HLA-DRA (major histocompatibility complex, class II, DR alpha) - Rat Genome Database

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Gene: HLA-DRA (major histocompatibility complex, class II, DR alpha) Homo sapiens
Analyze
Symbol: HLA-DRA
Name: major histocompatibility complex, class II, DR alpha
RGD ID: 1344093
HGNC Page HGNC:4947
Description: Enables T cell receptor binding activity; peptide antigen binding activity; and polysaccharide binding activity. Involved in several processes, including antigen processing and presentation of endogenous peptide antigen via MHC class II; antigen processing and presentation of exogenous peptide antigen via MHC class II; and regulation of T cell differentiation. Located in bounding membrane of organelle; cell surface; and immunological synapse. Part of MHC class II protein complex. Implicated in Parkinson's disease (multiple); allergic disease; asthma; and autoimmune disease (multiple). Biomarker of bipolar disorder; human immunodeficiency virus infectious disease; severe acute respiratory syndrome; and toxic shock syndrome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ51114; histocompatibility antigen HLA-DR alpha; HLA class II histocompatibility antigen, DR alpha chain; HLA-DRA1; MHC cell surface glycoprotein; MHC class II antigen DRA; MLRW
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,439,887 - 32,445,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl632,439,878 - 32,445,046 (+)EnsemblGRCh38hg38GRCh38
GRCh37632,407,664 - 32,412,823 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,515,625 - 32,520,801 (+)NCBINCBI36Build 36hg18NCBI36
Build 34632,515,624 - 32,520,799NCBI
Celera633,973,612 - 33,978,821 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,160,529 - 32,165,737 (+)NCBIHuRef
CHM1_1632,410,098 - 32,415,302 (+)NCBICHM1_1
T2T-CHM13v2.0632,292,811 - 32,297,976 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(R)-mevalonic acid  (EXP)
1,2,4-trimethylbenzene  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4,6-trinitrotoluene  (ISO)
2-nitrofluorene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
5-azacytidine  (EXP)
acetamide  (ISO)
all-trans-retinoic acid  (EXP)
amitriptyline  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (EXP)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
asbestos  (EXP)
benzene  (EXP)
benzo[a]pyrene  (EXP,ISO)
bexarotene  (ISO)
bisphenol A  (ISO)
bortezomib  (EXP)
buspirone  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (EXP)
chrysin  (EXP)
clofibric acid  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
Cuprizon  (ISO)
cyclosporin A  (EXP)
dexamethasone  (EXP,ISO)
diarsenic trioxide  (EXP)
dimethyl fumarate  (EXP)
dimethyl sulfoxide  (EXP)
diuron  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
elemental selenium  (EXP)
entinostat  (EXP)
folic acid  (ISO)
genistein  (EXP)
gentamycin  (ISO)
graphite  (ISO)
hexachlorobenzene  (ISO)
ionomycin  (ISO)
iopromide  (EXP)
lead diacetate  (ISO)
lipopolysaccharide  (EXP)
losartan  (ISO)
mercury dichloride  (ISO)
methotrexate  (EXP)
methyl methanesulfonate  (EXP)
N-nitrosodiethylamine  (ISO)
N-nitrosodimethylamine  (ISO)
nickel atom  (EXP)
nimesulide  (ISO)
oxaliplatin  (ISO)
ozone  (ISO)
paracetamol  (EXP)
paraquat  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (EXP)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP,ISO)
progesterone  (EXP)
rotenone  (ISO)
SB 431542  (EXP)
selenium atom  (EXP)
simvastatin  (EXP)
sodium arsenite  (EXP)
sulforaphane  (EXP)
tamibarotene  (EXP)
tamoxifen  (ISO)
temozolomide  (EXP)
testosterone  (ISO)
thioacetamide  (ISO)
titanium dioxide  (ISO)
toluene  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trichostatin A  (EXP)
triphenyl phosphate  (ISO)
ursodeoxycholic acid  (EXP)
valproic acid  (EXP,ISO)
vancomycin  (ISO)
vinclozolin  (ISO)
vitamin E  (EXP)
zoledronic acid  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. HLA-DMB gene and HLA-DRA promoter region polymorphisms in Australian multiple sclerosis patients. Bennetts BH, etal., Hum Immunol. 1999 Sep;60(9):886-93.
