ZNF25 (zinc finger protein 25) - Rat Genome Database

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Gene: ZNF25 (zinc finger protein 25) Homo sapiens
Analyze
Symbol: ZNF25
Name: zinc finger protein 25
RGD ID: 1344079
HGNC Page HGNC:13043
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: DKFZp564C206; FLJ31890; KOX19; Zfp9; zinc finger protein 25 (KOX 19); zinc finger protein KOX19
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381037,949,573 - 37,976,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1037,949,573 - 37,976,647 (-)EnsemblGRCh38hg38GRCh38
GRCh371038,238,501 - 38,265,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361038,278,801 - 38,305,459 (-)NCBINCBI36Build 36hg18NCBI36
Build 341038,278,800 - 38,305,459NCBI
Celera1038,009,589 - 38,036,247 (-)NCBICelera
Cytogenetic Map10p11.21NCBI
HuRef1037,946,651 - 37,973,307 (-)NCBIHuRef
CHM1_11038,239,278 - 38,265,887 (-)NCBICHM1_1
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1639412   PMID:2288909   PMID:8464732   PMID:10942432   PMID:12477932   PMID:12566394   PMID:14702039   PMID:15342556   PMID:15489334   PMID:16344560   PMID:16385451   PMID:19274049  
PMID:21873635   PMID:24623722   PMID:27814695   PMID:28298427   PMID:32296183   PMID:35563538  


Genomics

Comparative Map Data
ZNF25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381037,949,573 - 37,976,647 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1037,949,573 - 37,976,647 (-)EnsemblGRCh38hg38GRCh38
GRCh371038,238,501 - 38,265,575 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361038,278,801 - 38,305,459 (-)NCBINCBI36Build 36hg18NCBI36
Build 341038,278,800 - 38,305,459NCBI
Celera1038,009,589 - 38,036,247 (-)NCBICelera
Cytogenetic Map10p11.21NCBI
HuRef1037,946,651 - 37,973,307 (-)NCBIHuRef
CHM1_11038,239,278 - 38,265,887 (-)NCBICHM1_1
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBIT2T-CHM13v2.0
Zfp9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396118,438,911 - 118,456,922 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6118,438,911 - 118,456,281 (-)EnsemblGRCm39 Ensembl
GRCm386118,461,950 - 118,479,961 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6118,461,950 - 118,479,320 (-)EnsemblGRCm38mm10GRCm38
MGSCv376118,411,968 - 118,429,291 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366118,427,593 - 118,444,877 (-)NCBIMGSCv36mm8
Celera6120,293,668 - 120,310,993 (-)NCBICelera
Cytogenetic Map6F1NCBI
cM Map655.86NCBI
Zfp9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84153,311,020 - 153,329,038 (-)NCBIGRCr8
mRatBN7.24151,638,724 - 151,656,740 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4151,638,711 - 151,656,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4157,903,488 - 157,920,845 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04153,687,151 - 153,704,508 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04152,310,498 - 152,327,855 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04150,482,989 - 150,533,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4150,482,667 - 150,506,557 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4150,517,027 - 150,522,351 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04216,439,332 - 216,457,348 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44154,768,614 - 154,786,630 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4140,507,510 - 140,525,512 (-)NCBICelera
Cytogenetic Map4q42NCBI
Znf25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955546956,552 - 962,677 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955546947,659 - 973,151 (+)NCBIChiLan1.0ChiLan1.0
LOC103782649
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2850,587,080 - 50,609,067 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11050,592,408 - 50,614,407 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01038,005,669 - 38,027,962 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11038,552,861 - 38,574,833 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1038,552,861 - 38,575,476 (-)Ensemblpanpan1.1panPan2
LOC479185
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.14261,916 - 296,972 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl4263,488 - 296,916 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha4304,698 - 339,692 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.04286,955 - 321,748 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl4288,933 - 321,680 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.14272,007 - 302,860 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.04379,513 - 414,203 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.04641,294 - 676,302 (-)NCBIUU_Cfam_GSD_1.0
