RIDA (reactive intermediate imine deaminase A homolog) - Rat Genome Database

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Gene: RIDA (reactive intermediate imine deaminase A homolog) Homo sapiens
Analyze
Symbol: RIDA
Name: reactive intermediate imine deaminase A homolog
RGD ID: 1343199
HGNC Page HGNC
Description: Exhibits deaminase activity and mRNA binding activity. Involved in mRNA catabolic process; mRNA destabilization; and organonitrogen compound catabolic process. Localizes to cytoplasm and nucleus; INTERACTS WITH (-)-epigallocatechin 3-gallate; 2-methylcholine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 14.5 kDa translational inhibitor protein; 2-iminobutanoate/2-iminopropanoate deaminase; heat-responsive protein 12; hp14.5; HRSP12; P14.5; perchloric acid-soluble protein; PSP; reactive intermediate/imine deaminase A homolog; ribonuclease UK114; translation inhibitor L-PSP ribonuclease; translational inhibitor p14.5; translational inhibitor protein p14.5; UK114; UK114 antigen homolog
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: AC110768.1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl898,102,344 - 98,117,171 (-)EnsemblGRCh38hg38GRCh38
GRCh38898,102,344 - 98,117,171 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37899,114,572 - 99,129,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,183,743 - 99,198,594 (-)NCBINCBI36hg18NCBI36
Build 34899,183,742 - 99,198,594NCBI
Celera895,300,431 - 95,315,280 (-)NCBI
Cytogenetic Map8q22.2NCBI
HuRef894,318,228 - 94,332,987 (-)NCBIHuRef
CHM1_1899,155,322 - 99,170,170 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (EXP)
1,1-dichloroethene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (ISO)
2-methylcholine  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (ISO)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP)
amiodarone  (ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
arsenite(3-)  (ISO)
azathioprine  (EXP)
benzbromarone  (ISO)
benzo[a]pyrene  (EXP)
benzo[a]pyrene diol epoxide I  (EXP)
bexarotene  (ISO)
bezafibrate  (ISO)
bisphenol A  (EXP,ISO)
bromobenzene  (ISO)
cadmium dichloride  (EXP)
carbon nanotube  (ISO)
cefaloridine  (ISO)
chloroprene  (ISO)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (EXP)
cyclosporin A  (EXP,ISO)
dibutyl phthalate  (ISO)
dicrotophos  (EXP)
diethylstilbestrol  (ISO)
dioxygen  (EXP,ISO)
ethanol  (ISO)
flavonoids  (ISO)
flutamide  (ISO)
folic acid  (ISO)
furan  (ISO)
gentamycin  (ISO)
glyphosate  (ISO)
isotretinoin  (EXP)
L-ethionine  (ISO)
methapyrilene  (ISO)
metronidazole  (ISO)
monosodium L-glutamate  (ISO)
N-nitrosomorpholine  (ISO)
nefazodone  (ISO)
neomycin  (ISO)
O-methyleugenol  (EXP)
omeprazole  (ISO)
paracetamol  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (ISO)
pirinixic acid  (ISO)
potassium chromate  (EXP)
pregnenolone 16alpha-carbonitrile  (ISO)
Propiverine  (ISO)
silicon dioxide  (EXP)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
sunitinib  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
valproic acid  (EXP)
vancomycin  (ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
cytosol  (IBA,ISO,TAS)
extracellular exosome  (HDA)
mitochondrial matrix  (ISS)
mitochondrion  (IBA)
nucleus  (IDA,ISO)
peroxisome  (IEA,ISO,ISS)

References

Additional References at PubMed
PMID:8530410   PMID:8973653   PMID:9405234   PMID:9463573   PMID:9767104   PMID:10400702   PMID:10961346   PMID:12477932   PMID:14997576   PMID:15489334   PMID:16198412   PMID:18029348  
PMID:18276110   PMID:19056867   PMID:20458337   PMID:20817725   PMID:20877624   PMID:21873635   PMID:21988832   PMID:22094463   PMID:22210626   PMID:22658674   PMID:22939629   PMID:23251661  
PMID:23376485   PMID:25416956   PMID:26344197   PMID:28514442   PMID:30930054   PMID:31103411   PMID:32296183  