2. Coexpression of susceptible and resistant HLA class II transgenes in murine experimental autoimmune thyroiditis: DQ8 molecules downregulate DR3-mediated thyroiditis. Flynn JC, etal., J Autoimmun. 2002 May;18(3):213-20.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. HLA rs3129882 variant in Chinese Han patients with late-onset sporadic Parkinson disease. Guo Y, etal., Neurosci Lett. 2011 Sep 1;501(3):185-7. Epub 2011 Jul 20.
5. Risk alleles for multiple sclerosis identified by a genomewide study. Hafler DA, etal., N Engl J Med. 2007 Aug 30;357(9):851-62. Epub 2007 Jul 29.
6. Common genetic variation in the HLA region is associated with late-onset sporadic Parkinson's disease. Hamza TH, etal., Nat Genet. 2010 Sep;42(9):781-5. Epub 2010 Aug 15.
7. Elevated mRNA levels of major histocompatibility complex class II genes in lymphocytes of autoimmune BB rats. Holowachuk EW, etal., Diabetes. 1988 Dec;37(12):1637-40.
8. Replication of CD58 and CLEC16A as genome-wide significant risk genes for multiple sclerosis. Hoppenbrouwers IA, etal., J Hum Genet. 2009 Nov;54(11):676-80. Epub 2009 Oct 16.
9. HLA-DR4-IE chimeric class II transgenic, murine class II-deficient mice are susceptible to experimental allergic encephalomyelitis. Ito K, etal., J Exp Med. 1996 Jun 1;183(6):2635-44.
10. HLA-DRA polymorphisms associated with risk of nasal polyposis in asthmatic patients. Kim JH, etal., Am J Rhinol Allergy. 2012 Jan-Feb;26(1):12-7. doi: 10.2500/ajra.2012.26.3692.
11. Elucidating the molecular physiopathology of acute respiratory distress syndrome in severe acute respiratory syndrome patients. Kong SL, etal., Virus Res. 2009 Nov;145(2):260-9. Epub 2009 Jul 25.
12. Genome-wide association study of asthma identifies RAD50-IL13 and HLA-DR/DQ regions. Li X, etal., J Allergy Clin Immunol. 2010 Feb;125(2):328-335.e11. doi: 10.1016/j.jaci.2009.11.018.
13. Inflammation and epithelial cell injury in AIDS enteropathy: involvement of endoplasmic reticulum stress. Maingat F, etal., FASEB J. 2011 Jul;25(7):2211-20. Epub 2011 Mar 22.
14. Dermatophagoides farinae-1-derived peptides and HLA molecules recognized by T cells from atopic individuals. Matsuoka T, etal., Int Arch Allergy Immunol. 1997 Apr;112(4):365-70.
15. Genome-wide expression analysis detects eight genes with robust alterations specific to bipolar I disorder: relevance to neuronal network perturbation. Nakatani N, etal., Hum Mol Genet. 2006 Jun 15;15(12):1949-62. Epub 2006 May 10.
16. Messenger RNA expression of major histocompatibility complex class II genes in whole blood from septic shock patients. Pachot A, etal., Crit Care Med. 2005 Jan;33(1):31-8; discussion 236-7.
17. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
18. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
19. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
20. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
21. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
22. T-cell tolerance by dendritic cells and macrophages as a mechanism for the major histocompatibility complex-linked resistance to autoimmune diabetes. Thiessen S, etal., Diabetes. 2002 Feb;51(2):325-38.
23. Decreased monocyte human leukocyte antigen-DR expression after severe burn injury: Correlation with severity and secondary septic shock. Venet F, etal., Crit Care Med. 2007 Aug;35(8):1910-7.
