RAB11A (RAB11A, member RAS oncogene family) - Rat Genome Database

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Gene: RAB11A (RAB11A, member RAS oncogene family) Homo sapiens
Analyze
Symbol: RAB11A
Name: RAB11A, member RAS oncogene family
RGD ID: 1343833
HGNC Page HGNC:9760
Description: Enables GTPase activity; cytoskeletal protein binding activity; and dynein light intermediate chain binding activity. Involved in several processes, including mitotic sister chromatid segregation; protein localization to membrane; and regulation of intracellular transport. Located in several cellular components, including Golgi apparatus; cytoplasmic vesicle; and microtubule cytoskeleton. Part of protein-containing complex. Is active in glutamatergic synapse and postsynaptic recycling endosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MGC1490; RAB 11A, member oncogene family; rab-11; ras-related protein Rab-11A; YL8
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: RAB11AP1   RAB11AP2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,869,491 - 65,891,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,726,054 - 65,891,989 (+)EnsemblGRCh38hg38GRCh38
GRCh371566,161,829 - 66,184,327 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,948,850 - 63,968,846 (+)NCBINCBI36Build 36hg18NCBI36
Build 341563,948,849 - 63,968,846NCBI
Celera1543,039,718 - 43,059,714 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,986,532 - 43,009,063 (+)NCBIHuRef
CHM1_11566,279,669 - 66,302,201 (+)NCBICHM1_1
T2T-CHM13v2.01563,678,915 - 63,701,413 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
amyloid-beta clearance by transcytosis  (IGI)
astral microtubule organization  (IMP)
constitutive secretory pathway  (IEA)
early endosome to recycling endosome transport  (IMP)
establishment of protein localization to membrane  (IMP)
establishment of protein localization to organelle  (IMP)
establishment of vesicle localization  (IMP)
exocytosis  (IBA,IEA)
exosomal secretion  (IMP)
Golgi to plasma membrane protein transport  (IC)
melanosome transport  (IBA,IEA,ISS)
mitotic metaphase chromosome alignment  (IMP)
mitotic spindle assembly  (IMP)
multivesicular body assembly  (IMP)
neuron projection development  (IMP)
neurotransmitter receptor transport, endosome to postsynaptic membrane  (IBA,IEA)
plasma membrane to endosome transport  (NAS)
positive regulation of epithelial cell migration  (IMP)
positive regulation of G2/M transition of mitotic cell cycle  (IMP)
positive regulation of mitotic cytokinetic process  (IDA)
positive regulation of protein localization to plasma membrane  (ISO)
protein localization to cell surface  (IEA,ISO)
protein localization to cilium  (IDA)
protein localization to plasma membrane  (IDA)
protein transmembrane transport  (IEA,ISO)
protein transport  (IEA)
regulated exocytosis  (IEA)
regulation of cilium assembly  (IDA)
regulation of cytokinesis  (IMP)
regulation of early endosome to recycling endosome transport  (IDA)
regulation of endocytic recycling  (IDA)
regulation of long-term neuronal synaptic plasticity  (ISO)
regulation of multivesicular body size  (IMP)
regulation of protein localization to centrosome  (IDA)
regulation of protein transport  (ISO)
regulation of vesicle-mediated transport  (IDA,IMP)
vesicle-mediated transport  (IDA,IEA,IMP)
vesicle-mediated transport in synapse  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. Physiology and pathophysiology of the vasopressin-regulated renal water reabsorption. Boone M and Deen PM, Pflugers Arch. 2008 Sep;456(6):1005-24. Epub 2008 Apr 23.
2. Rab proteins in endocytosis and Glut4 trafficking. Kaddai V, etal., Acta Physiol (Oxf). 2008 Jan;192(1):75-88.
3. Overview of macroautophagy regulation in mammalian cells. Mehrpour M, etal., Cell Res. 2010 Jul;20(7):748-62. Epub 2010 Jun 15.
4. A Role of myosin Vb and Rab11-FIP2 in the aquaporin-2 shuttle. Nedvetsky PI, etal., Traffic. 2007 Feb;8(2):110-23. Epub 2006 Dec 6.
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. GLUT4 translocation: the last 200 nanometers. Watson RT and Pessin JE, Cell Signal. 2007 Nov;19(11):2209-17. Epub 2007 Jun 21.
9. Insulin action on glucose transporters through molecular switches, tracks and tethers. Zaid H, etal., Biochem J. 2008 Jul 15;413(2):201-15.
