NCL (nucleolin) - Rat Genome Database

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Advanced Search (OLGA)
Gene: NCL (nucleolin) Homo sapiens
Analyze
Symbol: NCL
Name: nucleolin
RGD ID: 1342988
HGNC Page HGNC:7667
Description: Enables several functions, including DNA topoisomerase binding activity; identical protein binding activity; and mRNA 5'-UTR binding activity. Involved in angiogenesis; negative regulation of translation; and positive regulation of transcription of nucleolar large rRNA by RNA polymerase I. Located in several cellular components, including cell cortex; cytoplasmic ribonucleoprotein granule; and nuclear lumen. Part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C23; FLJ45706; FLJ59041; Nsr1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: NCLP1   NCLP2  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,453,531 - 231,464,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,453,531 - 231,483,641 (-)EnsemblGRCh38hg38GRCh38
GRCh372232,318,242 - 232,329,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362232,027,703 - 232,037,449 (-)NCBINCBI36Build 36hg18NCBI36
Build 342232,144,964 - 232,154,710NCBI
Celera2226,095,812 - 226,105,543 (-)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,160,942 - 224,170,673 (-)NCBIHuRef
CHM1_12232,325,275 - 232,335,021 (-)NCBICHM1_1
T2T-CHM13v2.02231,937,970 - 231,948,923 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(Z)-3-butylidenephthalide  (EXP)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dimethoxyphenol  (EXP)
2,6-dinitrotoluene  (ISO)
2-bromohexadecanoic acid  (EXP)
3',5'-cyclic UMP  (EXP)
3-chloropropane-1,2-diol  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-vinylcyclohexene dioxide  (ISO)
5-fluorouracil  (EXP)
acrolein  (EXP)
afimoxifene  (EXP)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (EXP,ISO)
alpha-hexachlorocyclohexane  (ISO)
alpha-pinene  (EXP)
ammonium chloride  (ISO)
amsacrine  (EXP)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenic trichloride  (EXP)
arsenous acid  (EXP)
atrazine  (EXP)
benzo[a]pyrene  (EXP,ISO)
beta-lapachone  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (EXP)
Bisphenol B  (EXP)
bisphenol F  (EXP,ISO)
Brodifacoum  (ISO)
butanal  (EXP)
cadmium acetate  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
cannabidiol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlormequat chloride  (ISO)
chloropicrin  (EXP)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clobetasol  (ISO)
clofibric acid  (ISO)
clozapine  (ISO)
cobalt dichloride  (EXP)
coumarin  (EXP)
CU-O LINKAGE  (EXP)
Cuprizon  (EXP)
cyclosporin A  (EXP,ISO)
DDE  (EXP)
deoxynivalenol  (ISO)
diarsenic trioxide  (EXP)
dioxygen  (ISO)
disodium selenite  (EXP)
dopamine  (EXP)
doxorubicin  (EXP)
endosulfan  (ISO)
enzyme inhibitor  (EXP)
ethanol  (ISO)
felbamate  (ISO)
flutamide  (ISO)
folic acid  (ISO)
FR900359  (EXP)
fulvestrant  (EXP)
furfural  (EXP)
gabapentin  (ISO)
gentamycin  (ISO)
haloperidol  (ISO)
hydrogen peroxide  (EXP)
ivermectin  (EXP)
L-methionine  (ISO)
lipopolysaccharide  (EXP,ISO)
methidathion  (ISO)
methotrexate  (EXP)
methoxychlor  (ISO)
methyl methanesulfonate  (EXP)
N-methyl-4-phenylpyridinium  (EXP)
nitrates  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenytoin  (ISO)
pirinixic acid  (ISO)
raloxifene  (EXP)
resveratrol  (EXP,ISO)
rimonabant  (ISO)
SB 431542  (EXP)
sodium arsenite  (EXP,ISO)
sodium chloride  (EXP)
sodium dichromate  (ISO)
Soman  (ISO)
succimer  (ISO)
sulfasalazine  (ISO)
tanespimycin  (EXP)
temozolomide  (EXP)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
thiram  (EXP)
titanium dioxide  (ISO)
Tributyltin oxide  (ISO)
trichloroethene  (EXP,ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (EXP)
troglitazone  (ISO)
tungsten  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Autism  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Nucleolin: Dual roles in rDNA chromatin transcription. Durut N and Saez-Vasquez J, Gene. 2014 Sep 16. pii: S0378-1119(14)01049-X. doi: 10.1016/j.gene.2014.09.023.
2. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
3. Nucleolin protects the heart from ischaemia-reperfusion injury by up-regulating heat shock protein 32. Jiang B, etal., Cardiovasc Res. 2013 Jul 1;99(1):92-101. doi: 10.1093/cvr/cvt085. Epub 2013 Apr 16.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RNA polymerase I activity is regulated at multiple steps in the transcription cycle: recent insights into factors that influence transcription elongation. Schneider DA Gene. 2012 Feb 10;493(2):176-84. doi: 10.1016/j.gene.2011.08.006. Epub 2011 Aug 26.
7. [Expression of nucleolin in pressure overload-induced cardiac hypertrophy rats]. Yan S, etal., Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2014 Feb;39(2):124-8. doi: 10.11817/j.issn.1672-7347.2014.02.003.