Genomics

Comparative Map Data
RIDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl898,102,344 - 98,117,171 (-)EnsemblGRCh38hg38GRCh38
GRCh38898,102,344 - 98,117,171 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37899,114,572 - 99,129,399 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,183,743 - 99,198,594 (-)NCBINCBI36hg18NCBI36
Build 34899,183,742 - 99,198,594NCBI
Celera895,300,431 - 95,315,280 (-)NCBI
Cytogenetic Map8q22.2NCBI
HuRef894,318,228 - 94,332,987 (-)NCBIHuRef
CHM1_1899,155,322 - 99,170,170 (-)NCBICHM1_1
Rida
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,484,168 - 34,495,392 (-)NCBIGRCm39mm39
GRCm39 Ensembl1534,484,167 - 34,495,401 (-)Ensembl
GRCm381534,484,022 - 34,495,246 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,484,021 - 34,495,255 (-)EnsemblGRCm38mm10GRCm38
MGSCv371534,413,777 - 34,425,001 (-)NCBIGRCm37mm9NCBIm37
MGSCv361534,428,726 - 34,439,779 (-)NCBImm8
Celera1535,111,842 - 35,123,094 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
Rida
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2765,691,429 - 65,705,257 (-)NCBI
Rnor_6.0 Ensembl773,256,508 - 73,270,308 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0773,256,506 - 73,270,308 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0773,422,772 - 73,436,372 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4769,930,464 - 69,944,267 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1769,951,193 - 69,964,994 (-)NCBI
Celera762,792,438 - 62,806,237 (-)NCBICelera
Cytogenetic Map7q22NCBI
Rida
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,810,596 - 13,822,982 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541713,810,596 - 13,822,982 (-)NCBIChiLan1.0ChiLan1.0
RIDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1896,923,776 - 96,938,512 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl896,923,776 - 96,938,512 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0894,739,120 - 94,753,934 (-)NCBIMhudiblu_PPA_v0panPan3
RIDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113348,744 - 361,063 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl13348,860 - 361,522 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha13342,375 - 354,474 (-)NCBI
ROS_Cfam_1.013497,322 - 509,637 (-)NCBI
UMICH_Zoey_3.113340,907 - 353,035 (-)NCBI
UNSW_CanFamBas_1.013448,689 - 460,999 (-)NCBI
UU_Cfam_GSD_1.013454,739 - 467,052 (-)NCBI
Rida
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530337,284,388 - 37,295,076 (+)NCBI
SpeTri2.0NW_00493647044,710,481 - 44,721,159 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RIDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,656,319 - 38,670,999 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1438,656,270 - 38,665,863 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,808,015 - 41,817,605 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RIDA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1893,014,986 - 93,031,499 (-)NCBI
Rida
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247635,249,905 - 5,263,994 (-)NCBI

Position Markers
STS-T86935  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37899,130,024 - 99,130,268UniSTSGRCh37
Build 36899,199,200 - 99,199,444RGDNCBI36
Celera895,315,886 - 95,316,130RGD
Cytogenetic Map8q22UniSTS
Cytogenetic Map8q22.1UniSTS
HuRef894,333,593 - 94,333,837UniSTS
GeneMap99-GB4 RH Map8438.0UniSTS
NCBI RH Map81217.2UniSTS
RH66205  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37899,128,160 - 99,128,280UniSTSGRCh37
Build 36899,197,336 - 99,197,456RGDNCBI36
Celera895,314,022 - 95,314,142RGD
Cytogenetic Map8q22UniSTS
Cytogenetic Map8q22.1UniSTS
HuRef894,331,729 - 94,331,849UniSTS
GeneMap99-GB4 RH Map8435.82UniSTS
NCBI RH Map81027.7UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:771
Count of miRNA genes:338
Interacting mature miRNAs:351
Transcripts:ENST00000254878, ENST00000519155, ENST00000519608, ENST00000520507, ENST00000521560, ENST00000522791
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 8 8 8 1
Medium 2104 1542 1555 526 899 456 2974 1776 3632 410 1298 1333 86 1 1145 1850 4 2
Low 335 1335 163 90 940 1 1382 418 102 8 162 280 89 59 938 2
Below cutoff 113 111 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000254878   ⟹   ENSP00000254878
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,102,344 - 98,117,171 (-)Ensembl
RefSeq Acc Id: ENST00000519155
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,113,638 - 98,117,114 (-)Ensembl
RefSeq Acc Id: ENST00000519608
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,102,619 - 98,106,631 (-)Ensembl
RefSeq Acc Id: ENST00000520507   ⟹   ENSP00000428596
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,102,439 - 98,117,110 (-)Ensembl
RefSeq Acc Id: ENST00000521560   ⟹   ENSP00000430482
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,102,464 - 98,117,171 (-)Ensembl
RefSeq Acc Id: ENST00000522791   ⟹   ENSP00000429321
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl898,102,397 - 98,117,159 (-)Ensembl
RefSeq Acc Id: NM_005836   ⟹   NP_005827
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38898,102,344 - 98,117,171 (-)NCBI
GRCh37899,114,567 - 99,129,418 (-)ENTREZGENE
Build 36899,183,743 - 99,198,594 (-)NCBI Archive
HuRef894,318,228 - 94,332,987 (-)ENTREZGENE
CHM1_1899,155,322 - 99,170,170 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_005827   ⟸   NM_005836
- UniProtKB: P52758 (UniProtKB/Swiss-Prot),   A0A024R9H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000254878   ⟸   ENST00000254878
RefSeq Acc Id: ENSP00000428596   ⟸   ENST00000520507
RefSeq Acc Id: ENSP00000430482   ⟸   ENST00000521560
RefSeq Acc Id: ENSP00000429321   ⟸   ENST00000522791

Promoters
RGD ID:7213853
Promoter ID:EPDNEW_H12673
Type:initiation region
Name:RIDA_1
Description:reactive intermediate imine deaminase A homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38898,117,166 - 98,117,226EPDNEW
RGD ID:6806803
Promoter ID:HG_KWN:61776
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001145860,   NM_001145861,   NM_005836,   NM_015029
Position:
Human AssemblyChrPosition (strand)Source
Build 36899,198,561 - 99,199,452 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145049449)x3 copy number gain See cases [RCV000051206] Chr8:241530..145049449 [GRCh38]
Chr8:191530..146274835 [GRCh37]
Chr8:181530..146245639 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:95606052-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053677]|See cases [RCV000053677] Chr8:95606052..145054775 [GRCh38]
Chr8:96618280..146280161 [GRCh37]
Chr8:96687456..146250965 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:244417-145054775)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053604]|See cases [RCV000053604] Chr8:244417..145054775 [GRCh38]
Chr8:194417..146280161 [GRCh37]
Chr8:184417..146250965 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000053602] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p12-q24.3(chr8:31936551-146295771)x3 copy number gain not provided [RCV000848192] Chr8:31936551..146295771 [GRCh37]
Chr8:8p12-q24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:94682154-145068656)x3 copy number gain See cases [RCV000134353] Chr8:94682154..145068656 [GRCh38]
Chr8:95694382..146294042 [GRCh37]
Chr8:95763558..146264846 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q21.3-24.23(chr8:86300584-137022587)x3 copy number gain See cases [RCV000135621] Chr8:86300584..137022587 [GRCh38]
Chr8:87312813..138034830 [GRCh37]
Chr8:87381929..138104012 [NCBI36]
Chr8:8q21.3-24.23
pathogenic|likely pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241605-145054781)x3 copy number gain See cases [RCV000138643] Chr8:241605..145054781 [GRCh38]
Chr8:191605..146280167 [GRCh37]
Chr8:181605..146250971 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.3-24.3(chr8:87931152-145068712)x3 copy number gain See cases [RCV000138551] Chr8:87931152..145068712 [GRCh38]
Chr8:88943380..146294098 [GRCh37]
Chr8:89012496..146264902 [NCBI36]
Chr8:8q21.3-24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:77480050-145068712)x3 copy number gain See cases [RCV000139036] Chr8:77480050..145068712 [GRCh38]
Chr8:78392286..146294098 [GRCh37]
Chr8:78554841..146264902 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8q22.1-24.3(chr8:97382873-145070385)x3 copy number gain See cases [RCV000140447] Chr8:97382873..145070385 [GRCh38]
Chr8:98395101..146295771 [GRCh37]
Chr8:98464277..146266575 [NCBI36]
Chr8:8q22.1-24.3
pathogenic
GRCh38/hg38 8q11.1-24.3(chr8:46031340-139285494)x3 copy number gain See cases [RCV000139539] Chr8:46031340..139285494 [GRCh38]
Chr8:46942962..140297737 [GRCh37]
Chr8:47062127..140366919 [NCBI36]
Chr8:8q11.1-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:208048-145070385)x3 copy number gain See cases [RCV000141808] Chr8:208048..145070385 [GRCh38]
Chr8:158048..146295771 [GRCh37]
Chr8:148048..146266575 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8p21.3-q24.3(chr8:21291522-145070385)x3 copy number gain See cases [RCV000142021] Chr8:21291522..145070385 [GRCh38]
Chr8:21149033..146295771 [GRCh37]
Chr8:21193313..146266575 [NCBI36]
Chr8:8p21.3-q24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:226452-145068712)x3 copy number gain See cases [RCV000142858] Chr8:226452..145068712 [GRCh38]
Chr8:176452..146294098 [GRCh37]
Chr8:166452..146264902 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.13-24.3(chr8:78614077-145054634)x3 copy number gain See cases [RCV000142597] Chr8:78614077..145054634 [GRCh38]
Chr8:79526312..146280020 [GRCh37]
Chr8:79688867..146250824 [NCBI36]
Chr8:8q21.13-24.3
pathogenic