Additional References at PubMed
PMID:1704119   PMID:1711847   PMID:9662449   PMID:9719562   PMID:10077598   PMID:10369872   PMID:10464283   PMID:10512627   PMID:10747849   PMID:11163216   PMID:11408590   PMID:11481332  
PMID:11495908   PMID:11786538   PMID:11994279   PMID:12145319   PMID:12435603   PMID:12470645   PMID:12477932   PMID:12540381   PMID:12554740   PMID:14699104   PMID:14702039   PMID:15134434  
PMID:15173169   PMID:15181150   PMID:15188492   PMID:15190120   PMID:15229288   PMID:15280022   PMID:15304524   PMID:15326289   PMID:15471887   PMID:15489334   PMID:15569681   PMID:15601896  
PMID:15604093   PMID:15634213   PMID:15837192   PMID:16126723   PMID:16148947   PMID:16189514   PMID:16214890   PMID:16354686   PMID:16473307   PMID:16473632   PMID:16473633   PMID:16730941  
PMID:16734419   PMID:16791210   PMID:16905101   PMID:17007872   PMID:17030804   PMID:17043677   PMID:17082457   PMID:17157409   PMID:17229837   PMID:17255364   PMID:17353931   PMID:17426287  
PMID:17462998   PMID:17476295   PMID:17507647   PMID:17538027   PMID:17540176   PMID:17562788   PMID:17626244   PMID:17854769   PMID:18311135   PMID:18329369   PMID:18406652   PMID:18511905  
PMID:18550774   PMID:18570918   PMID:18685082   PMID:18701709   PMID:18832025   PMID:18843107   PMID:19009530   PMID:19193894   PMID:19322201   PMID:19327867   PMID:19398555   PMID:19460752  
PMID:19542231   PMID:19641023   PMID:19738201   PMID:19752198   PMID:19797056   PMID:19996123   PMID:20026645   PMID:20308558   PMID:20346379   PMID:20357086   PMID:20622010   PMID:20727405  
PMID:20877624   PMID:20933442   PMID:20943774   PMID:21255211   PMID:21273506   PMID:21282656   PMID:21307188   PMID:21525351   PMID:21586748   PMID:21653824   PMID:21789505   PMID:21795389  
PMID:21873635   PMID:21976701   PMID:21988832   PMID:22303009   PMID:22304920   PMID:22404213   PMID:22420646   PMID:22537031   PMID:22613832   PMID:22613965   PMID:22685325   PMID:22939629  
PMID:22981775   PMID:23176490   PMID:23283983   PMID:23454239   PMID:23533145   PMID:23535298   PMID:23589291   PMID:23640058   PMID:23733193   PMID:24006491   PMID:24056041   PMID:24163434  
PMID:24190883   PMID:24302731   PMID:24373285   PMID:24413175   PMID:24561039   PMID:24591568   PMID:24648492   PMID:24830293   PMID:24876499   PMID:24892806   PMID:24920821   PMID:24962317  
PMID:25092884   PMID:25117932   PMID:25299335   PMID:25446083   PMID:25556234   PMID:25673875   PMID:25673879   PMID:25849865   PMID:25921289   PMID:26005850   PMID:26041286   PMID:26169354  
PMID:26258637   PMID:26264872   PMID:26344197   PMID:26355680   PMID:26378159   PMID:26399276   PMID:26496610   PMID:26553929   PMID:26565907   PMID:26635365   PMID:26637356   PMID:26663395  
PMID:26756197   PMID:26879265   PMID:26941330   PMID:27154205   PMID:27375898   PMID:27432908   PMID:27684187   PMID:27696383   PMID:27875067   PMID:28017832   PMID:28302793   PMID:28468127  
PMID:28514442   PMID:28515276   PMID:28724771   PMID:28739266   PMID:28922401   PMID:28939769   PMID:29123131   PMID:29128334   PMID:29507755   PMID:29568061   PMID:29634932   PMID:29772958  
PMID:29845934   PMID:29997244   PMID:30217979   PMID:30446510   PMID:30575818   PMID:30597006   PMID:30679637   PMID:30808710   PMID:30948266   PMID:30981667   PMID:31091453   PMID:31180492  
PMID:31182584   PMID:31196199   PMID:31204173   PMID:31213539   PMID:31239271   PMID:31308374   PMID:31527615   PMID:31536960   PMID:31558725   PMID:31558873   PMID:31588230   PMID:31871319  
PMID:31911620   PMID:31950832   PMID:32296183   PMID:32707033   PMID:32744247   PMID:32788342   PMID:32814053   PMID:32825931   PMID:32860953   PMID:32913203   PMID:32941674   PMID:33024031  
PMID:33239621   PMID:33326197   PMID:33524390   PMID:33957083   PMID:33961781   PMID:34058200   PMID:34079125   PMID:34128958   PMID:34363324   PMID:34709727   PMID:34732716   PMID:34747980  
PMID:35182466   PMID:35271311   PMID:35384245   PMID:35562734   PMID:35644860   PMID:35662671   PMID:35789415   PMID:35844135   PMID:35944360   PMID:36042349   PMID:36125654   PMID:36215168  
PMID:36225252   PMID:36327817   PMID:36464817   PMID:36517590   PMID:36584595   PMID:36590901   PMID:36604604   PMID:36610398   PMID:36724073   PMID:37232246   PMID:37689310   PMID:38072191  
PMID:38113892   PMID:38117590  


Genomics

Comparative Map Data
RAB11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381565,869,491 - 65,891,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1565,726,054 - 65,891,989 (+)EnsemblGRCh38hg38GRCh38