Additional References at PubMed
PMID:1860869   PMID:2394707   PMID:2737305   PMID:3409881   PMID:7642087   PMID:7993898   PMID:8065311   PMID:8321232   PMID:8530516   PMID:8567649   PMID:8620867   PMID:8663258  
PMID:9388266   PMID:9512561   PMID:9642267   PMID:9822633   PMID:9918513   PMID:10393184   PMID:10503877   PMID:10567518   PMID:10660576   PMID:10967121   PMID:10983978   PMID:11115514  
PMID:11162542   PMID:11438699   PMID:12027446   PMID:12029088   PMID:12096904   PMID:12138209   PMID:12147681   PMID:12185196   PMID:12324461   PMID:12388589   PMID:12427757   PMID:12429849  
PMID:12477932   PMID:12506112   PMID:12559966   PMID:12565890   PMID:12634843   PMID:12777385   PMID:12804115   PMID:12944467   PMID:14559993   PMID:14623863   PMID:14636574   PMID:14638862  
PMID:14679209   PMID:14702039   PMID:14744259   PMID:14973189   PMID:14978336   PMID:15044383   PMID:15047060   PMID:15064750   PMID:15121898   PMID:15161933   PMID:15173179   PMID:15302935  
PMID:15303970   PMID:15371412   PMID:15492114   PMID:15674325   PMID:15815621   PMID:15823039   PMID:15848144   PMID:16135517   PMID:16153722   PMID:16156786   PMID:16196087   PMID:16212410  
PMID:16213212   PMID:16226712   PMID:16245305   PMID:16329155   PMID:16341674   PMID:16403913   PMID:16508016   PMID:16568080   PMID:16571724   PMID:16582619   PMID:16582966   PMID:16600179  
PMID:16601700   PMID:16648475   PMID:16698799   PMID:16751805   PMID:16777843   PMID:16889753   PMID:16964243   PMID:16982033   PMID:17081983   PMID:17130237   PMID:17215513   PMID:17220478  
PMID:17255095   PMID:17267499   PMID:17289661   PMID:17314511   PMID:17320986   PMID:17403666   PMID:17535846   PMID:17615292   PMID:17620599   PMID:17626252   PMID:17674968   PMID:17692122  
PMID:17765891   PMID:17767916   PMID:17928403   PMID:17932509   PMID:17974993   PMID:18029348   PMID:18258596   PMID:18292223   PMID:18298663   PMID:18299322   PMID:18321972   PMID:18457437  
PMID:18504038   PMID:18618420   PMID:18701711   PMID:18781797   PMID:18789156   PMID:18809582   PMID:18850631   PMID:19026635   PMID:19037095   PMID:19060367   PMID:19135240   PMID:19174163  
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PMID:21859890   PMID:21873635   PMID:21890473   PMID:21901101   PMID:21906983   PMID:21907836   PMID:21938743   PMID:21951318   PMID:22049078   PMID:22053931   PMID:22079093   PMID:22103682  
PMID:22113938   PMID:22130536   PMID:22178446   PMID:22199357   PMID:22234250   PMID:22318319   PMID:22349377   PMID:22354986   PMID:22362753   PMID:22412018   PMID:22433872   PMID:22505724  
PMID:22586326   PMID:22617883   PMID:22623428   PMID:22633274   PMID:22658674   PMID:22675465   PMID:22681889   PMID:22689669   PMID:22693611   PMID:22743058   PMID:22751105   PMID:22810585  
PMID:22863883   PMID:22865885   PMID:22909121   PMID:22939629   PMID:22952844   PMID:23000965   PMID:23076205   PMID:23125841   PMID:23132587   PMID:23145133   PMID:23146273   PMID:23151878  
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PMID:25326811   PMID:25428867   PMID:25437307   PMID:25561743   PMID:25590348   PMID:25593309   PMID:25631630   PMID:25670202   PMID:25695607   PMID:25698534   PMID:25698539   PMID:25737280  
PMID:25756610   PMID:25796446   PMID:25866190   PMID:25921135   PMID:25921289   PMID:25938538   PMID:25948554   PMID:25959826   PMID:25963833   PMID:25965334   PMID:25982273   PMID:26167880  
PMID:26170170   PMID:26183533   PMID:26209609   PMID:26231209   PMID:26238070   PMID:26254615   PMID:26283155   PMID:26318153   PMID:26344197   PMID:26354862   PMID:26399567   PMID:26460568  
PMID:26496610   PMID:26528759   PMID:26540346   PMID:26615563   PMID:26641092   PMID:26643866   PMID:26705694   PMID:26725010   PMID:26760575   PMID:26816005   PMID:26831064   PMID:26845719  
PMID:26846099   PMID:26867678   PMID:26979993   PMID:27025967   PMID:27049334   PMID:27085069   PMID:27158335   PMID:27221739   PMID:27309529   PMID:27373907   PMID:27462463   PMID:27503909  
PMID:27506938   PMID:27542246   PMID:27545878   PMID:27558965   PMID:27576135   PMID:27591049   PMID:27593939   PMID:27609421   PMID:27684187   PMID:27711134   PMID:27751915   PMID:27754848  
PMID:27976729   PMID:28031328   PMID:28065597   PMID:28103300   PMID:28131007   PMID:28153390   PMID:28195573   PMID:28202413   PMID:28225217   PMID:28300561   PMID:28302793   PMID:28416769  
PMID:28443643   PMID:28478507   PMID:28512205   PMID:28514442   PMID:28515276   PMID:28581483   PMID:28589727   PMID:28675297   PMID:28827664   PMID:28902428   PMID:28927264   PMID:28977666  
PMID:28986522   PMID:29104064   PMID:29168431   PMID:29180619   PMID:29229926   PMID:29298432   PMID:29331416   PMID:29395067   PMID:29449217   PMID:29467282   PMID:29472702   PMID:29507755  
PMID:29511261   PMID:29568061   PMID:29572507   PMID:29650282   PMID:29669786   PMID:29676528   PMID:29721183   PMID:29773831   PMID:29777862   PMID:29802200   PMID:29845934   PMID:29859926  
PMID:29943658   PMID:29974255   PMID:30006575   PMID:30021884   PMID:30064438   PMID:30130654   PMID:30196744   PMID:30209976   PMID:30291252   PMID:30320910   PMID:30320934   PMID:30344098  
