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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Monoclonal B-Cell Lymphocytosis | | IAGP | RGD:11040208 | 8554872 | ClinVar Annotator: match by term: Monoclonal B-Cell Lymphocytosis | ClinVar | | |
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Imported Disease Annotations - ClinVarTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Monoclonal B-Cell Lymphocytosis | | IAGP | RGD:11040208 | 8554872 | ClinVar Annotator: match by term: Monoclonal B-Cell Lymphocytosis | ClinVar | | |
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# | Reference Title | Reference Citation |
1. | GOAs Human GO annotations | GOA_HUMAN data from the GO Consortium |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. | Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363. |
PMID:12477932 | PMID:12759756 | PMID:12975309 | PMID:14702039 | PMID:16344560 | PMID:17207965 | PMID:19164095 | PMID:21186191 | PMID:21873635 | PMID:25210595 | PMID:26186194 | PMID:28514442 |
PMID:30021884 | PMID:30641943 | PMID:31741433 | PMID:31862882 | PMID:32296183 | PMID:32393512 | PMID:33961781 | PMID:35271311 |
SLC35A5 (Homo sapiens - human) |
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Slc35a5 (Mus musculus - house mouse) |
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Slc35a5 (Rattus norvegicus - Norway rat) |
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Slc35a5 (Chinchilla lanigera - long-tailed chinchilla) |
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SLC35A5 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SLC35A5 (Canis lupus familiaris - dog) |
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Slc35a5 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SLC35A5 (Sus scrofa - pig) |
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SLC35A5 (Chlorocebus sabaeus - green monkey) |
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Slc35a5 (Heterocephalus glaber - naked mole-rat) |
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SLC35A5_8059 |
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The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 1135 | 1353 | 1222 | 217 | 1115 | 130 | 2115 | 483 | 2686 | 291 | 1294 | 1382 | 100 | 844 | 1281 | 4 | ||
Low | 1304 | 1620 | 504 | 407 | 819 | 335 | 2242 | 1713 | 1048 | 128 | 166 | 231 | 74 | 1 | 360 | 1507 | 2 | 2 |
Below cutoff | 18 | 17 | 1 |
RefSeq Acc Id: | ENST00000261034 ⟹ ENSP00000261034 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000460615 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000460713 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000468642 ⟹ ENSP00000418265 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000484995 ⟹ ENSP00000419958 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000492406 ⟹ ENSP00000417654 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000494706 ⟹ ENSP00000420398 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001348905 ⟹ NP_001335834 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001348906 ⟹ NP_001335835 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001348907 ⟹ NP_001335836 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001348908 ⟹ NP_001335837 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001348909 ⟹ NP_001335838 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001348910 ⟹ NP_001335839 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001348911 ⟹ NP_001335840 | ||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_017945 ⟹ NP_060415 | ||||||||||||||||||||||||||||||||