GRCh371566,161,829 - 66,184,327 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361563,948,850 - 63,968,846 (+)NCBINCBI36Build 36hg18NCBI36
Build 341563,948,849 - 63,968,846NCBI
Celera1543,039,718 - 43,059,714 (+)NCBICelera
Cytogenetic Map15q22.31NCBI
HuRef1542,986,532 - 43,009,063 (+)NCBIHuRef
CHM1_11566,279,669 - 66,302,201 (+)NCBICHM1_1
T2T-CHM13v2.01563,678,915 - 63,701,413 (+)NCBIT2T-CHM13v2.0
Rab11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39964,622,582 - 64,645,038 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl964,622,581 - 64,645,040 (-)EnsemblGRCm39 Ensembl
GRCm38964,715,300 - 64,737,756 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl964,715,299 - 64,737,758 (-)EnsemblGRCm38mm10GRCm38
MGSCv37964,563,107 - 64,585,563 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36964,514,239 - 64,535,762 (-)NCBIMGSCv36mm8
Celera961,945,730 - 61,968,176 (-)NCBICelera
Cytogenetic Map9CNCBI
cM Map934.87NCBI
Rab11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8874,118,922 - 74,141,760 (-)NCBIGRCr8
mRatBN7.2865,223,698 - 65,246,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl865,222,949 - 65,246,525 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx870,737,827 - 70,760,586 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0869,010,409 - 69,033,168 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0866,880,396 - 66,903,155 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0870,192,975 - 70,215,719 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl870,192,975 - 70,215,719 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0869,896,587 - 69,919,171 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4868,931,925 - 68,979,514 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1868,950,978 - 68,998,568 (-)NCBI
Celera864,627,832 - 64,650,008 (-)NCBICelera
Cytogenetic Map8q24NCBI
Rab11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554509,638,761 - 9,656,603 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554509,638,761 - 9,656,291 (-)NCBIChiLan1.0ChiLan1.0
RAB11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21655,116,127 - 55,138,190 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11559,288,585 - 59,308,848 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01544,810,880 - 44,833,438 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11563,088,084 - 63,108,077 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1563,088,084 - 63,108,077 (+)Ensemblpanpan1.1panPan2
RAB11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13030,200,831 - 30,218,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3030,200,831 - 30,218,411 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3030,128,206 - 30,145,797 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03030,390,944 - 30,408,531 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3030,390,701 - 30,412,317 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13030,320,666 - 30,338,234 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03030,383,756 - 30,401,404 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03030,624,755 - 30,642,365 (+)NCBIUU_Cfam_GSD_1.0
Rab11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640108,241,149 - 108,264,137 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647126,088,852 - 26,113,433 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647126,089,216 - 26,111,245 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1163,858,123 - 163,891,527 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11163,858,254 - 163,887,741 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21181,463,316 - 181,492,724 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12617,682,629 - 17,702,325 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2617,682,874 - 17,702,309 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048123,739,221 - 123,760,752 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247816,699,926 - 6,718,545 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247816,699,926 - 6,718,020 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RAB11A
56 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q22.31(chr15:64448836-65975439)x3 copy number gain See cases [RCV000052344] Chr15:64448836..65975439 [GRCh38]
Chr15:64741035..66267777 [GRCh37]
Chr15:62528088..64054831 [NCBI36]
Chr15:15q22.31
pathogenic