PMID:30349055   PMID:30352685   PMID:30413534   PMID:30415952   PMID:30463901   PMID:30464179   PMID:30575818   PMID:30585729   PMID:30711629   PMID:30737378   PMID:30745168   PMID:30804502  
PMID:30809309   PMID:30839063   PMID:30855574   PMID:30884312   PMID:30931476   PMID:30940648   PMID:30948266   PMID:30948704   PMID:30997501   PMID:31010829   PMID:31046837   PMID:31048545  
PMID:31059266   PMID:31076518   PMID:31091453   PMID:31180492   PMID:31182601   PMID:31239290   PMID:31248990   PMID:31253590   PMID:31266968   PMID:31280863   PMID:31300519   PMID:31324722  
PMID:31363146   PMID:31397440   PMID:31476572   PMID:31501420   PMID:31536960   PMID:31586073   PMID:31620119   PMID:31644306   PMID:31665637   PMID:31754246   PMID:31797533   PMID:31839598  
PMID:31863900   PMID:31941781   PMID:31970402   PMID:31980649   PMID:31995728   PMID:32041737   PMID:32068487   PMID:32129710   PMID:32191439   PMID:32234886   PMID:32269044   PMID:32289342  
PMID:32296183   PMID:32416067   PMID:32433965   PMID:32529326   PMID:32538781   PMID:32552912   PMID:32587339   PMID:32665550   PMID:32687490   PMID:32698014   PMID:32786267   PMID:32807901  
PMID:32812023   PMID:32850835   PMID:32851058   PMID:32862374   PMID:32877691   PMID:32905556   PMID:32929379   PMID:32963011   PMID:32994395   PMID:33005030   PMID:33022573   PMID:33097685  
PMID:33194618   PMID:33222276   PMID:33306668   PMID:33460627   PMID:33545068   PMID:33596420   PMID:33644029   PMID:33658012   PMID:33729478   PMID:33731348   PMID:33762435   PMID:33892482  
PMID:33916271   PMID:33957083   PMID:33961781   PMID:34078433   PMID:34079125   PMID:34091597   PMID:34133714   PMID:34185411   PMID:34244565   PMID:34341513   PMID:34349018   PMID:34373451  
PMID:34383978   PMID:34428256   PMID:34445801   PMID:34462429   PMID:34468852   PMID:34537242   PMID:34599178   PMID:34650049   PMID:34728620   PMID:34799688   PMID:34831238   PMID:34901782  
PMID:35013218   PMID:35013556   PMID:35031058   PMID:35102251   PMID:35128835   PMID:35235311   PMID:35255831   PMID:35256949   PMID:35271311   PMID:35338135   PMID:35439318   PMID:35446349  
PMID:35509820   PMID:35516420   PMID:35530310   PMID:35545047   PMID:35546148   PMID:35562881   PMID:35563538   PMID:35575683   PMID:35583604   PMID:35652658   PMID:35676659   PMID:35687106  
PMID:35819319   PMID:35831314   PMID:35831895   PMID:35844135   PMID:35850772   PMID:35864588   PMID:35906200   PMID:35915203   PMID:35944360   PMID:35987950   PMID:36042349   PMID:36055981  
PMID:36057605   PMID:36059274   PMID:36107769   PMID:36114006   PMID:36168627   PMID:36180891   PMID:36199071   PMID:36209521   PMID:36215168   PMID:36244648   PMID:36282215   PMID:36335647  
PMID:36339263   PMID:36373674   PMID:36380368   PMID:36424410   PMID:36517590   PMID:36526897   PMID:36560452   PMID:36574265   PMID:36584595   PMID:36585612   PMID:36590901   PMID:36634849  
PMID:36652389   PMID:36740097   PMID:36762613   PMID:36880596   PMID:36912080   PMID:37052853   PMID:37059091   PMID:37071682   PMID:37098835   PMID:37117180   PMID:37223481   PMID:37249651  
PMID:37314180   PMID:37314216   PMID:37317656   PMID:37433992   PMID:37450367   PMID:37616343   PMID:37640791   PMID:37667382   PMID:37723588   PMID:37783786   PMID:37820061   PMID:37827155  
PMID:38113892   PMID:38139294   PMID:38172120   PMID:38334954   PMID:38409136   PMID:38558098   PMID:38697112   PMID:38777146   PMID:39066279   PMID:39238192   PMID:39358380   PMID:39501047  
PMID:39506849   PMID:39522233  


Genomics

Comparative Map Data
NCL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,453,531 - 231,464,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,453,531 - 231,483,641 (-)EnsemblGRCh38hg38GRCh38
GRCh372232,318,242 - 232,329,195 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362232,027,703 - 232,037,449 (-)NCBINCBI36Build 36hg18NCBI36
Build 342232,144,964 - 232,154,710NCBI
Celera2226,095,812 - 226,105,543 (-)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2224,160,942 - 224,170,673 (-)NCBIHuRef
CHM1_12232,325,275 - 232,335,021 (-)NCBICHM1_1
T2T-CHM13v2.02231,937,970 - 231,948,923 (-)NCBIT2T-CHM13v2.0
Ncl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39186,272,441 - 86,287,177 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl186,272,441 - 86,287,122 (-)EnsemblGRCm39 Ensembl
GRCm38186,344,719 - 86,359,455 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl186,344,719 - 86,359,400 (-)EnsemblGRCm38mm10GRCm38
MGSCv37188,241,294 - 88,256,030 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36188,175,890 - 88,190,626 (-)NCBIMGSCv36mm8
Celera189,309,614 - 89,324,350 (-)NCBICelera
Cytogenetic Map1C5NCBI
cM Map143.94NCBI
Ncl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8994,447,559 - 94,456,083 (-)NCBIGRCr8
mRatBN7.2986,999,588 - 87,008,112 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl986,998,019 - 87,008,136 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx995,417,234 - 95,425,754 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09100,546,259 - 100,554,894 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0998,927,937 - 98,936,461 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0993,369,119 - 93,377,643 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl993,368,932 - 93,377,643 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0993,097,881 - 93,106,405 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4985,112,752 - 85,121,276 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1985,296,294 - 85,304,569 (-)NCBI