RefSeq Status: | REVIEWED | ||||||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NP_060415 ⟸ NM_017945 |
- Peptide Label: | isoform 1 |
- UniProtKB: | Q9BS91 (UniProtKB/Swiss-Prot) |
- Sequence: |
RefSeq Acc Id: | NP_001335835 ⟸ NM_001348906 |
- Peptide Label: | isoform 1 |
- Sequence: |
RefSeq Acc Id: | NP_001335834 ⟸ NM_001348905 |
- Peptide Label: | isoform 1 |
- Sequence: |
RefSeq Acc Id: | NP_001335839 ⟸ NM_001348910 |
- Peptide Label: | isoform 4 |
- Sequence: |
RefSeq Acc Id: | NP_001335840 ⟸ NM_001348911 |
- Peptide Label: | isoform 5 |
- Sequence: |
RefSeq Acc Id: | NP_001335838 ⟸ NM_001348909 |
- Peptide Label: | isoform 3 |
- Sequence: |
RefSeq Acc Id: | NP_001335837 ⟸ NM_001348908 |
- Peptide Label: | isoform 2 |
- Sequence: |
RefSeq Acc Id: | NP_001335836 ⟸ NM_001348907 |
- Peptide Label: | isoform 1 |
- Sequence: |
RefSeq Acc Id: | ENSP00000417654 ⟸ ENST00000492406 |
RefSeq Acc Id: | ENSP00000418265 ⟸ ENST00000468642 |
RefSeq Acc Id: | ENSP00000420398 ⟸ ENST00000494706 |
RefSeq Acc Id: | ENSP00000419958 ⟸ ENST00000484995 |
RefSeq Acc Id: | ENSP00000261034 ⟸ ENST00000261034 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q9BS91-F1-model_v2 | AlphaFold | Q9BS91 | 1-424 | view protein structure |
RGD ID: | 6865244 | ||||||||
Promoter ID: | EPDNEW_H5787 | ||||||||
Type: | initiation region | ||||||||
Name: | SLC35A5_2 | ||||||||
Description: | solute carrier family 35 member A5 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H5789 | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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RGD ID: | 6865248 | ||||||||
Promoter ID: | EPDNEW_H5789 | ||||||||
Type: | initiation region | ||||||||
Name: | SLC35A5_1 | ||||||||
Description: | solute carrier family 35 member A5 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Alternative Promoters: | null; see alsoEPDNEW_H5787 | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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RGD ID: | 6800936 | ||||||||
Promoter ID: | HG_KWN:45836 | ||||||||
Type: | CpG-Island | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | MPROMDB | ||||||||
Tissues & Cell Lines: | CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4 | ||||||||
Transcripts: | ENST00000283290, ENST00000402314, NM_017945, UC010HQE.1 | ||||||||
Position: |
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Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 3q13.2-13.31(chr3:112168829-117393356)x1 | copy number loss | See cases [RCV000050766] | Chr3:112168829..117393356 [GRCh38] Chr3:111887676..117112203 [GRCh37] Chr3:113370366..118594893 [NCBI36] Chr3:3q13.2-13.31 |
pathogenic |
GRCh38/hg38 3q11.1-21.1(chr3:93886671-123216683)x1 | copy number loss | See cases [RCV000051543] | Chr3:93886671..123216683 [GRCh38] Chr3:93605515..122935530 [GRCh37] Chr3:95088205..124418220 [NCBI36] Chr3:3q11.1-21.1 |
pathogenic |
GRCh38/hg38 3q13.13-13.31(chr3:108242572-116169331)x1 | copy number loss | See cases [RCV000051544] | Chr3:108242572..116169331 [GRCh38] Chr3:107961419..115888178 [GRCh37] Chr3:109444109..117370868 [NCBI36] Chr3:3q13.13-13.31 |
pathogenic |