GRCh38/hg38 15q22.2-26.3(chr15:59828460-101920998)x3 copy number gain See cases [RCV000142915] Chr15:59828460..101920998 [GRCh38]
Chr15:60120659..102461201 [GRCh37]
Chr15:57907951..100278724 [NCBI36]
Chr15:15q22.2-26.3
pathogenic
GRCh37/hg19 15q22.31-26.3(chr15:64637227-102509910)x3 copy number gain See cases [RCV000240602] Chr15:64637227..102509910 [GRCh37]
Chr15:15q22.31-26.3
pathogenic
NM_004663.5(RAB11A):c.122A>G (p.Lys41Arg) single nucleotide variant not provided [RCV003239012] Chr15:65877413 [GRCh38]
Chr15:66169751 [GRCh37]
Chr15:15q22.31
uncertain significance
GRCh37/hg19 15q22.1-26.3(chr15:59297293-102480888)x3 copy number gain not provided [RCV000415836] Chr15:59297293..102480888 [GRCh37]
Chr15:15q22.1-26.3
likely pathogenic
GRCh37/hg19 15q15.1-26.3(chr15:41745084-102354798)x4 copy number gain See cases [RCV000447123] Chr15:41745084..102354798 [GRCh37]
Chr15:15q15.1-26.3
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3
pathogenic
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3
pathogenic
Single allele deletion Nemaline myopathy 6 [RCV000677940] Chr15:63414894..66439797 [GRCh37]
Chr15:15q22.2-22.31
likely pathogenic
GRCh37/hg19 15q22.31(chr15:65953002-66168534)x1 copy number loss not provided [RCV000738805] Chr15:65953002..66168534 [GRCh37]
Chr15:15q22.31
benign
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3
pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3
pathogenic
NM_004663.5(RAB11A):c.237-20A>G single nucleotide variant not provided [RCV001689012] Chr15:65877742 [GRCh38]
Chr15:66170080 [GRCh37]
Chr15:15q22.31
benign
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1
uncertain significance
NC_000015.10:g.65867479G>C single nucleotide variant not provided [RCV001357194] Chr15:65867479 [GRCh38]
Chr15:66159817 [GRCh37]
Chr15:15q22.31
uncertain significance
NC_000015.9:g.(?_66161924)_(69018313_?)dup duplication Neuronal ceroid lipofuscinosis [RCV003120802]|not provided [RCV002045713] Chr15:66161924..69018313 [GRCh37]
Chr15:15q22.31-23
uncertain significance|no classifications from unflagged records
NM_004663.5(RAB11A):c.575G>A (p.Ser192Asn) single nucleotide variant not provided [RCV002003898] Chr15:65887764 [GRCh38]
Chr15:66180102 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.97C>T (p.Arg33Ter) single nucleotide variant not provided [RCV001864777] Chr15:65877388 [GRCh38]
Chr15:66169726 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.294A>G (p.Thr98=) single nucleotide variant not provided [RCV002016086] Chr15:65877819 [GRCh38]
Chr15:66170157 [GRCh37]
Chr15:15q22.31
likely benign|uncertain significance
NM_004663.5(RAB11A):c.610A>G (p.Thr204Ala) single nucleotide variant not provided [RCV002032908] Chr15:65887799 [GRCh38]
Chr15:66180137 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.444G>A (p.Leu148=) single nucleotide variant not provided [RCV002073726] Chr15:65879684 [GRCh38]
Chr15:66172022 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.431-16T>C single nucleotide variant not provided [RCV002129152] Chr15:65879655 [GRCh38]
Chr15:66171993 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.40+18C>G single nucleotide variant not provided [RCV002192652] Chr15:65869643 [GRCh38]
Chr15:66161981 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.41-19G>A single nucleotide variant not provided [RCV002205219] Chr15:65877313 [GRCh38]
Chr15:66169651 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.555C>T (p.Arg185=) single nucleotide variant not provided [RCV002146321] Chr15:65887744 [GRCh38]
Chr15:66180082 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.129C>G (p.Thr43=) single nucleotide variant not provided [RCV002092405] Chr15:65877420 [GRCh38]
Chr15:66169758 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.585G>A (p.Val195=) single nucleotide variant not provided [RCV002104625] Chr15:65887774 [GRCh38]
Chr15:66180112 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.237-11T>C single nucleotide variant not provided [RCV002106974] Chr15:65877751 [GRCh38]
Chr15:66170089 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.294A>T (p.Thr98=) single nucleotide variant not provided [RCV002076663] Chr15:65877819 [GRCh38]
Chr15:66170157 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.384A>G (p.Leu128=) single nucleotide variant not provided [RCV002117443] Chr15:65877909 [GRCh38]
Chr15:66170247 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.511+19G>C single nucleotide variant not provided [RCV002206899] Chr15:65879770 [GRCh38]