Celera984,415,242 - 84,423,766 (-)NCBICelera
Cytogenetic Map9q35NCBI
Ncl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554534,154,627 - 4,164,253 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554534,154,627 - 4,164,253 (+)NCBIChiLan1.0ChiLan1.0
NCL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213134,073,955 - 134,085,192 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B134,088,920 - 134,100,157 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B118,703,148 - 118,712,893 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B237,490,378 - 237,500,193 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B237,490,378 - 237,500,193 (-)Ensemblpanpan1.1panPan2
NCL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12543,330,524 - 43,384,909 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2543,330,799 - 43,384,258 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2543,889,863 - 43,899,381 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02543,588,384 - 43,598,029 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2543,396,286 - 43,598,047 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12543,516,186 - 43,525,614 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02543,359,026 - 43,368,541 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02543,514,740 - 43,524,256 (-)NCBIUU_Cfam_GSD_1.0
NCL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15132,162,516 - 132,174,172 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115132,163,453 - 132,174,214 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215145,945,304 - 145,949,019 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NCL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110117,478,279 - 117,487,810 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604081,960,737 - 81,970,758 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248434,620,501 - 4,630,521 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NCL
49 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 2q32.3-37.3(chr2:194898783-236473913)x3 copy number gain See cases [RCV000051119] Chr2:194898783..236473913 [GRCh38]
Chr2:195763507..237382556 [GRCh37]
Chr2:195471752..237047295 [NCBI36]
Chr2:2q32.3-37.3		 pathogenic
GRCh38/hg38 2q37.1-37.3(chr2:231375505-242065208)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052639]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052639]|See cases [RCV000052639] Chr2:231375505..242065208 [GRCh38]
Chr2:232240216..243007359 [GRCh37]
Chr2:231948460..242656032 [NCBI36]
Chr2:2q37.1-37.3		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:188818195-242065208)x3 copy number gain See cases [RCV000052958] Chr2:188818195..242065208 [GRCh38]
Chr2:189682921..243007359 [GRCh37]
Chr2:189391166..242656032 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:190310736-241892770)x3 copy number gain See cases [RCV000052959] Chr2:190310736..241892770 [GRCh38]
Chr2:191175462..242834921 [GRCh37]
Chr2:190883707..242483594 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh38/hg38 2q32.3-37.3(chr2:193122313-241074980)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052960]|See cases [RCV000052960] Chr2:193122313..241074980 [GRCh38]
Chr2:193987039..242014395 [GRCh37]
Chr2:193695284..241663068 [NCBI36]
Chr2:2q32.3-37.3		 pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:227803148-242086301)x3 copy number gain See cases [RCV000052973] Chr2:227803148..242086301 [GRCh38]
Chr2:228667864..243028452 [GRCh37]
Chr2:228376108..242677125 [NCBI36]
Chr2:2q36.3-37.3		 pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:228723579-241404867)x3 copy number gain See cases [RCV000134169] Chr2:228723579..241404867 [GRCh38]
Chr2:229588295..242344282 [GRCh37]
Chr2:229296539..241992955 [NCBI36]
Chr2:2q36.3-37.3		 pathogenic
GRCh38/hg38 2q34-37.3(chr2:210579676-242126245)x3 copy number gain See cases [RCV000135934] Chr2:210579676..242126245 [GRCh38]
Chr2:211444400..243059659 [GRCh37]
Chr2:211152645..242717069 [NCBI36]
Chr2:2q34-37.3		 pathogenic
GRCh38/hg38 2q36.3-37.2(chr2:228014149-234976424)x3 copy number gain See cases [RCV000136967] Chr2:228014149..234976424 [GRCh38]
Chr2:228878865..235885068 [GRCh37]
Chr2:228587109..235549807 [NCBI36]
Chr2:2q36.3-37.2		 pathogenic
GRCh38/hg38 2q36.3-37.3(chr2:226978129-236886599)x1 copy number loss See cases [RCV000052637] Chr2:226978129..236886599 [GRCh38]
Chr2:227842845..237795242 [GRCh37]
Chr2:227551089..237459981 [NCBI36]
Chr2:2q36.3-37.3		 pathogenic
GRCh38/hg38 2q36.3-37.2(chr2:227343278-235339168)x1 copy number loss See cases [RCV000052638] Chr2:227343278..235339168 [GRCh38]
Chr2:228207994..236247812 [GRCh37]
Chr2:227916238..235912551 [NCBI36]
Chr2:2q36.3-37.2		 pathogenic
GRCh38/hg38 2q36.1-37.3(chr2:223992431-242126245)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052972]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052972]|See cases [RCV000052972] Chr2:223992431..242126245 [GRCh38]
Chr2:224857148..243059659 [GRCh37]
Chr2:224565392..242717069 [NCBI36]
Chr2:2q36.1-37.3		 pathogenic
GRCh38/hg38 2q35-37.3(chr2:218101759-242126245)x3 copy number gain See cases [RCV000143216] Chr2:218101759..242126245 [GRCh38]
Chr2:218966482..243059659 [GRCh37]
Chr2:218674727..242717069 [NCBI36]
Chr2:2q35-37.3		 pathogenic
GRCh38/hg38 2q32.2-37.3(chr2:189436149-241841232)x3 copy number gain See cases [RCV000142307] Chr2:189436149..241841232 [GRCh38]
Chr2:190300875..242783384 [GRCh37]
Chr2:190009120..242432057 [NCBI36]
Chr2:2q32.2-37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:14238-243048760)x3 copy number gain not provided [RCV000752802] Chr2:14238..243048760 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q35-37.3(chr2:219966808-237815985)x3 copy number gain See cases [RCV000448049] Chr2:219966808..237815985 [GRCh37]
Chr2:2q35-37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384) copy number gain See cases [RCV000512056] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q37.1(chr2:232215111-235593473)x1 copy number loss See cases [RCV000446723] Chr2:232215111..235593473 [GRCh37]
Chr2:2q37.1		 likely pathogenic
GRCh37/hg19 2q36.1-37.3(chr2:222077224-239394441)x3 copy number gain See cases [RCV000511816] Chr2:222077224..239394441 [GRCh37]
Chr2:2q36.1-37.3		 pathogenic
GRCh37/hg19 2q34-37.3(chr2:213518431-242783384)x3 copy number gain See cases [RCV000512009] Chr2:213518431..242783384 [GRCh37]
Chr2:2q34-37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:12771-242783384)x3 copy number gain See cases [RCV000511212] Chr2:12771..242783384 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NM_005381.3(NCL):c.400G>T (p.Ala134Ser) single nucleotide variant not specified [RCV004321245] Chr2:231461753 [GRCh38]
Chr2:232326464 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.641C>T (p.Thr214Ile) single nucleotide variant not specified [RCV004304057] Chr2:231460839 [GRCh38]
Chr2:232325550 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.726T>C (p.Asp242=) single nucleotide variant not provided [RCV000958626] Chr2:231460754 [GRCh38]
Chr2:232325465 [GRCh37]
Chr2:2q37.1		 benign
NM_005381.3(NCL):c.1605C>T (p.Asp535=) single nucleotide variant not provided [RCV000884313] Chr2:231456731 [GRCh38]
Chr2:232321442 [GRCh37]
Chr2:2q37.1		 benign
NM_005381.3(NCL):c.1755A>G (p.Glu585=) single nucleotide variant not provided [RCV000965624] Chr2:231456087 [GRCh38]
Chr2:232320798 [GRCh37]
Chr2:2q37.1		 benign
NM_005381.3(NCL):c.2056+10G>A single nucleotide variant not provided [RCV000949676] Chr2:231455391 [GRCh38]
Chr2:232320102 [GRCh37]
Chr2:2q37.1		 benign
GRCh37/hg19 2q35-37.3(chr2:219225872-242016876)x3 copy number gain not provided [RCV000682170] Chr2:219225872..242016876 [GRCh37]
Chr2:2q35-37.3		 pathogenic
GRCh37/hg19 2p25.3-q37.3(chr2:15672-243101834)x3 copy number gain not provided [RCV000752804] Chr2:15672..243101834 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
NM_005381.3(NCL):c.984C>T (p.Ser328=) single nucleotide variant not provided [RCV000891964] Chr2:231460208 [GRCh38]
Chr2:232324919 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.786GGA[2] (p.Glu271del) microsatellite not provided [RCV000893271] Chr2:231460686..231460688 [GRCh38]
Chr2:232325397..232325399 [GRCh37]
Chr2:2q37.1		 benign
NM_005381.3(NCL):c.1887C>T (p.Ala629=) single nucleotide variant not provided [RCV000973321] Chr2:231455570 [GRCh38]
Chr2:232320281 [GRCh37]
Chr2:2q37.1		 benign
NM_005381.3(NCL):c.1089G>A (p.Ala363=) single nucleotide variant not provided [RCV000933455] Chr2:231459077 [GRCh38]
Chr2:232323788 [GRCh37]
Chr2:2q37.1		 likely benign
GRCh37/hg19 2q31.2-37.3(chr2:178397959-243007457)x3 copy number gain See cases [RCV001263052] Chr2:178397959..243007457 [GRCh37]
Chr2:2q31.2-37.3		 pathogenic
NC_000002.11:g.(?_231033840)_(234978657_?)dup duplication Joubert syndrome 22 [RCV001877690]|Perlman syndrome [RCV001877689] Chr2:231033840..234978657 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1021G>A (p.Val341Ile) single nucleotide variant not specified [RCV004228808] Chr2:231460171 [GRCh38]
Chr2:232324882 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1613A>C (p.Glu538Ala) single nucleotide variant not specified [RCV004228378] Chr2:231456723 [GRCh38]
Chr2:232321434 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.166G>A (p.Ala56Thr) single nucleotide variant not specified [RCV004106083] Chr2:231461987 [GRCh38]
Chr2:232326698 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1863G>C (p.Glu621Asp) single nucleotide variant not specified [RCV004351596] Chr2:231455594 [GRCh38]
Chr2:232320305 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.780TGA[1] (p.Asp261del) microsatellite not provided [RCV003431170] Chr2:231460695..231460697 [GRCh38]
Chr2:232325406..232325408 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.1354A>G (p.Thr452Ala) single nucleotide variant not specified [RCV004826686] Chr2:231457736 [GRCh38]
Chr2:232322447 [GRCh37]
Chr2:2q37.1		 uncertain significance
Single allele duplication Hereditary spastic paraplegia [RCV005229755] Chr2:231348004..231684006 [GRCh38]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.741C>T (p.Asp247=) single nucleotide variant not provided [RCV000931233] Chr2:231460739 [GRCh38]
Chr2:232325450 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.347A>C (p.Lys116Thr) single nucleotide variant not provided [RCV000946692] Chr2:231461806 [GRCh38]
Chr2:232326517 [GRCh37]
Chr2:2q37.1		 benign
GRCh37/hg19 2q34-37.3(chr2:210779657-239879183)x3 copy number gain See cases [RCV000790568] Chr2:210779657..239879183 [GRCh37]
Chr2:2q34-37.3		 pathogenic
NM_005381.3(NCL):c.588G>C (p.Glu196Asp) single nucleotide variant not provided [RCV000897815] Chr2:231461565 [GRCh38]
Chr2:232326276 [GRCh37]
Chr2:2q37.1		 benign
GRCh37/hg19 2q36.3-37.3(chr2:230814690-242783384)x3 copy number gain not provided [RCV001007519] Chr2:230814690..242783384 [GRCh37]
Chr2:2q36.3-37.3		 pathogenic
NM_005381.3(NCL):c.1706-18dup duplication not provided [RCV001640013] Chr2:231456145..231456146 [GRCh38]
Chr2:232320856..232320857 [GRCh37]
Chr2:2q37.1		 benign
NM_005381.3(NCL):c.594C>T (p.Asp198=) single nucleotide variant not provided [RCV000900515] Chr2:231461559 [GRCh38]
Chr2:232326270 [GRCh37]
Chr2:2q37.1		 likely benign
GRCh37/hg19 2p25.3-q37.3(chr2:1-243199373) copy number gain Mosaic trisomy 2 [RCV002280628] Chr2:1..243199373 [GRCh37]
Chr2:2p25.3-q37.3		 pathogenic
GRCh37/hg19 2q35-37.3(chr2:219606537-239217703) copy number loss not specified [RCV002053285] Chr2:219606537..239217703 [GRCh37]
Chr2:2q35-37.3		 pathogenic
GRCh37/hg19 2q36.3-37.1(chr2:228807574-235475892) copy number loss not specified [RCV002053291] Chr2:228807574..235475892 [GRCh37]
Chr2:2q36.3-37.1		 pathogenic
GRCh37/hg19 2q37.1(chr2:232215111-235593473) copy number loss not specified [RCV002053294] Chr2:232215111..235593473 [GRCh37]
Chr2:2q37.1		 likely pathogenic
NM_005381.3(NCL):c.1606G>A (p.Ala536Thr) single nucleotide variant not specified [RCV004170102] Chr2:231456730 [GRCh38]
Chr2:232321441 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.714A>T (p.Glu238Asp) single nucleotide variant not specified [RCV004157208] Chr2:231460766 [GRCh38]
Chr2:232325477 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1984G>A (p.Gly662Ser) single nucleotide variant See cases [RCV003232846]|not specified [RCV004213940] Chr2:231455473 [GRCh38]
Chr2:232320184 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.556G>T (p.Asp186Tyr) single nucleotide variant not specified [RCV004154285] Chr2:231461597 [GRCh38]
Chr2:232326308 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.748G>A (p.Asp250Asn) single nucleotide variant not specified [RCV004125580] Chr2:231460732 [GRCh38]
Chr2:232325443 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1552C>A (p.Gln518Lys) single nucleotide variant not specified [RCV004075818] Chr2:231457020 [GRCh38]
Chr2:232321731 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.2120C>T (p.Thr707Met) single nucleotide variant not specified [RCV004142550] Chr2:231455204 [GRCh38]
Chr2:232319915 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.136G>A (p.Val46Ile) single nucleotide variant not specified [RCV004268130] Chr2:231462017 [GRCh38]
Chr2:232326728 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1592C>G (p.Ala531Gly) single nucleotide variant not specified [RCV004354711] Chr2:231456744 [GRCh38]
Chr2:232321455 [GRCh37]
Chr2:2q37.1		 uncertain significance
GRCh37/hg19 2q35-37.3(chr2:218376403-242783384)x3 copy number gain not provided [RCV003484087] Chr2:218376403..242783384 [GRCh37]
Chr2:2q35-37.3		 pathogenic
GRCh37/hg19 2q36.2-37.3(chr2:225995545-237594511)x3 copy number gain not provided [RCV003484091] Chr2:225995545..237594511 [GRCh37]
Chr2:2q36.2-37.3		 pathogenic
NM_005381.3(NCL):c.741CGA[3] (p.Asp250del) microsatellite not provided [RCV003440228] Chr2:231460728..231460730 [GRCh38]
Chr2:232325439..232325441 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.1572-3C>T single nucleotide variant not provided [RCV003440227] Chr2:231456767 [GRCh38]
Chr2:232321478 [GRCh37]
Chr2:2q37.1		 uncertain significance
Single allele duplication not provided [RCV003448672] Chr2:230077026..243049549 [GRCh37]
Chr2:2q36.3-37.3		 pathogenic
GRCh37/hg19 2q35-37.3(chr2:216815496-242782258)x3 copy number gain See cases [RCV004442836] Chr2:216815496..242782258 [GRCh37]
Chr2:2q35-37.3		 pathogenic
NM_005381.3(NCL):c.1951G>T (p.Gly651Cys) single nucleotide variant not specified [RCV004468641] Chr2:231455506 [GRCh38]
Chr2:232320217 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.686C>T (p.Ala229Val) single nucleotide variant not specified [RCV004468650] Chr2:231460794 [GRCh38]
Chr2:232325505 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1169G>A (p.Arg390Gln) single nucleotide variant not specified [RCV004468624] Chr2:231458386 [GRCh38]
Chr2:232323097 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.923A>G (p.Asn308Ser) single nucleotide variant not specified [RCV004468662] Chr2:231460269 [GRCh38]
Chr2:232324980 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1004A>G (p.Asp335Gly) single nucleotide variant not specified [RCV004468620] Chr2:231460188 [GRCh38]