Additional References at PubMed
PMID:1448091   PMID:1448172   PMID:1512535   PMID:1869305   PMID:1905983   PMID:1967269   PMID:1970352   PMID:1978941   PMID:2212658   PMID:2543930   PMID:2846691   PMID:3266023  
PMID:3489470   PMID:6304715   PMID:6324094   PMID:6403940   PMID:6416803   PMID:6422542   PMID:6811954   PMID:6812963   PMID:6817331   PMID:6821129   PMID:6952207   PMID:6952234  
PMID:6955026   PMID:6955253   PMID:7477400   PMID:7512597   PMID:7519244   PMID:7541827   PMID:7602119   PMID:7606781   PMID:7629508   PMID:7645219   PMID:7648393   PMID:7734415  
PMID:7835916   PMID:7912458   PMID:8084338   PMID:8145819   PMID:8152483   PMID:8168144   PMID:8316295   PMID:8376762   PMID:8450224   PMID:8454872   PMID:8574855   PMID:8649448  
PMID:8773319   PMID:8890155   PMID:8920889   PMID:9075930   PMID:9079699   PMID:9310842   PMID:9354468   PMID:9371817   PMID:9700202   PMID:9759843   PMID:9782128   PMID:10480952  
PMID:10661406   PMID:10716924   PMID:10729169   PMID:11048639   PMID:11070170   PMID:11118314   PMID:11168931   PMID:11181188   PMID:11239948   PMID:11260509   PMID:11294926   PMID:11298540  
PMID:11320565   PMID:11361223   PMID:11432818   PMID:11464148   PMID:11487543   PMID:11593029   PMID:11742191   PMID:11751963   PMID:11777970   PMID:11827988   PMID:11854199   PMID:11927549  
PMID:12006557   PMID:12073071   PMID:12074713   PMID:12117677   PMID:12202216   PMID:12230470   PMID:12244309   PMID:12370403   PMID:12373032   PMID:12427289   PMID:12445311   PMID:12477932  
PMID:12519789   PMID:12580031   PMID:12707403   PMID:12836198   PMID:12932352   PMID:12970439   PMID:14574404   PMID:14736971   PMID:14976194   PMID:15078178   PMID:15105429   PMID:15194762  
PMID:15265931   PMID:15301866   PMID:15322540   PMID:15361126   PMID:15467430   PMID:15489334   PMID:15489916   PMID:15536412   PMID:15688398   PMID:15784911   PMID:15836703   PMID:16091223  
PMID:16242130   PMID:16341674   PMID:16354571   PMID:16454711   PMID:16973583   PMID:17411376   PMID:17431094   PMID:17507489   PMID:17583734   PMID:17652306   PMID:17662350   PMID:17959659  
PMID:18270567   PMID:18305173   PMID:18371160   PMID:18389477   PMID:18672082   PMID:18697946   PMID:18836448   PMID:18846964   PMID:18931722   PMID:18932050   PMID:18939942   PMID:18945465  
PMID:18987644   PMID:19046302   PMID:19047245   PMID:19056867   PMID:19116923   PMID:19117940   PMID:19120278   PMID:19122664   PMID:19143821   PMID:19149577   PMID:19188433   PMID:19199708  
PMID:19204726   PMID:19247692   PMID:19287509   PMID:19430480   PMID:19449444   PMID:19525953   PMID:19620308   PMID:19648278   PMID:19660582   PMID:19770068   PMID:19786618   PMID:19820697  
PMID:19851445   PMID:19861958   PMID:19913121   PMID:20012522   PMID:20041166   PMID:20118277   PMID:20159113   PMID:20202859   PMID:20228798   PMID:20232575   PMID:20237496   PMID:20362271  
PMID:20378664   PMID:20410501   PMID:20458337   PMID:20497195   PMID:20546939   PMID:20584675   PMID:20587610   PMID:20628086   PMID:20686565   PMID:21037568   PMID:21072187   PMID:21085635  
PMID:21282653   PMID:21297633   PMID:21482477   PMID:21502329   PMID:21602797   PMID:21778700   PMID:21779181   PMID:21804548   PMID:21804607   PMID:21873635   PMID:21898163   PMID:21922073  
PMID:22096524   PMID:22103833   PMID:22103834   PMID:22167754   PMID:22175768   PMID:22243834   PMID:22286212   PMID:22541561   PMID:22733780   PMID:22808111   PMID:22860026   PMID:22889831  
PMID:22890421   PMID:23028341   PMID:23028483   PMID:23083294   PMID:23100517   PMID:23128233   PMID:23152536   PMID:23170932   PMID:23227193   PMID:23260142   PMID:23264739   PMID:23349640  
PMID:23376485   PMID:23449627   PMID:23472185   PMID:23579001   PMID:23729440   PMID:23850713   PMID:23878500   PMID:24039160   PMID:24097068   PMID:24214983   PMID:24282030   PMID:24384427  
PMID:24493819   PMID:24505475   PMID:24511991   PMID:24600555   PMID:24636145   PMID:24849299   PMID:24904546   PMID:24943344   PMID:24962563   PMID:25057007   PMID:25108386   PMID:25186300  
PMID:25224099   PMID:25240755   PMID:25319953   PMID:25386736   PMID:25695487   PMID:25720714   PMID:25792471   PMID:25998395   PMID:26186194   PMID:26757431   PMID:26764036   PMID:27114505  
PMID:27144640   PMID:27356905   PMID:27591323   PMID:28131168   PMID:28229240   PMID:28467828   PMID:28514442   PMID:28771573   PMID:29884618   PMID:29905830   PMID:30962219   PMID:31082373  
PMID:31237711   PMID:31386235   PMID:31617688   PMID:31753913   PMID:32180339   PMID:32253955   PMID:32306077   PMID:32526160   PMID:33022050   PMID:33144569   PMID:33961781   PMID:34311991  
PMID:34402606   PMID:34858413   PMID:35543859   PMID:35794593   PMID:35895219  


Genomics

Comparative Map Data
HLA-DRA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38632,439,887 - 32,445,046 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl632,439,878 - 32,445,046 (+)EnsemblGRCh38hg38GRCh38
