TMSB4XP8 (TMSB4X pseudogene 8) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: TMSB4XP8 (TMSB4X pseudogene 8) Homo sapiens
Analyze
Symbol: TMSB4XP8
Name: TMSB4X pseudogene 8
RGD ID: 1343307
HGNC Page HGNC:11885
Description: INTERACTS WITH benzo[a]pyrene; lipopolysaccharide; thapsigargin
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: thymosin beta 4, X-linked pseudogene 8; thymosin beta-4-like protein 3; TMSL3
Related Functional Gene: TMSB4X  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38490,838,496 - 90,839,112 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl490,838,903 - 90,839,037 (-)EnsemblGRCh38hg38GRCh38
GRCh37491,759,647 - 91,760,263 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36491,978,659 - 91,979,292 (-)NCBINCBI36Build 36hg18NCBI36
Build 34492,116,821 - 92,117,443NCBI
Celera489,051,102 - 89,051,735 (-)NCBICelera
Cytogenetic Map4q22.1NCBI
HuRef487,504,241 - 87,504,871 (-)NCBIHuRef
CHM1_1491,736,098 - 91,736,728 (-)NCBICHM1_1
T2T-CHM13v2.0494,163,979 - 94,164,596 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2004759   PMID:19322201   PMID:33961781  


Genomics

Variants

.
Variants in TMSB4XP8
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:187
Interacting mature miRNAs:191
Transcripts:ENST00000380638, ENST00000402089, ENST00000507623
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH91868  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37491,759,802 - 91,759,887UniSTSGRCh37
Build 36491,978,825 - 91,978,910RGDNCBI36
Celera489,051,268 - 89,051,353RGD
Cytogenetic Map5q35UniSTS
Cytogenetic Map4q22.1UniSTS
HuRef487,504,407 - 87,504,492UniSTS
GeneMap99-GB4 RH MapX85.48UniSTS
UniSTS:483400  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3723,665,112 - 3,665,300UniSTSGRCh37
GRCh37491,760,028 - 91,760,216UniSTSGRCh37
Build 3623,642,987 - 3,643,175RGDNCBI36
Celera23,674,115 - 3,674,303RGD
Celera489,051,494 - 89,051,682UniSTS
HuRef487,504,633 - 87,504,821UniSTS
HuRef23,606,689 - 3,606,877UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1
Medium 611 1449 379 170 1342 156 1409 291 826 233 435 748 14 849 840
Low 1717 1497 1244 373 456 225 2631 1646 2783 147 867 685 148 355 1772 1
Below cutoff 24 29 55 44 54 45 147 169 41 15 64 36 2 133

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000402089
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl490,838,903 - 90,839,037 (-)Ensembl
RefSeq Acc Id: NM_183049
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh37491,759,636 - 91,760,269 (-)RGD
Build 36491,978,659 - 91,979,292 (-)NCBI Archive
Celera489,051,102 - 89,051,735 (-)RGD
HuRef487,504,241 - 87,504,874 (-)RGD

Additional Information

Database Acc Id Source(s)
COSMIC TMSB4XP8 COSMIC
Ensembl Genes ENSG00000187653 Ensembl
GTEx ENSG00000187653 GTEx
HGNC ID HGNC:11885 ENTREZGENE
Human Proteome Map TMSB4XP8 Human Proteome Map
NCBI Gene 7117 ENTREZGENE
PharmGKB PA36585 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-01 TMSB4XP8  TMSB4X pseudogene 8    thymosin beta 4, X-linked pseudogene 8  Symbol and/or name change 5135510 APPROVED
2012-03-13 TMSB4XP8  thymosin beta 4, X-linked pseudogene 8  TMSL3  thymosin-like 3  Symbol and/or name change 5135510 APPROVED