGGGGTCGCCTGGGCCACAGGCCACAGCAGCTCACCTCAGGA
CTGGGCTCTCTGGCCTGCTGGGGCTCAGGCTGTGGGGCAGGCTGGGCAGGGGGCTGAGCTGGCA
GCGATTCAGAGCCCTGGGGCTGGGGGCTGGAATCCACCTCCTCCCACACAAGCTCGGTGGTGAC
TCTTCGGCCCCTGGGGAAAAACAAAAAGATATTGCTGAGATGACCTCTTTTAAAAGCAAAGCCC
CCCTCCCCATACACCCCAAGCCTGAGCCCTGTCCCATCCCCCTCCCCGGGTTCCTTCAGGTCAC
CTTGTCAGGATCTGGGCAGCGGCTTCCCCCTCTAGCCCCTCCCCTGCCTAGAGCTCCCTCTTTC
AAAGTATAAGGGAGGGAAGAAGTGGTGAGAAGTTTGCCTAGAAAGGGCTTCCCGGTGCTGATGG
AGAGGCCGAGACCCTTCTGTTGGACAGGCTGCCCTGTTCCTGGGTGAGGATGGGCTTCTGCCTG
GCACTGGGGGTGGAGGGTGCACACGAATGGCCCGCCTTGAGGGGTCATGGCACGGAATATGAAA
GCCTCCTCCACCTCCAAACACCCCCACCTTGGAAGGAGATAAGGAGGGGGCCCCAGCAAAAGCC
ACTGGACACACAGCTCTGCTTGACGAGGCCAGTGAGGGACGGCGTGGCTGTGCTTCCTGGGGAA
ATGAACCCCCTCCCCACAGACACCACCCTGGGTGGATCGAGGAGTCTGGGTCCAGGGTGCAACA
GAGAAAAACTTCATGCATGAATGAGCATTCCCAGGGAAACTGCCTTGGCCCCAGGGCGCCTCTC
TGTGCCAGGGAGGCTGGGAGAGCAGCAAGGGGGACCAGGTGCGCCATCAGGAGGAGAGAAGCTA
AACCTAGGGGGGACATGGAGGGCGGTTGTTGCCTCTCCCGGCATTTCTCCTCAGTCTCCTGTCC
AATTTCTTGCTGGTGGTCAGGAGGCATAGGGAGGCAGGAGGGAAGGAAGCTTTACCTGTAAAAT
GGTGTATATATGTATAAATAAAATCTCTGCGCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

hide sequence

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6U949-F1-model_v2	AlphaFold	Q6U949	1-168	view protein structure

Promoters

RGD ID:

15096502

Promoter ID:

EPDNEWNC_H1327

Type:

initiation region

Name:

IGF2-AS_1

Description:

IGF2 antisense RNA [Source:HGNC Symbol;Acc:HGNC:14062]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	11	2,140,494 - 2,140,554	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:14062	AgrOrtholog
COSMIC	IGF2-AS	COSMIC
Ensembl Genes	ENSG00000099869	Ensembl, ENTREZGENE
Ensembl Transcript	ENST00000381361	ENTREZGENE
	ENST00000445504	ENTREZGENE
GTEx	ENSG00000099869	GTEx
HGNC ID	HGNC:14062	ENTREZGENE
Human Proteome Map	IGF2-AS	Human Proteome Map
NCBI Gene	51214	ENTREZGENE
OMIM	610146	OMIM
PharmGKB	PA29700	PharmGKB
RNAcentral	URS0000A76E5D	RNACentral
	URS0000A7761B	RNACentral
UniProt	IG2AS_HUMAN	UniProtKB/Swiss-Prot
UniProt Secondary	A5PKV8	UniProtKB/Swiss-Prot
	A6NNQ2	UniProtKB/Swiss-Prot
	Q7Z712	UniProtKB/Swiss-Prot
	Q9P2W0	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-08-21	IGF2-AS	IGF2 antisense RNA	IGF2-AS	IGF2 antisense RNA (non-protein coding)	Symbol and/or name change	5135510	APPROVED
2012-04-24	IGF2-AS	IGF2 antisense RNA (non-protein coding)	IGF2-AS1	IGF2 antisense RNA 1 (non-protein coding)	Symbol and/or name change	5135510	APPROVED
2012-01-31	IGF2-AS1	IGF2 antisense RNA 1 (non-protein coding)	IGF2-AS	insulin-like growth factor 2 antisense (non-protein coding)	Symbol and/or name change	5135510	APPROVED
2011-09-27	IGF2-AS	insulin-like growth factor 2 antisense (non-protein coding)	IGF2AS	insulin-like growth factor 2 antisense (non-protein coding)	Symbol and/or name change	5135510	APPROVED
2011-09-13	IGF2AS	insulin-like growth factor 2 antisense (non-protein coding)	IGF2AS	insulin-like growth factor 2 antisense	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar