SLC6A10P (solute carrier family 6 member 10, pseudogene) - Rat Genome Database

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Gene: SLC6A10P (solute carrier family 6 member 10, pseudogene) Homo sapiens
Analyze
Symbol: SLC6A10P
Name: solute carrier family 6 member 10, pseudogene
RGD ID: 1343735
HGNC Page HGNC:11043
Description: INTERACTS WITH 2-hydroxypropanoic acid; 2-methylcholine; acrylamide
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: CT-2; CT2; FLJ43855; similar to sodium- and chloride-dependent creatine transporter; SLC6A10; SLC6A10pA; SLC6A10pB; solute carrier family 6 (neurotransmitter transporter, creatine), member 10
Related Functional Gene: SLC6A8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381632,877,473 - 32,885,142 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1632,877,469 - 32,885,142 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1632,878,706 - 32,885,501 (-)EnsemblGRCh38hg38GRCh38
GRCh371632,888,794 - 32,896,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361632,796,298 - 32,803,964 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map16p11.2NCBI
CHM1_11634,205,056 - 34,212,698 (-)NCBICHM1_1
T2T-CHM13v2.01633,399,529 - 33,407,199 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8661037   PMID:8817324   PMID:9154116   PMID:12477932   PMID:16125675   PMID:24144841   PMID:26311224  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:884
Count of miRNA genes:562
Interacting mature miRNAs:616
Transcripts:ENST00000330048, ENST00000431994, ENST00000561837
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 4 3 3 15 6 4 400 12 4
Low 47 92 27 13 4 12 386 281 46 37 110 75 3 1 232 2
Below cutoff 1065 1164 530 175 427 76 2292 1250 1548 169 429 504 107 394 1523 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000330048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,877,469 - 32,885,142 (-)Ensembl
RefSeq Acc Id: ENST00000431994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,878,706 - 32,885,501 (-)Ensembl
RefSeq Acc Id: ENST00000561837
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1632,882,631 - 32,885,114 (-)Ensembl
RefSeq Acc Id: NR_003083
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381632,877,473 - 32,885,142 (-)NCBI
GRCh371632,888,797 - 32,896,463 (-)RGD
Build 361632,796,298 - 32,803,964 (-)NCBI Archive
HuRef1630,269,165 - 30,271,195 (+)NCBI
CHM1_11634,205,056 - 34,212,698 (-)NCBI
T2T-CHM13v2.01633,399,529 - 33,407,199 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAA96028 (Get FASTA)   NCBI Sequence Viewer  
  BAC86314 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC SLC6A10P COSMIC
Ensembl Genes ENSG00000214617 Ensembl
  ENSG00000290985 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000330048 ENTREZGENE
GTEx ENSG00000214617 GTEx
  ENSG00000290985 GTEx
HGNC ID HGNC:11043 ENTREZGENE
Human Proteome Map SLC6A10P Human Proteome Map
NCBI Gene 386757 ENTREZGENE
PharmGKB PA35906 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-23 SLC6A10P  solute carrier family 6 member 10, pseudogene    solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene  Symbol and/or name change 5135510 APPROVED
2013-07-23 SLC6A10P  solute carrier family 6 (neurotransmitter transporter), member 10, pseudogene    solute carrier family 6 (neurotransmitter transporter, creatine), member 10, pseudogene  Symbol and/or name change 5135510 APPROVED
2011-07-27 SLC6A10P  solute carrier family 6 (neurotransmitter transporter, creatine), member 10, pseudogene  SLC6A10P  solute carrier family 6 (neurotransmitter transporter, creatine), member 10 (pseudogene)  Symbol and/or name change 5135510 APPROVED