Chr15:66172108 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.12C>A (p.Arg4=) single nucleotide variant not provided [RCV002097210] Chr15:65869597 [GRCh38]
Chr15:66161935 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.236+14T>C single nucleotide variant not provided [RCV002196032] Chr15:65877541 [GRCh38]
Chr15:66169879 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.591T>G (p.Pro197=) single nucleotide variant not provided [RCV002115831] Chr15:65887780 [GRCh38]
Chr15:66180118 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.265T>C (p.Leu89=) single nucleotide variant not provided [RCV002107812] Chr15:65877790 [GRCh38]
Chr15:66170128 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.462G>A (p.Ser154=) single nucleotide variant not provided [RCV002131823] Chr15:65879702 [GRCh38]
Chr15:66172040 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.375G>A (p.Lys125=) single nucleotide variant not provided [RCV002085542] Chr15:65877900 [GRCh38]
Chr15:66170238 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.282T>A (p.Ala94=) single nucleotide variant not provided [RCV002115980] Chr15:65877807 [GRCh38]
Chr15:66170145 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.511+20A>G single nucleotide variant not provided [RCV002128373] Chr15:65879771 [GRCh38]
Chr15:66172109 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.488C>G (p.Ala163Gly) single nucleotide variant Inborn genetic diseases [RCV002551290]|not provided [RCV002077860] Chr15:65879728 [GRCh38]
Chr15:66172066 [GRCh37]
Chr15:15q22.31
likely benign|uncertain significance
NM_004663.5(RAB11A):c.574A>C (p.Ser192Arg) single nucleotide variant not provided [RCV002151289] Chr15:65887763 [GRCh38]
Chr15:66180101 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.363T>C (p.Leu121=) single nucleotide variant not provided [RCV002075994] Chr15:65877888 [GRCh38]
Chr15:66170226 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.431-14G>A single nucleotide variant not provided [RCV002177204] Chr15:65879657 [GRCh38]
Chr15:66171995 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.512-20T>G single nucleotide variant not provided [RCV002102160] Chr15:65887681 [GRCh38]
Chr15:66180019 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.511+10G>A single nucleotide variant not provided [RCV002135921] Chr15:65879761 [GRCh38]
Chr15:66172099 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.33C>T (p.Leu11=) single nucleotide variant not provided [RCV002140423] Chr15:65869618 [GRCh38]
Chr15:66161956 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.511+18A>C single nucleotide variant not provided [RCV002153923] Chr15:65879769 [GRCh38]
Chr15:66172107 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.210A>G (p.Gln70=) single nucleotide variant not provided [RCV002203468] Chr15:65877501 [GRCh38]
Chr15:66169839 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.431-5del deletion not provided [RCV002123383] Chr15:65879663 [GRCh38]
Chr15:66172001 [GRCh37]
Chr15:15q22.31
benign
NM_004663.5(RAB11A):c.335A>G (p.His112Arg) single nucleotide variant EEG abnormality [RCV003128308] Chr15:65877860 [GRCh38]
Chr15:66170198 [GRCh37]
Chr15:15q22.31
likely pathogenic
NM_004663.5(RAB11A):c.10C>T (p.Arg4Cys) single nucleotide variant not provided [RCV002278994] Chr15:65869595 [GRCh38]
Chr15:66161933 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.200C>T (p.Thr67Ile) single nucleotide variant not provided [RCV002287138] Chr15:65877491 [GRCh38]
Chr15:66169829 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.334C>G (p.His112Asp) single nucleotide variant not provided [RCV003231837] Chr15:65877859 [GRCh38]
Chr15:66170197 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.430G>C (p.Glu144Gln) single nucleotide variant not provided [RCV002306027] Chr15:65877955 [GRCh38]
Chr15:66170293 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.237-3C>T single nucleotide variant not provided [RCV003013971] Chr15:65877759 [GRCh38]
Chr15:66170097 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.33C>A (p.Leu11=) single nucleotide variant not provided [RCV002754909] Chr15:65869618 [GRCh38]
Chr15:66161956 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.334C>A (p.His112Asn) single nucleotide variant not provided [RCV002867228] Chr15:65877859 [GRCh38]
Chr15:66170197 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.456A>G (p.Glu152=) single nucleotide variant not provided [RCV002889572] Chr15:65879696 [GRCh38]