Znf25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721384,265,879 - 84,267,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366172,514,791 - 2,518,106 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366172,516,578 - 2,518,106 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1460,938,870 - 60,968,870 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11460,937,624 - 60,969,013 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21465,774,218 - 65,802,895 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Znf25
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462492257,547 - 81,209 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462492255,607 - 80,977 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZNF25
13 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 10p11.22-11.1(chr10:31999920-38119681)x3 copy number gain See cases [RCV000135414] Chr10:31999920..38119681 [GRCh38]
Chr10:32288848..38408609 [GRCh37]
Chr10:32328854..38448615 [NCBI36]
Chr10:10p11.22-11.1
pathogenic
GRCh38/hg38 10p11.21-11.1(chr10:37951330-38067080)x1 copy number loss See cases [RCV000136777] Chr10:37951330..38067080 [GRCh38]
Chr10:38240258..38356008 [GRCh37]
Chr10:38280264..38396014 [NCBI36]
Chr10:10p11.21-11.1
benign
GRCh38/hg38 10p15.1-q11.22(chr10:4604734-48074662)x3 copy number gain See cases [RCV000141497] Chr10:4604734..48074662 [GRCh38]
Chr10:4646926..47531169 [GRCh37]
Chr10:4636926..47125152 [NCBI36]
Chr10:10p15.1-q11.22
benign
GRCh37/hg19 10p15.3-q26.3(chr10:93297-135378918)x3 copy number gain See cases [RCV000448750] Chr10:93297..135378918 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143) copy number gain See cases [RCV000511389] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic|uncertain significance
GRCh37/hg19 10p15.3-q11.23(chr10:100026-50961640)x3 copy number gain See cases [RCV000510893] Chr10:100026..50961640 [GRCh37]
Chr10:10p15.3-q11.23
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:100027-135427143)x3 copy number gain See cases [RCV000510861] Chr10:100027..135427143 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p11.21-11.1(chr10:36797203-38900673)x3 copy number gain not provided [RCV000683271] Chr10:36797203..38900673 [GRCh37]
Chr10:10p11.21-11.1
uncertain significance
GRCh37/hg19 10p15.3-q26.3(chr10:98087-135477883)x3 copy number gain not provided [RCV000749465] Chr10:98087..135477883 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p15.3-q26.3(chr10:73232-135524321)x3 copy number gain not provided [RCV000749464] Chr10:73232..135524321 [GRCh37]
Chr10:10p15.3-q26.3
pathogenic
GRCh37/hg19 10p11.21-q11.22(chr10:37149872-46169876)x3 copy number gain not provided [RCV000762700] Chr10:37149872..46169876 [GRCh37]
Chr10:10p11.21-q11.22
likely pathogenic
GRCh37/hg19 10p11.21-11.1(chr10:37189335-38900673)x3 copy number gain not provided [RCV001006315] Chr10:37189335..38900673 [GRCh37]
Chr10:10p11.21-11.1
likely benign
GRCh37/hg19 10p11.1(chr10:38200400-38282618)x1 copy number loss not provided [RCV001006317] Chr10:38200400..38282618 [GRCh37]
Chr10:10p11.1
uncertain significance
GRCh37/hg19 10p11.1(chr10:38064033-38900673)x3 copy number gain not provided [RCV001006316] Chr10:38064033..38900673 [GRCh37]
Chr10:10p11.1
likely benign
GRCh37/hg19 10p15.3-q11.22(chr10:135655-47688677)x4 copy number gain Mosaic supernumerary isodicentric chromosome 10 [RCV001825164] Chr10:135655..47688677 [GRCh37]
Chr10:10p15.3-q11.22
not provided
GRCh37/hg19 10p11.21-11.1(chr10:37697888-38677334) copy number gain not specified [RCV002052868] Chr10:37697888..38677334 [GRCh37]
Chr10:10p11.21-11.1
uncertain significance
NM_145011.4(ZNF25):c.529A>G (p.Lys177Glu) single nucleotide variant Inborn genetic diseases [RCV002990971] Chr10:37952969 [GRCh38]
Chr10:38241897 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.64T>C (p.Trp22Arg) single nucleotide variant Inborn genetic diseases [RCV002902386] Chr10:37957498 [GRCh38]
Chr10:38246426 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.900C>G (p.His300Gln) single nucleotide variant Inborn genetic diseases [RCV002738303] Chr10:37952598 [GRCh38]
Chr10:38241526 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.521A>G (p.Tyr174Cys) single nucleotide variant Inborn genetic diseases [RCV002694387] Chr10:37952977 [GRCh38]
Chr10:38241905 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.226C>T (p.Arg76Trp) single nucleotide variant Inborn genetic diseases [RCV002987466] Chr10:37957032 [GRCh38]