GRCh37632,407,664 - 32,412,823 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36632,515,625 - 32,520,801 (+)NCBINCBI36Build 36hg18NCBI36
Build 34632,515,624 - 32,520,799NCBI
Celera633,973,612 - 33,978,821 (+)NCBICelera
Cytogenetic Map6p21.32NCBI
HuRef632,160,529 - 32,165,737 (+)NCBIHuRef
CHM1_1632,410,098 - 32,415,302 (+)NCBICHM1_1
T2T-CHM13v2.0632,292,811 - 32,297,976 (+)NCBIT2T-CHM13v2.0
H2-Ea
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391734,560,926 - 34,563,619 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1734,560,926 - 34,563,618 (-)EnsemblGRCm39 Ensembl
GRCm381734,341,952 - 34,344,645 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1734,341,959 - 34,344,645 (-)EnsemblGRCm38mm10GRCm38
MGSCv371734,478,902 - 34,484,492 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361734,479,157 - 34,481,590 (-)NCBIMGSCv36mm8
Celera1737,104,259 - 37,109,038 (-)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1717.98NCBI
RT1-Da
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2204,513,464 - 4,518,457 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl204,512,911 - 4,518,455 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx205,276,067 - 5,281,031 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0204,637,807 - 4,642,772 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0205,110,863 - 5,115,835 (+)NCBIRnor_WKY
Rnor_6.0204,127,644 - 4,132,616 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,127,644 - 4,132,616 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,207,782 - 6,212,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4204,636,310 - 4,641,282 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera206,115,646 - 6,120,618 (+)NCBICelera
Cytogenetic Map20p12NCBI
LOC102019320
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554371,109,713 - 1,114,802 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554371,109,735 - 1,114,742 (+)NCBIChiLan1.0ChiLan1.0
LOC100987081
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,982,228 - 32,987,417 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,982,228 - 32,987,417 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0632,105,421 - 32,110,579 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
DLA-DRA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1122,133,026 - 2,137,825 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl122,132,499 - 2,168,975 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha122,282,352 - 2,285,906 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0122,409,388 - 2,414,180 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl122,409,425 - 2,449,778 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1122,132,677 - 2,136,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0122,213,826 - 2,217,378 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0122,287,866 - 2,291,417 (+)NCBIUU_Cfam_GSD_1.0
LOC101969065
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494637,016,438 - 37,021,225 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936727540,217 - 545,036 (-)EnsemblSpeTri2.0
SpeTri2.0NW_004936727540,225 - 544,968 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLA-DRA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl724,825,054 - 24,835,158 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1724,825,037 - 24,830,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2729,036,552 - 29,042,147 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap7q1.1NCBI
MHC-DRA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11739,623,324 - 39,628,464 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1739,622,402 - 39,629,261 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604432,311,484 - 32,316,629 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101706353
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475424,079,366 - 24,084,512 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475424,079,459 - 24,086,342 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HLA-DRA
19 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:318
Count of miRNA genes:153
Interacting mature miRNAs:155
Transcripts:ENST00000374982, ENST00000395388
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
GDB:177843  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,406,924 - 32,407,695UniSTSGRCh37
Build 36632,514,902 - 32,515,673RGDNCBI36
Celera633,972,917 - 33,973,688RGD
Cytogenetic Map6p21.3UniSTS
HuRef632,159,834 - 32,160,605UniSTS
PMC153210P2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,410,417 - 32,410,994UniSTSGRCh37
Build 36632,518,395 - 32,518,972RGDNCBI36
Celera633,976,407 - 33,976,984RGD
Cytogenetic Map6p21.3UniSTS
HuRef632,163,323 - 32,163,900UniSTS