Chr2:232324899 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.597T>G (p.Asp199Glu) single nucleotide variant not specified [RCV004468645] Chr2:231461556 [GRCh38]
Chr2:232326267 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.753A>T (p.Glu251Asp) single nucleotide variant not specified [RCV004468657] Chr2:231460727 [GRCh38]
Chr2:232325438 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.799G>A (p.Glu267Lys) single nucleotide variant not specified [RCV004652527] Chr2:231460681 [GRCh38]
Chr2:232325392 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1646A>G (p.Glu549Gly) single nucleotide variant not specified [RCV004652528] Chr2:231456690 [GRCh38]
Chr2:232321401 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.1991del (p.Gly664fs) deletion Autism [RCV004698676] Chr2:231455466 [GRCh38]
Chr2:232320177 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.308C>T (p.Ala103Val) single nucleotide variant not specified [RCV004826682] Chr2:231461845 [GRCh38]
Chr2:232326556 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.205A>G (p.Thr69Ala) single nucleotide variant not specified [RCV004826683] Chr2:231461948 [GRCh38]
Chr2:232326659 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.2095G>A (p.Asp699Asn) single nucleotide variant not specified [RCV004826688] Chr2:231455229 [GRCh38]
Chr2:232319940 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.112G>A (p.Glu38Lys) single nucleotide variant not specified [RCV004826684] Chr2:231463223 [GRCh38]
Chr2:232327934 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.914C>T (p.Thr305Met) single nucleotide variant not specified [RCV004826681] Chr2:231460278 [GRCh38]
Chr2:232324989 [GRCh37]
Chr2:2q37.1		 uncertain significance
NM_005381.3(NCL):c.474G>T (p.Glu158Asp) single nucleotide variant not specified [RCV004826687] Chr2:231461679 [GRCh38]
Chr2:232326390 [GRCh37]
Chr2:2q37.1		 likely benign
NM_005381.3(NCL):c.874G>C (p.Glu292Gln) single nucleotide variant not specified [RCV004826685] Chr2:231460502 [GRCh38]
Chr2:232325213 [GRCh37]
Chr2:2q37.1		 uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1755
Count of miRNA genes:894
Interacting mature miRNAs:1060
Transcripts:ENST00000322723, ENST00000356936, ENST00000417652, ENST00000436894, ENST00000453992, ENST00000454824, ENST00000461347, ENST00000466274, ENST00000484328, ENST00000494618
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597241416GWAS1337490_HC-reactive protein measurement QTL GWAS1337490 (human)7e-11C-reactive protein measurementblood C-reactive protein level (CMO:0003160)2231459799231459800Human
597468973GWAS1565047_Happendicular lean mass QTL GWAS1565047 (human)3e-33appendicular lean mass2231463970231463971Human
2289332BW376_HBody weight QTL 376 (human)1.870.00168Body fat amountabdominal2213765566239765566Human
597045328GWAS1141402_HC-reactive protein measurement QTL GWAS1141402 (human)9e-11C-reactive protein measurementblood C-reactive protein level (CMO:0003160)2231459799231459800Human
597497002GWAS1593076_Hlean body mass QTL GWAS1593076 (human)4e-13body lean mass (VT:0010483)total body lean mass (CMO:0003950)2231463970231463971Human
597400307GWAS1496381_Hnoise-induced hearing loss QTL GWAS1496381 (human)0.0000005noise-induced hearing loss2231457245231457246Human
597143375GWAS1239449_HC-reactive protein measurement QTL GWAS1239449 (human)2e-11C-reactive protein measurementblood C-reactive protein level (CMO:0003160)2231459799231459800Human
407052138GWAS701114_Hattention deficit hyperactivity disorder QTL GWAS701114 (human)6e-09attention deficit hyperactivity disorder2231454043231454044Human
596978698GWAS1098217_Hbody height QTL GWAS1098217 (human)7e-49body height2231463970231463971Human

Markers in Region
RH65048  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379139,707,751 - 139,707,856UniSTSGRCh37
GRCh372232,321,719 - 232,321,822UniSTSGRCh37
Build 362232,029,963 - 232,030,066RGDNCBI36
Celera9110,221,518 - 110,221,623UniSTS
Celera2226,098,072 - 226,098,175RGD
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map9q34.3UniSTS
HuRef9109,167,013 - 109,167,118UniSTS
HuRef2224,163,202 - 224,163,305UniSTS
RH120232  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,320,813 - 232,321,139UniSTSGRCh37
Build 362232,029,057 - 232,029,383RGDNCBI36
Celera2226,097,166 - 226,097,492RGD
Cytogenetic Map2q37.1UniSTS
HuRef2224,162,296 - 224,162,622UniSTS
TNG Radiation Hybrid Map2129386.0UniSTS
D2S1557E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,325,212 - 232,325,422UniSTSGRCh37
Build 362232,033,456 - 232,033,666RGDNCBI36
Celera2226,101,565 - 226,101,775RGD
Cytogenetic Map2q37.1UniSTS
HuRef2224,166,695 - 224,166,905UniSTS
PMC207647P1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,326,295 - 232,326,627UniSTSGRCh37
Build 362232,034,539 - 232,034,871RGDNCBI36
Celera2226,102,648 - 226,102,980RGD
Cytogenetic Map2q37.1UniSTS
HuRef2224,167,778 - 224,168,110UniSTS
RH11536  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,319,627 - 232,319,753UniSTSGRCh37
Build 362232,027,871 - 232,027,997RGDNCBI36
Celera2226,095,980 - 226,096,106RGD
Cytogenetic Map2q37.1UniSTS