Chr15:66172034 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.410A>T (p.Asp137Val) single nucleotide variant not provided [RCV002509989] Chr15:65877935 [GRCh38]
Chr15:66170273 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.236+7C>T single nucleotide variant not provided [RCV003035970] Chr15:65877534 [GRCh38]
Chr15:66169872 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.201A>C (p.Thr67=) single nucleotide variant not provided [RCV003036150] Chr15:65877492 [GRCh38]
Chr15:66169830 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.291C>T (p.Leu97=) single nucleotide variant not provided [RCV002957285] Chr15:65877816 [GRCh38]
Chr15:66170154 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.598G>A (p.Val200Ile) single nucleotide variant Inborn genetic diseases [RCV002696603] Chr15:65887787 [GRCh38]
Chr15:66180125 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.650A>G (p.Ter217=) single nucleotide variant not provided [RCV002765352] Chr15:65887839 [GRCh38]
Chr15:66180177 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.581A>G (p.Asn194Ser) single nucleotide variant not provided [RCV002651101] Chr15:65887770 [GRCh38]
Chr15:66180108 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.236+19A>C single nucleotide variant not provided [RCV003031170] Chr15:65877546 [GRCh38]
Chr15:66169884 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.617A>G (p.Asn206Ser) single nucleotide variant not provided [RCV003046449] Chr15:65887806 [GRCh38]
Chr15:66180144 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.517T>C (p.Tyr173His) single nucleotide variant not provided [RCV003047343] Chr15:65887706 [GRCh38]
Chr15:66180044 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.431-6C>T single nucleotide variant not provided [RCV003030996] Chr15:65879665 [GRCh38]
Chr15:66172003 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.138A>C (p.Val46=) single nucleotide variant not provided [RCV002583689] Chr15:65877429 [GRCh38]
Chr15:66169767 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.540A>C (p.Gln180His) single nucleotide variant not provided [RCV002814839] Chr15:65887729 [GRCh38]
Chr15:66180067 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.127A>G (p.Thr43Ala) single nucleotide variant not provided [RCV003329851] Chr15:65877418 [GRCh38]
Chr15:66169756 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.461C>T (p.Ser154Leu) single nucleotide variant not provided [RCV003334180] Chr15:65879701 [GRCh38]
Chr15:66172039 [GRCh37]
Chr15:15q22.31
likely pathogenic
NM_004663.5(RAB11A):c.331G>A (p.Asp111Asn) single nucleotide variant Inborn genetic diseases [RCV003363848] Chr15:65877856 [GRCh38]
Chr15:66170194 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.18C>G (p.Asp6Glu) single nucleotide variant not provided [RCV003332861] Chr15:65869603 [GRCh38]
Chr15:66161941 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.421G>A (p.Ala141Thr) single nucleotide variant not provided [RCV003569730] Chr15:65877946 [GRCh38]
Chr15:66170284 [GRCh37]
Chr15:15q22.31
uncertain significance
NM_004663.5(RAB11A):c.165T>C (p.Val55=) single nucleotide variant not provided [RCV003661755] Chr15:65877456 [GRCh38]
Chr15:66169794 [GRCh37]
Chr15:15q22.31
likely benign
NM_004663.5(RAB11A):c.152G>C (p.Arg51Thr) single nucleotide variant not provided [RCV003544079] Chr15:65877443 [GRCh38]
Chr15:66169781 [GRCh37]
Chr15:15q22.31
likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2756
Count of miRNA genes:968
Interacting mature miRNAs:1149
Transcripts:ENST00000261890, ENST00000435304, ENST00000563580, ENST00000564910, ENST00000565075, ENST00000566233, ENST00000567671, ENST00000568850, ENST00000569304, ENST00000569896
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
WI-15108  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,183,128 - 66,183,277UniSTSGRCh37
Build 361563,970,182 - 63,970,331RGDNCBI36
Celera1543,061,050 - 43,061,199RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,007,862 - 43,008,011UniSTS
GeneMap99-GB4 RH Map15231.16UniSTS
Whitehead-RH Map15228.3UniSTS
RH80236  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,180,170 - 66,180,322UniSTSGRCh37
Build 361563,967,224 - 63,967,376RGDNCBI36
Celera1543,058,092 - 43,058,244RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,004,904 - 43,005,056UniSTS
GeneMap99-GB4 RH Map15231.06UniSTS
SHGC-82517  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,183,129 - 66,183,439UniSTSGRCh37
Build 361563,970,183 - 63,970,493RGDNCBI36