PMC166015P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,410,413 - 32,411,021UniSTSGRCh37
Build 36632,518,391 - 32,518,999RGDNCBI36
Celera633,976,403 - 33,977,011RGD
Cytogenetic Map6p21.3UniSTS
HuRef632,163,319 - 32,163,927UniSTS
PMC204479P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,411,532 - 32,411,684UniSTSGRCh37
Build 36632,519,510 - 32,519,662RGDNCBI36
Celera633,977,522 - 33,977,674RGD
Cytogenetic Map6p21.3UniSTS
HuRef632,164,438 - 32,164,590UniSTS
PMC87290P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,407,584 - 32,407,663UniSTSGRCh37
Build 36632,515,562 - 32,515,641RGDNCBI36
Celera633,973,577 - 33,973,656RGD
Cytogenetic Map6p21.3UniSTS
HuRef632,160,494 - 32,160,573UniSTS
HLA-DRA_3387  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,412,464 - 32,412,998UniSTSGRCh37
Build 36632,520,442 - 32,520,976RGDNCBI36
Celera633,978,462 - 33,978,996RGD
HuRef632,165,378 - 32,165,912UniSTS
RH78783  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37632,410,326 - 32,410,985UniSTSGRCh37
Celera633,976,316 - 33,976,975UniSTS
Cytogenetic Map6p21.3UniSTS
HuRef632,163,232 - 32,163,891UniSTS
GeneMap99-GB4 RH Map6145.45UniSTS
NCBI RH Map6509.1UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 137 329 120 44 1147 45 510 4 270 115 125 606 269 249
Medium 2199 2652 1568 554 755 390 3634 2136 3009 262 1238 822 168 1 935 2532 4 2
Low 33 10 18 12 28 14 192 25 400 21 35 48 3 7
Below cutoff 28 6 5 13 7 17 12 25 11 41 64 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_019111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF481359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH001506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI492718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK301354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL670296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL935032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM910168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AM910169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428116 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428120 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428121 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428142 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY428144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY669025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY669055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY669056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG548634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM849755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX120007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR354545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR753634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR759779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  J00201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  K01171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ657694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ657695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ657696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ657697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY497357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC628747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC628748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LC628749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR606285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M35979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OW496055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX111333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333553 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  OX333555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V00523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V00524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  V00528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X00274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z84814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000374982   ⟹   ENSP00000364121
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl632,439,878 - 32,445,046 (+)Ensembl
RefSeq Acc Id: ENST00000395388   ⟹   ENSP00000378786
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl632,439,887 - 32,445,046 (+)Ensembl
RefSeq Acc Id: NM_019111   ⟹   NP_061984
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38632,439,887 - 32,445,046 (+)NCBI
GRCh37632,407,619 - 32,412,823 (+)ENTREZGENE
GRCh37632,407,619 - 32,412,823 (+)NCBI
Build 36632,515,625 - 32,520,801 (+)NCBI Archive
HuRef632,160,529 - 32,165,737 (+)ENTREZGENE
CHM1_1632,410,098 - 32,415,302 (+)NCBI