GRCh38/hg38 8p23.3-q24.3(chr8:241530-145054634)x3 copy number gain See cases [RCV000148092] Chr8:241530..145054634 [GRCh38]
Chr8:191530..146280020 [GRCh37]
Chr8:181530..146250824 [NCBI36]
Chr8:8p23.3-q24.3
pathogenic
GRCh38/hg38 8q21.2-24.3(chr8:85765999-145070385)x3 copy number gain See cases [RCV000143659] Chr8:85765999..145070385 [GRCh38]
Chr8:86778228..146295771 [GRCh37]
Chr8:86863079..146266575 [NCBI36]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158991-146280828)x3 copy number gain See cases [RCV000447507] Chr8:158991..146280828 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q22.1-24.3(chr8:98432250-146222672)x4 copy number gain See cases [RCV000448954] Chr8:98432250..146222672 [GRCh37]
Chr8:8q22.1-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771) copy number gain See cases [RCV000510234] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.3-24.3(chr8:93047482-141355635)x3 copy number gain See cases [RCV000511761] Chr8:93047482..141355635 [GRCh37]
Chr8:8q21.3-24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158049-146295771)x3 copy number gain See cases [RCV000511095] Chr8:158049..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841154-146295771)x3 copy number gain See cases [RCV000511002] Chr8:86841154..146295771 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8q21.2-24.3(chr8:86841228-142689874)x3 copy number gain See cases [RCV000510854] Chr8:86841228..142689874 [GRCh37]
Chr8:8q21.2-24.3
pathogenic
GRCh37/hg19 8p23.1-q24.3(chr8:12490999-146295771)x3 copy number gain See cases [RCV000512169] Chr8:12490999..146295771 [GRCh37]
Chr8:8p23.1-q24.3
pathogenic
GRCh37/hg19 8q21.2-23.3(chr8:86841154-116518125)x3 copy number gain not provided [RCV000683045] Chr8:86841154..116518125 [GRCh37]
Chr8:8q21.2-23.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:10213-146293414)x3 copy number gain not provided [RCV000747248] Chr8:10213..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:164984-146293414)x3 copy number gain not provided [RCV000747254] Chr8:164984..146293414 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic
GRCh37/hg19 8p23.3-q24.3(chr8:158048-146295771)x3 copy number gain not provided [RCV000848478] Chr8:158048..146295771 [GRCh37]
Chr8:8p23.3-q24.3
pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:16897 AgrOrtholog
COSMIC RIDA COSMIC
Ensembl Genes ENSG00000132541 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000254878 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000428596 UniProtKB/TrEMBL
  ENSP00000429321 UniProtKB/TrEMBL
  ENSP00000430482 UniProtKB/TrEMBL
Ensembl Transcript ENST00000254878 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000520507 UniProtKB/TrEMBL
  ENST00000521560 UniProtKB/TrEMBL
  ENST00000522791 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000132541 GTEx
HGNC ID HGNC:16897 ENTREZGENE
Human Proteome Map RIDA Human Proteome Map
InterPro RidA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RidA_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RutC-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  YjgF/YER057c/UK114 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:10247 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 10247 ENTREZGENE
OMIM 602487 OMIM
PANTHER PTHR11803 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ribonuc_L-PSP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134890258 PharmGKB
PROSITE UPF0076 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF55298 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs TIGR00004 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024R9H2 ENTREZGENE, UniProtKB/TrEMBL
  E5RIP8_HUMAN UniProtKB/TrEMBL
  H0YB34_HUMAN UniProtKB/TrEMBL
  H0YBX3_HUMAN UniProtKB/TrEMBL
  P52758 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6FHU9 UniProtKB/Swiss-Prot
  Q6IBG0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-26 RIDA  reactive intermediate imine deaminase A homolog  HRSP12  heat-responsive protein 12  Symbol and/or name change 5135510 APPROVED