Celera1543,061,051 - 43,061,361RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,007,863 - 43,008,173UniSTS
D15S728E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,182,658 - 66,182,743UniSTSGRCh37
GRCh371477,023,805 - 77,024,594UniSTSGRCh37
Build 361563,969,712 - 63,969,797RGDNCBI36
Celera1457,062,502 - 57,063,291UniSTS
Celera1543,060,580 - 43,060,665RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,007,392 - 43,007,477UniSTS
HuRef1457,192,741 - 57,193,530UniSTS
D15S857  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,183,908 - 66,184,042UniSTSGRCh37
Build 361563,970,962 - 63,971,096RGDNCBI36
Celera1543,061,830 - 43,061,964RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,008,642 - 43,008,776UniSTS
WI-17132  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,183,460 - 66,183,586UniSTSGRCh37
Build 361563,970,514 - 63,970,640RGDNCBI36
Celera1543,061,382 - 43,061,508RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,008,194 - 43,008,320UniSTS
GeneMap99-GB4 RH Map15230.25UniSTS
Whitehead-RH Map15228.4UniSTS
RAB11A_474  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,181,170 - 66,181,874UniSTSGRCh37
Build 361563,968,224 - 63,968,928RGDNCBI36
Celera1543,059,092 - 43,059,796RGD
HuRef1543,005,904 - 43,006,608UniSTS
1982  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,181,456 - 66,181,544UniSTSGRCh37
GRCh371566,181,456 - 66,181,542UniSTSGRCh37
Build 361563,968,510 - 63,968,596RGDNCBI36
Celera1543,059,378 - 43,059,466UniSTS
Celera1543,059,378 - 43,059,464RGD
Cytogenetic Map15q22.31UniSTS
GeneMap99-GB4 RH Map15227.0UniSTS
D15S710E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,183,764 - 66,183,876UniSTSGRCh37
Build 361563,970,818 - 63,970,930RGDNCBI36
Celera1543,061,686 - 43,061,798RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,008,498 - 43,008,610UniSTS
GeneMap99-GB4 RH Map15226.54UniSTS
STS-N21208  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,181,498 - 66,181,625UniSTSGRCh37
Build 361563,968,552 - 63,968,679RGDNCBI36
Celera1543,059,420 - 43,059,547RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,006,232 - 43,006,359UniSTS
GeneMap99-GB4 RH Map15236.43UniSTS
D15S913  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,183,632 - 66,183,918UniSTSGRCh37
Build 361563,970,686 - 63,970,972RGDNCBI36
Celera1543,061,554 - 43,061,840RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,008,366 - 43,008,652UniSTS
GeneMap99-GB4 RH Map15231.26UniSTS
Whitehead-RH Map15223.2UniSTS
NCBI RH Map15336.9UniSTS
A008D11  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,184,053 - 66,184,177UniSTSGRCh37
Build 361563,971,107 - 63,971,231RGDNCBI36
Celera1543,061,975 - 43,062,099RGD
Cytogenetic Map15q22.31UniSTS
HuRef1543,008,787 - 43,008,911UniSTS
GeneMap99-GB4 RH Map15231.16UniSTS
RAB11A  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371566,180,135 - 66,180,353UniSTSGRCh37
Build 361563,967,189 - 63,967,407RGDNCBI36
Celera1543,058,057 - 43,058,275RGD
HuRef1543,004,869 - 43,005,087UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
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Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2431 2590 1622 521 1697 363 4273 1989 3586 412 1448 1607 171 1203 2705 4
Low 8 400 104 103 254 102 84 207 147 7 11 6 4 1 1 83 1 2
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001206836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_004663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC084854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF498946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK297549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK311770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI550703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT020151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT020154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR407669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR536493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC300743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X53143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000261890   ⟹   ENSP00000261890
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,869,491 - 65,891,989 (+)Ensembl
RefSeq Acc Id: ENST00000563580
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,792,447 - 65,859,751 (+)Ensembl
RefSeq Acc Id: ENST00000564910   ⟹   ENSP00000455567