T2T-CHM13v2.0632,292,811 - 32,297,976 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_061984 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA36272 (Get FASTA)   NCBI Sequence Viewer  
  AAA36275 (Get FASTA)   NCBI Sequence Viewer  
  AAA36283 (Get FASTA)   NCBI Sequence Viewer  
  AAA36301 (Get FASTA)   NCBI Sequence Viewer  
  AAA36302 (Get FASTA)   NCBI Sequence Viewer  
  AAA59783 (Get FASTA)   NCBI Sequence Viewer  
  AAA59785 (Get FASTA)   NCBI Sequence Viewer  
  AAA59787 (Get FASTA)   NCBI Sequence Viewer  
  AAH32350 (Get FASTA)   NCBI Sequence Viewer  
  AAH71659 (Get FASTA)   NCBI Sequence Viewer  
  AAO23887 (Get FASTA)   NCBI Sequence Viewer  
  AAV74559 (Get FASTA)   NCBI Sequence Viewer  
  AAV74560 (Get FASTA)   NCBI Sequence Viewer  
  AHW47918 (Get FASTA)   NCBI Sequence Viewer  
  AHW47935 (Get FASTA)   NCBI Sequence Viewer  
  AHW47952 (Get FASTA)   NCBI Sequence Viewer  
  AHW47969 (Get FASTA)   NCBI Sequence Viewer  
  ARB08428 (Get FASTA)   NCBI Sequence Viewer  
  ARB08429 (Get FASTA)   NCBI Sequence Viewer  
  ARB08430 (Get FASTA)   NCBI Sequence Viewer  
  ARB08431 (Get FASTA)   NCBI Sequence Viewer  
  ARB08432 (Get FASTA)   NCBI Sequence Viewer  
  ARB08433 (Get FASTA)   NCBI Sequence Viewer  
  ARB08434 (Get FASTA)   NCBI Sequence Viewer  
  ARB08435 (Get FASTA)   NCBI Sequence Viewer  
  ARB08436 (Get FASTA)   NCBI Sequence Viewer  
  ARB08437 (Get FASTA)   NCBI Sequence Viewer  
  ARB08438 (Get FASTA)   NCBI Sequence Viewer  
  ARB08439 (Get FASTA)   NCBI Sequence Viewer  
  ARB08440 (Get FASTA)   NCBI Sequence Viewer  
  ARB08441 (Get FASTA)   NCBI Sequence Viewer  
  ARB08442 (Get FASTA)   NCBI Sequence Viewer  
  ARB08443 (Get FASTA)   NCBI Sequence Viewer  
  ARB08444 (Get FASTA)   NCBI Sequence Viewer  
  ARB08445 (Get FASTA)   NCBI Sequence Viewer  
  ARB08446 (Get FASTA)   NCBI Sequence Viewer  
  ARB08447 (Get FASTA)   NCBI Sequence Viewer  
  BAG35943 (Get FASTA)   NCBI Sequence Viewer  
  BAG59560 (Get FASTA)   NCBI Sequence Viewer  
  BAG62726 (Get FASTA)   NCBI Sequence Viewer  
  BAG62899 (Get FASTA)   NCBI Sequence Viewer  
  BAG65256 (Get FASTA)   NCBI Sequence Viewer  
  BAH13427 (Get FASTA)   NCBI Sequence Viewer  
  BCU73678 (Get FASTA)   NCBI Sequence Viewer  
  BCU73679 (Get FASTA)   NCBI Sequence Viewer  
  BCU73680 (Get FASTA)   NCBI Sequence Viewer  
  CAA23782 (Get FASTA)   NCBI Sequence Viewer  
  CAA23783 (Get FASTA)   NCBI Sequence Viewer  
  CAA23787 (Get FASTA)   NCBI Sequence Viewer  
  CAA25076 (Get FASTA)   NCBI Sequence Viewer  
  CAB06609 (Get FASTA)   NCBI Sequence Viewer  
  CAG33294 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618616 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618618 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618619 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618620 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618621 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618622 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618623 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618624 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618626 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618627 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618629 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618640 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618641 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618642 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618644 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618645 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618646 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618647 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618648 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618649 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618650 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618651 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618652 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618653 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618655 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618657 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618658 (Get FASTA)   NCBI Sequence Viewer  
  CAH2618659 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161907 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161908 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161910 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161913 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161917 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161918 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161921 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161922 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161923 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161925 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161929 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161932 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161934 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161935 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161936 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161938 (Get FASTA)   NCBI Sequence Viewer  
