HSD3BP5 (hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5) - Rat Genome Database

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Gene: HSD3BP5 (hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5) Homo sapiens
Analyze
Symbol: HSD3BP5
Name: hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 5
RGD ID: 1343192
HGNC Page HGNC:5223
Description: INTERACTS WITH aflatoxin B1
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HSD3B1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381119,601,252 - 119,609,538 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1119,601,340 - 119,609,250 (+)EnsemblGRCh38hg38GRCh38
GRCh371120,143,875 - 120,152,161 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361119,945,486 - 119,953,637 (+)NCBINCBI36Build 36hg18NCBI36
Celera1118,374,611 - 118,382,807 (+)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1118,002,158 - 118,010,354 (+)NCBIHuRef
CHM1_11120,259,380 - 120,267,576 (+)NCBICHM1_1
T2T-CHM13v2.01119,614,455 - 119,622,741 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
aflatoxin B1  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10552929  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:180
Interacting mature miRNAs:182
Transcripts:ENST00000434856
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 44 7 6 5 2
Low 390 468 757 116 225 75 1893 195 796 213 446 1213 48 895 780 2
Below cutoff 1888 1934 827 386 862 270 2154 1703 2355 163 881 306 117 303 1760

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000434856
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1119,601,340 - 119,609,250 (+)Ensembl
RefSeq Acc Id: XR_017445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361119,945,486 - 119,953,637 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC HSD3BP5 COSMIC
Ensembl Genes ENSG00000198857 Ensembl
GTEx ENSG00000198857 GTEx
HGNC ID HGNC:5223 ENTREZGENE
Human Proteome Map HSD3BP5 Human Proteome Map
NCBI Gene 391081 ENTREZGENE
PharmGKB PA29492 PharmGKB