Chr10:38245960 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.1192T>C (p.Tyr398His) single nucleotide variant Inborn genetic diseases [RCV002703580] Chr10:37952306 [GRCh38]
Chr10:38241234 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.175A>G (p.Lys59Glu) single nucleotide variant Inborn genetic diseases [RCV002769381] Chr10:37957083 [GRCh38]
Chr10:38246011 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.1109A>G (p.Tyr370Cys) single nucleotide variant Inborn genetic diseases [RCV002746837] Chr10:37952389 [GRCh38]
Chr10:38241317 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.14A>G (p.Gln5Arg) single nucleotide variant Inborn genetic diseases [RCV002807438] Chr10:37971709 [GRCh38]
Chr10:38260637 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.1193A>T (p.Tyr398Phe) single nucleotide variant Inborn genetic diseases [RCV003277494] Chr10:37952305 [GRCh38]
Chr10:38241233 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.1001G>A (p.Arg334Gln) single nucleotide variant Inborn genetic diseases [RCV003180971] Chr10:37952497 [GRCh38]
Chr10:38241425 [GRCh37]
Chr10:10p11.21
uncertain significance
NM_145011.4(ZNF25):c.800T>C (p.Phe267Ser) single nucleotide variant Inborn genetic diseases [RCV003195418] Chr10:37952698 [GRCh38]
Chr10:38241626 [GRCh37]
Chr10:10p11.21
uncertain significance
GRCh37/hg19 10p14-q26.3(chr10:11138692-135427143) copy number gain Distal trisomy 10q [RCV003319593] Chr10:11138692..135427143 [GRCh37]
Chr10:10p14-q26.3
pathogenic
GRCh37/hg19 10p13-q26.3(chr10:12829206-135427143) copy number loss Distal 10q deletion syndrome [RCV003319583] Chr10:12829206..135427143 [GRCh37]
Chr10:10p13-q26.3
pathogenic
NM_145011.4(ZNF25):c.1077A>T (p.Lys359Asn) single nucleotide variant Inborn genetic diseases [RCV003378909] Chr10:37952421 [GRCh38]
Chr10:38241349 [GRCh37]
Chr10:10p11.21
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1047
Count of miRNA genes:701
Interacting mature miRNAs:775
Transcripts:ENST00000302609, ENST00000374633, ENST00000467975
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH66187  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371038,238,825 - 38,238,977UniSTSGRCh37
Build 361038,278,831 - 38,278,983RGDNCBI36
Celera1038,009,619 - 38,009,771RGD
Cytogenetic Map10p11.1UniSTS
HuRef1037,946,681 - 37,946,833UniSTS
RH44706  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371038,239,654 - 38,239,774UniSTSGRCh37
Build 361038,279,660 - 38,279,780RGDNCBI36
Celera1038,010,448 - 38,010,568RGD
Cytogenetic Map10p11.1UniSTS
HuRef1037,947,510 - 37,947,630UniSTS
GDB:193877  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37999,500,390 - 99,500,451UniSTSGRCh37
GRCh371038,241,585 - 38,241,732UniSTSGRCh37
Build 36998,540,211 - 98,540,272RGDNCBI36
Celera969,941,709 - 69,941,770RGD
Celera1038,012,379 - 38,012,526UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map10p11.1UniSTS
HuRef1037,949,441 - 37,949,588UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1609 1476 982 29 465 11 3052 1671 3057 157 962 1160 20 1031 2244 1
Low 828 1415 740 591 1381 450 1300 526 676 262 497 453 154 1 173 544 5 2
Below cutoff 2 100 4 4 104 4 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001329647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_145011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011519356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047424716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054365011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ491696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK056635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL117337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC036038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP229986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA113590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA306585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA320329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB042775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X52350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000302609   ⟹   ENSP00000302222
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1037,949,573 - 37,976,647 (-)Ensembl
RefSeq Acc Id: ENST00000374633
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1037,950,567 - 37,976,627 (-)Ensembl
RefSeq Acc Id: ENST00000467975
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1037,953,063 - 37,976,592 (-)Ensembl
RefSeq Acc Id: NM_001329647   ⟹   NP_001316576
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329648   ⟹   NP_001316577
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329649   ⟹   NP_001316578
