Gene-Chemical Interaction Annotations
Click to see Annotation Detail View
References
References - curated
Additional References at PubMed
Genomics
Variants
Clinical Variants
miRNA Target Status
Predicted Target Of
Summary Value | Count of predictions: | 1719 | Count of miRNA genes: | 814 | Interacting mature miRNAs: | 981 | Transcripts: | ENST00000412685, ENST00000413358, ENST00000426882, ENST00000438412, ENST00000444126, ENST00000449544, ENST00000454129, ENST00000454269, ENST00000602290, ENST00000602319, ENST00000602498, ENST00000602516, ENST00000602550, ENST00000602591, ENST00000602698, ENST00000602861 | Prediction methods: | Miranda, Rnahybrid | Result types: | miRGate_prediction | |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Markers in Region
RH15870 |
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RH46602 |
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RH98985 |
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SHGC-58578 |
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G31106 |
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D6S1174E |
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RH16369 |
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RH12871 |
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D6S2847 |
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Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | sensory system | visual system | adipose tissue | appendage | entire extraembryonic component | pharyngeal arch | |
High | ||||||||||||||||||
Medium | 57 | 5 | 302 | 17 | 209 | 18 | 147 | 40 | 284 | 33 | 156 | 253 | 6 | 15 | ||||
Low | 2381 | 2867 | 1419 | 602 | 1660 | 442 | 4208 | 2120 | 3426 | 385 | 1304 | 1360 | 169 | 1 | 1204 | 2772 | 6 | 2 |
Below cutoff | 118 | 5 | 5 | 82 | 5 | 1 | 37 | 24 | 1 | 1 |
Sequence
Nucleotide Sequences
RefSeq Acc Id: | ENST00000412685 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000413358 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000426882 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000438412 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000444126 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000449544 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000454129 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000454269 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602290 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602319 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602498 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602516 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602550 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602591 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602698 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000602861 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000653301 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000653541 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000654915 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000654996 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000656629 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000657247 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000657595 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000658695 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000659132 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000659563 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000659836 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000660593 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000664861 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000665953 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000666294 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000668243 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000668974 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000669374 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000670071 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000670397 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000686575 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000687430 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000687471 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000687815 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000691282 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | ENST00000702209 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_024052 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_024053 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_102326 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NR_102327 | ||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||
Type: | NON-CODING | ||||||||||||||||||||
Position: |
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Sequence: |
Promoters
RGD ID: | 15096006 | ||||||||
Promoter ID: | EPDNEWNC_H848 | ||||||||
Type: | initiation region | ||||||||
Name: | HCG18_3 | ||||||||
Description: | HLA complex group 18 [Source:HGNC Symbol;Acc:HGNC:31337] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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RGD ID: | 15096009 | ||||||||
Promoter ID: | EPDNEWNC_H850 | ||||||||
Type: | initiation region | ||||||||
Name: | HCG18_2 | ||||||||
Description: | HLA complex group 18 [Source:HGNC Symbol;Acc:HGNC:31337] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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RGD ID: | 15096011 | ||||||||
Promoter ID: | EPDNEWNC_H851 | ||||||||
Type: | initiation region | ||||||||
Name: | HCG18_1 | ||||||||
Description: | HLA complex group 18 [Source:HGNC Symbol;Acc:HGNC:31337] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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RGD ID: | 15096010 | ||||||||
Promoter ID: | EPDNEWNC_H852 | ||||||||
Type: | initiation region | ||||||||
Name: | HCG18_4 | ||||||||
Description: | HLA complex group 18 [Source:HGNC Symbol;Acc:HGNC:31337] | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing.; Paired-end sequencing. | ||||||||
Position: |
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Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | HCG18 | COSMIC |
Ensembl Genes | ENSG00000231074 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000653541 | ENTREZGENE |
ENST00000659132 | ENTREZGENE | |
GTEx | ENSG00000231074 | GTEx |
HGNC ID | HGNC:31337 | ENTREZGENE |
Human Proteome Map | HCG18 | Human Proteome Map |
NCBI Gene | 414777 | ENTREZGENE |
PharmGKB | PA134917494 | PharmGKB |
RNAcentral | URS000075CA48 | RNACentral |
URS000075CE1F | RNACentral | |
URS000075E03A | RNACentral | |
URS000075E925 | RNACentral |
Nomenclature History
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2018-05-22 | HCG18 | HLA complex group 18 | HLA complex group 18 (non-protein coding) | Symbol and/or name change | 5135510 | APPROVED | |
2011-09-13 | HCG18 | HLA complex group 18 (non-protein coding) | HCG18 | HLA complex group 18 | Symbol and/or name change | 5135510 | APPROVED |