  CAH8161939 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387914 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387915 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387916 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387947 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387958 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387971 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387972 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387973 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387976 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387977 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387978 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387979 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387981 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387986 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387995 (Get FASTA)   NCBI Sequence Viewer  
  CAI2387999 (Get FASTA)   NCBI Sequence Viewer  
  CAI2388000 (Get FASTA)   NCBI Sequence Viewer  
  CAI2388003 (Get FASTA)   NCBI Sequence Viewer  
  CAI2388004 (Get FASTA)   NCBI Sequence Viewer  
  CAI2388005 (Get FASTA)   NCBI Sequence Viewer  
  CAI2388006 (Get FASTA)   NCBI Sequence Viewer  
  CAP40292 (Get FASTA)   NCBI Sequence Viewer  
  CAP40293 (Get FASTA)   NCBI Sequence Viewer  
  EAX03629 (Get FASTA)   NCBI Sequence Viewer  
  EAX03630 (Get FASTA)   NCBI Sequence Viewer  
  EAX03631 (Get FASTA)   NCBI Sequence Viewer  
  P01903 (Get FASTA)   NCBI Sequence Viewer  
  VUF79919 (Get FASTA)   NCBI Sequence Viewer  
  VUF80073 (Get FASTA)   NCBI Sequence Viewer  
  VUF80074 (Get FASTA)   NCBI Sequence Viewer  
  VUF80075 (Get FASTA)   NCBI Sequence Viewer  
  VUF80076 (Get FASTA)   NCBI Sequence Viewer  
  VUF82240 (Get FASTA)   NCBI Sequence Viewer  
  VUF82727 (Get FASTA)   NCBI Sequence Viewer  
  VUF82728 (Get FASTA)   NCBI Sequence Viewer  
  VUF82729 (Get FASTA)   NCBI Sequence Viewer  
  VUF82730 (Get FASTA)   NCBI Sequence Viewer  
  VUF82731 (Get FASTA)   NCBI Sequence Viewer  
  VUG15778 (Get FASTA)   NCBI Sequence Viewer  
  VUG15779 (Get FASTA)   NCBI Sequence Viewer  
  VUG15780 (Get FASTA)   NCBI Sequence Viewer  
  VUG15781 (Get FASTA)   NCBI Sequence Viewer  
  VUG15782 (Get FASTA)   NCBI Sequence Viewer  
  VUG15783 (Get FASTA)   NCBI Sequence Viewer  
  VUG15784 (Get FASTA)   NCBI Sequence Viewer  
  VUG15785 (Get FASTA)   NCBI Sequence Viewer  
  VUG15786 (Get FASTA)   NCBI Sequence Viewer  
  VUG15787 (Get FASTA)   NCBI Sequence Viewer  
  VUG15788 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_061984   ⟸   NM_019111
- Peptide Label: precursor
- UniProtKB: Q9TP70 (UniProtKB/Swiss-Prot),   P01903 (UniProtKB/Swiss-Prot),   A0A0G2JMH6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000364121   ⟸   ENST00000374982
RefSeq Acc Id: ENSP00000378786   ⟸   ENST00000395388
Protein Domains
Ig-like   Ig-like C1-type   IGc1   MHC_II_alpha

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JMH6-F1-model_v2 AlphaFold A0A0G2JMH6 1-254 view protein structure
AF-P01903-F1-model_v2 AlphaFold P01903 1-254 view protein structure

Promoters
RGD ID:6872788
Promoter ID:EPDNEW_H9559
Type:initiation region
Name:HLA-DRA_1
Description:major histocompatibility complex, class II, DR alpha
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38632,439,887 - 32,439,947EPDNEW
RGD ID:6804346
Promoter ID:HG_KWN:53096
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:OTTHUMT00000076586,   OTTHUMT00000272897,   UC003OBI.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36632,514,931 - 32,515,702 (+)MPROMDB
RGD ID:6850382
Promoter ID:EP07121
Type:initiation region
Name:HS_HLA-DRA
Description:Class II transplantation antigens of major histocompatibilitycomplex.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Nuclease protection with homologous sequence ladder; NEDO full length human cDNA sequencing project.; Oligo-capping; Mammalian gene collection (MGC) full-length cDNA cloning
Regulation:lymphoid cells; (induced by or strongly expressed in) antigen
Position:
Human AssemblyChrPosition (strand)Source
Build 36632,515,642 - 32,515,702EPD

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_019111.4(HLA-DRA):c.3G>A (p.Met1Ile) single nucleotide variant Malignant melanoma [RCV000067308] Chr6:32439953 [GRCh38]
Chr6:32407730 [GRCh37]
Chr6:32515708 [NCBI36]