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329650   ⟹   NP_001316579
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329651   ⟹   NP_001316580
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329652   ⟹   NP_001316581
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329653   ⟹   NP_001316582
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329654   ⟹   NP_001316583
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329655   ⟹   NP_001316584
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329656   ⟹   NP_001316585
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329657   ⟹   NP_001316586
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329658   ⟹   NP_001316587
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329659   ⟹   NP_001316588
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329660   ⟹   NP_001316589
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329661   ⟹   NP_001316590
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329662   ⟹   NP_001316591
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329663   ⟹   NP_001316592
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001329664   ⟹   NP_001316593
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NM_145011   ⟹   NP_659448
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
GRCh371038,238,500 - 38,265,584 (-)NCBI
Build 361038,278,801 - 38,305,459 (-)NCBI Archive
Celera1038,009,589 - 38,036,247 (-)RGD
HuRef1037,946,651 - 37,973,307 (-)ENTREZGENE
CHM1_11038,239,278 - 38,265,887 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138062
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138063
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138064
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138065
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138066
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138067
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138068
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Sequence:
RefSeq Acc Id: NR_138069
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,975,980 (-)NCBI
T2T-CHM13v2.01037,993,572 - 38,019,981 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047424716   ⟹   XP_047280672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,949,573 - 37,976,647 (-)NCBI
RefSeq Acc Id: XM_054365011   ⟹   XP_054220986
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01037,993,572 - 38,020,648 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001316576 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316577 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316578 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316579 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316580 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316581 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316582 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316583 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316584 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316585 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316586 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316587 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316588 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316589 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316590 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316591 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316592 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316593 (Get FASTA)   NCBI Sequence Viewer  
  NP_659448 (Get FASTA)   NCBI Sequence Viewer  
  XP_047280672 (Get FASTA)   NCBI Sequence Viewer  
  XP_054220986 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH36038 (Get FASTA)   NCBI Sequence Viewer  
  BAB71187 (Get FASTA)   NCBI Sequence Viewer  
  CAA36576 (Get FASTA)   NCBI Sequence Viewer  
  CAD36955 (Get FASTA)   NCBI Sequence Viewer  
  CAD38845 (Get FASTA)   NCBI Sequence Viewer  
  EAW85895 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000302222
  ENSP00000302222.7
GenBank Protein P17030 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_659448   ⟸   NM_145011
- Peptide Label: isoform b
- UniProtKB: Q8NDD6 (UniProtKB/Swiss-Prot),   Q8IYE3 (UniProtKB/Swiss-Prot),   A9Z1X5 (UniProtKB/Swiss-Prot),   Q96MU2 (UniProtKB/Swiss-Prot),   P17030 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316581   ⟸   NM_001329652
- Peptide Label: isoform b
- UniProtKB: Q8NDD6 (UniProtKB/Swiss-Prot),   Q8IYE3 (UniProtKB/Swiss-Prot),   A9Z1X5 (UniProtKB/Swiss-Prot),   Q96MU2 (UniProtKB/Swiss-Prot),   P17030 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316583   ⟸   NM_001329654