GRCh38/hg38 3q13.2-13.31(chr3:112479482-115774102)x1 | copy number loss | See cases [RCV000051545] | Chr3:112479482..115774102 [GRCh38] Chr3:112198329..115492949 [GRCh37] Chr3:113681019..116975639 [NCBI36] Chr3:3q13.2-13.31 |
pathogenic |
GRCh38/hg38 3q13.11-13.31(chr3:104621220-116093884)x3 | copy number gain | See cases [RCV000051722] | Chr3:104621220..116093884 [GRCh38] Chr3:104340064..115812731 [GRCh37] Chr3:105822754..117295421 [NCBI36] Chr3:3q13.11-13.31 |
pathogenic |
GRCh38/hg38 3q11.1-13.31(chr3:93819623-116887056)x1 | copy number loss | See cases [RCV000135320] | Chr3:93819623..116887056 [GRCh38] Chr3:93538467..116605903 [GRCh37] Chr3:95021157..118088593 [NCBI36] Chr3:3q11.1-13.31 |
pathogenic |
GRCh38/hg38 3q13.11-29(chr3:103426882-198110178)x3 | copy number gain | See cases [RCV000134948] | Chr3:103426882..198110178 [GRCh38] Chr3:103145726..197837049 [GRCh37] Chr3:104628416..199321446 [NCBI36] Chr3:3q13.11-29 |
pathogenic |
GRCh38/hg38 3q13.2-13.31(chr3:112465096-115774102)x1 | copy number loss | See cases [RCV000135592] | Chr3:112465096..115774102 [GRCh38] Chr3:112183943..115492949 [GRCh37] Chr3:113666633..116975639 [NCBI36] Chr3:3q13.2-13.31 |
likely pathogenic |
GRCh38/hg38 3q11.2-13.31(chr3:97795369-115663349)x1 | copy number loss | See cases [RCV000138186] | Chr3:97795369..115663349 [GRCh38] Chr3:97514213..115382196 [GRCh37] Chr3:98996903..116864886 [NCBI36] Chr3:3q11.2-13.31 |
pathogenic|uncertain significance |
GRCh38/hg38 3q13.2-13.31(chr3:112465094-115774111)x1 | copy number loss | See cases [RCV000138434] | Chr3:112465094..115774111 [GRCh38] Chr3:112183941..115492958 [GRCh37] Chr3:113666631..116975648 [NCBI36] Chr3:3q13.2-13.31 |
pathogenic |
GRCh38/hg38 3q11.1-24(chr3:93800620-145695381)x3 | copy number gain | See cases [RCV000142340] | Chr3:93800620..145695381 [GRCh38] Chr3:93519464..145413168 [GRCh37] Chr3:95002154..146895858 [NCBI36] Chr3:3q11.1-24 |
pathogenic |
GRCh38/hg38 3q13.2-13.31(chr3:112425234-115795585)x1 | copy number loss | See cases [RCV000142219] | Chr3:112425234..115795585 [GRCh38] Chr3:112144081..115514432 [GRCh37] Chr3:113626771..116997122 [NCBI36] Chr3:3q13.2-13.31 |
pathogenic |
GRCh38/hg38 3q13.2-13.33(chr3:112520553-120031022)x1 | copy number loss | See cases [RCV000142725] | Chr3:112520553..120031022 [GRCh38] Chr3:112239400..119749869 [GRCh37] Chr3:113722090..121232559 [NCBI36] Chr3:3q13.2-13.33 |
pathogenic |
NM_017945.5(SLC35A5):c.353T>G (p.Leu118Arg) | single nucleotide variant | Monoclonal B-Cell Lymphocytosis [RCV000208563] | Chr3:112570663 [GRCh38] Chr3:112289510 [GRCh37] Chr3:3q13.2 |
uncertain significance |
GRCh37/hg19 3q13.2-13.31(chr3:112144081-115514432)x1 | copy number loss | See cases [RCV000446223] | Chr3:112144081..115514432 [GRCh37] Chr3:3q13.2-13.31 |
pathogenic |
GRCh37/hg19 3q13.11-13.32(chr3:105094834-117441953)x1 | copy number loss | See cases [RCV000448410] | Chr3:105094834..117441953 [GRCh37] Chr3:3q13.11-13.32 |
pathogenic |
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 | copy number gain | See cases [RCV000511055] | Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29 |
pathogenic |
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) | copy number gain | See cases [RCV000512358] | Chr3:61892..197851986 [GRCh37] Chr3:3p26.3-q29 |
pathogenic |
GRCh37/hg19 3q13.13-13.31(chr3:110645295-115103586)x1 | copy number loss | not provided [RCV000682294] | Chr3:110645295..115103586 [GRCh37] Chr3:3q13.13-13.31 |
