RPS17P2 (ribosomal protein S17 pseudogene 2) - Rat Genome Database

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Gene: RPS17P2 (ribosomal protein S17 pseudogene 2) Homo sapiens
Analyze
Symbol: RPS17P2
Name: ribosomal protein S17 pseudogene 2
RGD ID: 1344055
HGNC Page HGNC:10398
Description: INTERACTS WITH N-acetyl-1,4-benzoquinone imine
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: RPS17_5_604; RPS17A; RPS17L1
Related Functional Gene: RPS17  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385116,716,218 - 116,716,696 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5116,716,243 - 116,716,650 (+)EnsemblGRCh38hg38GRCh38
GRCh375116,051,914 - 116,052,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365116,079,716 - 116,080,408 (+)NCBINCBI36Build 36hg18NCBI36
Celera5112,001,413 - 112,001,891 (+)NCBICelera
Cytogenetic Map5q23.1NCBI
HuRef5111,232,934 - 111,233,412 (+)NCBIHuRef
CHM1_15115,484,517 - 115,484,995 (+)NCBICHM1_1
T2T-CHM13v2.05117,228,311 - 117,228,789 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:3240863   PMID:3459254   PMID:19123937  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:68
Interacting mature miRNAs:68
Transcripts:ENST00000359659, ENST00000461663
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
REN76280  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,435,606 - 32,435,856UniSTSGRCh37
GRCh375116,052,069 - 116,052,319UniSTSGRCh37
Build 365116,079,968 - 116,080,218RGDNCBI36
Celera2216,236,086 - 16,236,336UniSTS
Celera5112,001,568 - 112,001,818RGD
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map5q23.1UniSTS
HuRef2215,391,329 - 15,391,579UniSTS
HuRef5111,233,089 - 111,233,339UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 135 58 86 9 123 6 362 53 592 48 152 167 3 103 220
Below cutoff 1295 1228 879 245 466 156 2374 1181 2198 166 716 801 89 743 1538 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000461663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5116,716,243 - 116,716,650 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RPS17P2 COSMIC
Ensembl Genes ENSG00000197575 Ensembl, ENTREZGENE
GTEx ENSG00000197575 GTEx
HGNC ID HGNC:10398 ENTREZGENE
Human Proteome Map RPS17P2 Human Proteome Map
NCBI Gene 6219 ENTREZGENE
PharmGKB PA34799 PharmGKB