Chr6:6p21.32
not provided
NM_019111.4(HLA-DRA):c.337G>A (p.Glu113Lys) single nucleotide variant Malignant melanoma [RCV000061399] Chr6:32443193 [GRCh38]
Chr6:32410970 [GRCh37]
Chr6:32518948 [NCBI36]
Chr6:6p21.32
not provided
GRCh38/hg38 6p21.32(chr6:32444210-32584357)x3 copy number gain See cases [RCV000136195] Chr6:32444210..32584357 [GRCh38]
Chr6:32411987..32552134 [GRCh37]
Chr6:32519965..32660112 [NCBI36]
Chr6:6p21.32
benign
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
Single allele complex Ductal breast carcinoma [RCV000207075] Chr6:32188383..32629802 [GRCh37]
Chr6:6p21.32
uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
NM_019111.5(HLA-DRA):c.611-7C>T single nucleotide variant not provided [RCV000972247] Chr6:32443749 [GRCh38]
Chr6:32411526 [GRCh37]
Chr6:6p21.32
benign
NM_019111.5(HLA-DRA):c.129A>G (p.Gln43=) single nucleotide variant not provided [RCV000920143] Chr6:32442494 [GRCh38]
Chr6:32410271 [GRCh37]
Chr6:6p21.32
benign
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
GRCh37/hg19 6p21.33-21.32(chr6:32027371-32448599)x3 copy number gain not provided [RCV000846873] Chr6:32027371..32448599 [GRCh37]
Chr6:6p21.33-21.32
uncertain significance
GRCh37/hg19 6p21.33-21.31(chr6:31036397-34088832)x3 copy number gain not provided [RCV001005791] Chr6:31036397..34088832 [GRCh37]
Chr6:6p21.33-21.31
likely pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:4947 AgrOrtholog
COSMIC HLA-DRA COSMIC
Ensembl Genes ENSG00000204287 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000206308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000226260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000227993 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000228987 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000230726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000234794 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000277263 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000364121.5 UniProtKB/TrEMBL
  ENSP00000372608.2 UniProtKB/Swiss-Prot
  ENSP00000372745.3 UniProtKB/TrEMBL
  ENSP00000372746.2 UniProtKB/Swiss-Prot
  ENSP00000378786 ENTREZGENE
  ENSP00000378786.2 UniProtKB/Swiss-Prot
  ENSP00000392789.2 UniProtKB/TrEMBL
  ENSP00000398838.2 UniProtKB/TrEMBL
  ENSP00000402951.2 UniProtKB/Swiss-Prot
  ENSP00000403385.2 UniProtKB/TrEMBL
  ENSP00000404533.2 UniProtKB/Swiss-Prot
  ENSP00000405295.2 UniProtKB/Swiss-Prot
  ENSP00000410443.2 UniProtKB/Swiss-Prot
  ENSP00000411610.2 UniProtKB/TrEMBL
  ENSP00000412562.2 UniProtKB/TrEMBL
  ENSP00000479287 UniProtKB/TrEMBL
  ENSP00000479287.1 UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000374982.5 UniProtKB/TrEMBL
  ENST00000383127.6 UniProtKB/Swiss-Prot
  ENST00000383258.3 UniProtKB/TrEMBL
  ENST00000383259.6 UniProtKB/Swiss-Prot
  ENST00000395388 ENTREZGENE
  ENST00000395388.7 UniProtKB/Swiss-Prot
  ENST00000411505.2 UniProtKB/TrEMBL
  ENST00000411524.6 UniProtKB/Swiss-Prot
  ENST00000414698.6 UniProtKB/Swiss-Prot
  ENST00000415767.2 UniProtKB/TrEMBL
  ENST00000416883.6 UniProtKB/Swiss-Prot
  ENST00000418111.2 UniProtKB/TrEMBL
  ENST00000427753.2 UniProtKB/TrEMBL
  ENST00000434866.2 UniProtKB/TrEMBL
  ENST00000442960.6 UniProtKB/Swiss-Prot
  ENST00000613328 UniProtKB/TrEMBL
  ENST00000613328.1 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.10.320.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000204287 GTEx
  ENSG00000206308 GTEx
  ENSG00000226260 GTEx
  ENSG00000227993 GTEx
  ENSG00000228987 GTEx
  ENSG00000230726 GTEx
  ENSG00000234794 GTEx
  ENSG00000277263 GTEx
HGNC ID HGNC:4947 ENTREZGENE
Human Proteome Map HLA-DRA Human Proteome Map
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_I/II-like_Ag-recog UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_II_a/b_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_II_a_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:3122 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 3122 ENTREZGENE
OMIM 142860 OMIM
Pfam C1-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA35071 PharmGKB
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IG_MHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHC_II_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF54452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JH46_HUMAN UniProtKB/TrEMBL
  A0A0G2JMH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A1V0E3V4_HUMAN UniProtKB/TrEMBL
  A1A435_HUMAN UniProtKB/TrEMBL
  A1A436_HUMAN UniProtKB/TrEMBL
  B0UXD8_HUMAN UniProtKB/TrEMBL
  DRA_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q30118_HUMAN UniProtKB/TrEMBL
  Q30125_HUMAN UniProtKB/TrEMBL
  Q9TP70 ENTREZGENE
UniProt Secondary A2BET4 UniProtKB/Swiss-Prot
  Q30160 UniProtKB/Swiss-Prot
  Q6IAZ1 UniProtKB/Swiss-Prot
  Q861I2 UniProtKB/Swiss-Prot
  Q9TP70 UniProtKB/Swiss-Prot