pathogenic |
GRCh37/hg19 3q13.2-13.31(chr3:111894832-116930109)x1 | copy number loss | not provided [RCV000682296] | Chr3:111894832..116930109 [GRCh37] Chr3:3q13.2-13.31 |
pathogenic |
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 | copy number gain | not provided [RCV000742138] | Chr3:61495..197838262 [GRCh37] Chr3:3p26.3-q29 |
pathogenic |
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 | copy number gain | not provided [RCV000742133] | Chr3:60174..197948027 [GRCh37] Chr3:3p26.3-q29 |
pathogenic |
GRCh37/hg19 3q13.2(chr3:112211278-112308287)x3 | copy number gain | not provided [RCV000742694] | Chr3:112211278..112308287 [GRCh37] Chr3:3q13.2 |
benign |
GRCh37/hg19 3q13.2-13.31(chr3:112183943-115492949)x1 | copy number loss | not provided [RCV000856645] | Chr3:112183943..115492949 [GRCh37] Chr3:3q13.2-13.31 |
pathogenic |
GRCh37/hg19 3q13.2(chr3:111929014-112773945)x3 | copy number gain | not provided [RCV000847080] | Chr3:111929014..112773945 [GRCh37] Chr3:3q13.2 |
uncertain significance |
GRCh37/hg19 3q13.2(chr3:111929014-112773945)x3 | copy number gain | not provided [RCV000846844] | Chr3:111929014..112773945 [GRCh37] Chr3:3q13.2 |
uncertain significance |
GRCh37/hg19 3q13.2-13.31(chr3:112135341-115509260)x3 | copy number gain | not provided [RCV001259226] | Chr3:112135341..115509260 [GRCh37] Chr3:3q13.2-13.31 |
pathogenic |
GRCh37/hg19 3q13.2-13.31(chr3:112144081-115514432) | copy number loss | not specified [RCV002053367] | Chr3:112144081..115514432 [GRCh37] Chr3:3q13.2-13.31 |
pathogenic |
Database | Acc Id | Source(s) |
AGR Gene | HGNC:20792 | AgrOrtholog |
COSMIC | SLC35A5 | COSMIC |
Ensembl Genes | ENSG00000138459 | Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Ensembl Protein | ENSP00000261034 | ENTREZGENE |
ENSP00000261034.2 | UniProtKB/TrEMBL | |
ENSP00000417654 | ENTREZGENE | |
ENSP00000417654.1 | UniProtKB/Swiss-Prot | |
ENSP00000418265.1 | UniProtKB/TrEMBL | |
ENSP00000419958.1 | UniProtKB/TrEMBL | |
ENSP00000420398.1 | UniProtKB/TrEMBL | |
Ensembl Transcript | ENST00000261034 | ENTREZGENE |
ENST00000261034.6 | UniProtKB/TrEMBL | |
ENST00000468642.5 | UniProtKB/TrEMBL | |
ENST00000484995.5 | UniProtKB/TrEMBL | |
ENST00000492406 | ENTREZGENE | |
ENST00000492406.6 | UniProtKB/Swiss-Prot | |
ENST00000494706.1 | UniProtKB/TrEMBL | |
GTEx | ENSG00000138459 | GTEx |
HGNC ID | HGNC:20792 | ENTREZGENE |
Human Proteome Map | SLC35A5 | Human Proteome Map |
InterPro | Nuc_sug_transpt | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
KEGG Report | hsa:55032 | UniProtKB/Swiss-Prot |
NCBI Gene | 55032 | ENTREZGENE |
PANTHER | PTHR10231 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Pfam | Nuc_sug_transp | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PharmGKB | PA134947136 | PharmGKB |
PIRSF | UDP-gal_transpt | UniProtKB/Swiss-Prot |
UniProt | C9J7U8_HUMAN | UniProtKB/TrEMBL |
C9JXZ8_HUMAN | UniProtKB/TrEMBL | |
F8WDF8_HUMAN | UniProtKB/TrEMBL | |
H7BXF8_HUMAN | UniProtKB/TrEMBL | |
L0R547_HUMAN | UniProtKB/TrEMBL | |
Q9BS91 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | D3DN66 | UniProtKB/Swiss-Prot |
Q69YY6 | UniProtKB/Swiss-Prot | |
Q6ZMD6 | UniProtKB/Swiss-Prot | |
Q9NWM9 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2015-12-08 | SLC35A5 | solute carrier family 35 member A5 | solute carrier family 35, member A5 | Symbol and/or name change | 5135510 | APPROVED |