- Peptide Label: isoform b
- UniProtKB: Q8NDD6 (UniProtKB/Swiss-Prot),   Q8IYE3 (UniProtKB/Swiss-Prot),   A9Z1X5 (UniProtKB/Swiss-Prot),   Q96MU2 (UniProtKB/Swiss-Prot),   P17030 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316584   ⟸   NM_001329655
- Peptide Label: isoform c
- Sequence:
RefSeq Acc Id: NP_001316586   ⟸   NM_001329657
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316587   ⟸   NM_001329658
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316578   ⟸   NM_001329649
- Peptide Label: isoform a
- Sequence:
RefSeq Acc Id: NP_001316589   ⟸   NM_001329660
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316580   ⟸   NM_001329651
- Peptide Label: isoform b
- UniProtKB: Q8NDD6 (UniProtKB/Swiss-Prot),   Q8IYE3 (UniProtKB/Swiss-Prot),   A9Z1X5 (UniProtKB/Swiss-Prot),   Q96MU2 (UniProtKB/Swiss-Prot),   P17030 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316588   ⟸   NM_001329659
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316585   ⟸   NM_001329656
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316577   ⟸   NM_001329648
- Peptide Label: isoform a
- Sequence:
RefSeq Acc Id: NP_001316590   ⟸   NM_001329661
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316579   ⟸   NM_001329650
- Peptide Label: isoform b
- UniProtKB: Q8NDD6 (UniProtKB/Swiss-Prot),   Q8IYE3 (UniProtKB/Swiss-Prot),   A9Z1X5 (UniProtKB/Swiss-Prot),   Q96MU2 (UniProtKB/Swiss-Prot),   P17030 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316592   ⟸   NM_001329663
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316591   ⟸   NM_001329662
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: NP_001316576   ⟸   NM_001329647
- Peptide Label: isoform a
- Sequence:
RefSeq Acc Id: NP_001316582   ⟸   NM_001329653
- Peptide Label: isoform b
- UniProtKB: Q8NDD6 (UniProtKB/Swiss-Prot),   Q8IYE3 (UniProtKB/Swiss-Prot),   A9Z1X5 (UniProtKB/Swiss-Prot),   Q96MU2 (UniProtKB/Swiss-Prot),   P17030 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316593   ⟸   NM_001329664
- Peptide Label: isoform d
- Sequence:
RefSeq Acc Id: ENSP00000302222   ⟸   ENST00000302609
RefSeq Acc Id: XP_047280672   ⟸   XM_047424716
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054220986   ⟸   XM_054365011
- Peptide Label: isoform X1
Protein Domains
KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P17030-F1-model_v2 AlphaFold P17030 1-456 view protein structure

Promoters
RGD ID:7217367
Promoter ID:EPDNEW_H14429
Type:initiation region
Name:ZNF25_2
Description:zinc finger protein 25
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14431  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,976,613 - 37,976,673EPDNEW
RGD ID:7217371
Promoter ID:EPDNEW_H14431
Type:initiation region
Name:ZNF25_1
Description:zinc finger protein 25
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14429  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381037,976,647 - 37,976,707EPDNEW
RGD ID:6788141
Promoter ID:HG_KWN:9183
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000051214,   OTTHUMT00000051216,   OTTHUMT00000331602,   UC001IZF.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361038,304,586 - 38,305,782 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13043 AgrOrtholog
COSMIC ZNF25 COSMIC
Ensembl Genes ENSG00000175395 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000302609 ENTREZGENE
  ENST00000302609.8 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot
  Classic Zinc Finger UniProtKB/Swiss-Prot
GTEx ENSG00000175395 GTEx
HGNC ID HGNC:13043 ENTREZGENE
Human Proteome Map ZNF25 Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot
  KRAB_dom_sf UniProtKB/Swiss-Prot
  Znf_C2H2_sf UniProtKB/Swiss-Prot
  Znf_C2H2_type UniProtKB/Swiss-Prot
KEGG Report hsa:219749 UniProtKB/Swiss-Prot
NCBI Gene 219749 ENTREZGENE
OMIM 194528 OMIM
PANTHER NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED UniProtKB/Swiss-Prot
  ZINC FINGER AND BTB DOMAIN-CONTAINING UniProtKB/Swiss-Prot
Pfam KRAB UniProtKB/Swiss-Prot
  zf-C2H2 UniProtKB/Swiss-Prot
PharmGKB PA37621 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot
SMART KRAB UniProtKB/Swiss-Prot
  ZnF_C2H2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot
  SSF57667 UniProtKB/Swiss-Prot
UniProt A9Z1X5 ENTREZGENE
  P17030 ENTREZGENE
  Q8IYE3 ENTREZGENE
  Q8NDD6 ENTREZGENE
  Q96MU2 ENTREZGENE
  ZNF25_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A9Z1X5 UniProtKB/Swiss-Prot
  Q8IYE3 UniProtKB/Swiss-Prot
  Q8NDD6 UniProtKB/Swiss-Prot
  Q96MU2 UniProtKB/Swiss-Prot