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,869,456 - 65,888,247 (+)Ensembl
RefSeq Acc Id: ENST00000565075   ⟹   ENSP00000456638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,869,491 - 65,887,859 (+)Ensembl
RefSeq Acc Id: ENST00000566233   ⟹   ENSP00000454381
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,869,464 - 65,887,736 (+)Ensembl
RefSeq Acc Id: ENST00000567671   ⟹   ENSP00000454673
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,870,013 - 65,887,791 (+)Ensembl
RefSeq Acc Id: ENST00000568850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,792,447 - 65,877,819 (+)Ensembl
RefSeq Acc Id: ENST00000569304
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,726,054 - 65,887,923 (+)Ensembl
RefSeq Acc Id: ENST00000569896   ⟹   ENSP00000456420
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1565,869,541 - 65,888,635 (+)Ensembl
RefSeq Acc Id: NM_001206836   ⟹   NP_001193765
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381565,869,491 - 65,891,989 (+)NCBI
GRCh371566,161,629 - 66,184,329 (+)NCBI
HuRef1542,986,532 - 43,009,063 (+)ENTREZGENE
CHM1_11566,279,669 - 66,302,201 (+)NCBI
T2T-CHM13v2.01563,678,915 - 63,701,413 (+)NCBI
Sequence:
RefSeq Acc Id: NM_004663   ⟹   NP_004654
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381565,869,491 - 65,891,989 (+)NCBI
GRCh371566,161,629 - 66,184,329 (+)NCBI
Build 361563,948,850 - 63,968,846 (+)NCBI Archive
HuRef1542,986,532 - 43,009,063 (+)ENTREZGENE
CHM1_11566,279,669 - 66,302,201 (+)NCBI
T2T-CHM13v2.01563,678,915 - 63,701,413 (+)NCBI
Sequence:
RefSeq Acc Id: NP_004654   ⟸   NM_004663
- Peptide Label: isoform 1
- UniProtKB: Q5TZN9 (UniProtKB/Swiss-Prot),   P24410 (UniProtKB/Swiss-Prot),   B4DT13 (UniProtKB/Swiss-Prot),   B2R4B6 (UniProtKB/Swiss-Prot),   Q9JLX1 (UniProtKB/Swiss-Prot),   P62491 (UniProtKB/Swiss-Prot),   B4DMN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001193765   ⟸   NM_001206836
- Peptide Label: isoform 2
- UniProtKB: H3BMH2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000456420   ⟸   ENST00000569896
RefSeq Acc Id: ENSP00000261890   ⟸   ENST00000261890
RefSeq Acc Id: ENSP00000455567   ⟸   ENST00000564910
RefSeq Acc Id: ENSP00000456638   ⟸   ENST00000565075
RefSeq Acc Id: ENSP00000454381   ⟸   ENST00000566233
RefSeq Acc Id: ENSP00000454673   ⟸   ENST00000567671

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62491-F1-model_v2 AlphaFold P62491 1-216 view protein structure

Promoters
RGD ID:6792542
Promoter ID:HG_KWN:21697
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000256864
Position:
Human AssemblyChrPosition (strand)Source
Build 361563,948,511 - 63,949,011 (+)MPROMDB
RGD ID:7229855
Promoter ID:EPDNEW_H20673
Type:initiation region
Name:RAB11A_1
Description:RAB11A, member RAS oncogene family
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381565,869,491 - 65,869,551EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:9760 AgrOrtholog
COSMIC RAB11A COSMIC
Ensembl Genes ENSG00000103769 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000261890 ENTREZGENE
  ENST00000261890.7 UniProtKB/Swiss-Prot
  ENST00000564910.5 UniProtKB/TrEMBL
  ENST00000565075.5 UniProtKB/TrEMBL
  ENST00000566233.5 UniProtKB/TrEMBL
  ENST00000567671.1 UniProtKB/TrEMBL
  ENST00000569896 ENTREZGENE
  ENST00000569896.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000103769 GTEx
HGNC ID HGNC:9760 ENTREZGENE
Human Proteome Map RAB11A Human Proteome Map
InterPro P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:8766 UniProtKB/Swiss-Prot
NCBI Gene 8766 ENTREZGENE
OMIM 605570 OMIM
PANTHER DRAB11 UniProtKB/TrEMBL
  DRAB11-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-11A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-11B UniProtKB/TrEMBL
Pfam Ras UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA34101 PharmGKB
PRINTS RASTRNSFRMNG UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RAS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RHO UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B2R4B6 ENTREZGENE
  B4DMN1 ENTREZGENE, UniProtKB/TrEMBL
  B4DQU5_HUMAN UniProtKB/TrEMBL
  B4DT13 ENTREZGENE
  H3BMH2 ENTREZGENE, UniProtKB/TrEMBL
  H3BN38_HUMAN UniProtKB/TrEMBL
  H3BSC1_HUMAN UniProtKB/TrEMBL
  P24410 ENTREZGENE
  P62491 ENTREZGENE
  Q5TZN9 ENTREZGENE
  Q9JLX1 ENTREZGENE
  RB11A_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary B2R4B6 UniProtKB/Swiss-Prot
  B4DT13 UniProtKB/Swiss-Prot
  P24410 UniProtKB/Swiss-Prot
  Q5TZN9 UniProtKB/Swiss-Prot
  Q9JLX1 UniProtKB/Swiss-Prot