HuRef2224,161,110 - 224,161,236UniSTS
GeneMap99-GB4 RH Map2715.47UniSTS
D2S2594  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37528,708,452 - 28,708,727UniSTSGRCh37
GRCh372232,319,622 - 232,319,896UniSTSGRCh37
Build 362232,027,866 - 232,028,140RGDNCBI36
Celera528,591,019 - 28,591,294UniSTS
Celera2226,095,975 - 226,096,249RGD
Cytogenetic Map2q37.1UniSTS
HuRef528,676,678 - 28,676,953UniSTS
HuRef2224,161,105 - 224,161,379UniSTS
GeneMap99-GB4 RH Map2715.68UniSTS
Whitehead-RH Map21059.1UniSTS
Whitehead-YAC Contig Map2 UniSTS
GeneMap99-G3 RH Map52138.0UniSTS
NCL_3022  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,319,433 - 232,320,022UniSTSGRCh37
Build 362232,027,677 - 232,028,266RGDNCBI36
Celera2226,095,786 - 226,096,375RGD
HuRef2224,160,916 - 224,161,505UniSTS
NCL  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372232,322,358 - 232,322,478UniSTSGRCh37
Celera2226,098,711 - 226,098,831UniSTS
HuRef2224,163,841 - 224,163,961UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2252 4974 1726 2351 6 624 1951 465 2270 7305 6471 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_005381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC017104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK095897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY320411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM761058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ001029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HF583821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000322723   ⟹   ENSP00000318195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,453,531 - 231,464,484 (-)Ensembl
Ensembl Acc Id: ENST00000356936   ⟹   ENSP00000349410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,455,191 - 231,464,353 (-)Ensembl
Ensembl Acc Id: ENST00000417652   ⟹   ENSP00000392747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,808 - 231,464,207 (-)Ensembl
Ensembl Acc Id: ENST00000436894   ⟹   ENSP00000401322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,455,191 - 231,463,693 (-)Ensembl
Ensembl Acc Id: ENST00000453992   ⟹   ENSP00000413775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,808 - 231,464,180 (-)Ensembl
Ensembl Acc Id: ENST00000454824   ⟹   ENSP00000401620
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,455,191 - 231,464,199 (-)Ensembl
Ensembl Acc Id: ENST00000461347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,908 - 231,483,641 (-)Ensembl
Ensembl Acc Id: ENST00000466274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,456,010 - 231,457,410 (-)Ensembl
Ensembl Acc Id: ENST00000484328
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,462,992 - 231,464,379 (-)Ensembl
Ensembl Acc Id: ENST00000494618
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,457,426 - 231,460,725 (-)Ensembl
Ensembl Acc Id: ENST00000676514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,748 - 231,464,518 (-)Ensembl
Ensembl Acc Id: ENST00000676690   ⟹   ENSP00000504613
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,895 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000676798
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,751 - 231,464,518 (-)Ensembl
Ensembl Acc Id: ENST00000676913   ⟹   ENSP00000503098
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,879 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000677703
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,748 - 231,461,171 (-)Ensembl
Ensembl Acc Id: ENST00000677786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,455,276 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000678131   ⟹   ENSP00000504385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,879 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000678246   ⟹   ENSP00000503707
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,752 - 231,464,518 (-)Ensembl
Ensembl Acc Id: ENST00000678364   ⟹   ENSP00000504707
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,879 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000678405   ⟹   ENSP00000503250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,879 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000678729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,879 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000678828   ⟹   ENSP00000503432
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,749 - 231,464,489 (-)Ensembl
Ensembl Acc Id: ENST00000678849   ⟹   ENSP00000503057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,879 - 231,464,551 (-)Ensembl
Ensembl Acc Id: ENST00000679348   ⟹   ENSP00000504694
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,808 - 231,464,494 (-)Ensembl
RefSeq Acc Id: NM_005381   ⟹   NP_005372
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382231,453,531 - 231,464,484 (-)NCBI
GRCh372232,319,459 - 232,329,208 (-)NCBI
Build 362232,027,703 - 232,037,449 (-)NCBI Archive
HuRef2224,160,942 - 224,170,673 (-)ENTREZGENE
CHM1_12232,325,275 - 232,335,021 (-)NCBI
T2T-CHM13v2.02231,937,970 - 231,948,923 (-)NCBI
Sequence:
RefSeq Acc Id: NP_005372   ⟸   NM_005381
- UniProtKB: Q9UCF0 (UniProtKB/Swiss-Prot),   Q8NB06 (UniProtKB/Swiss-Prot),   Q53SK1 (UniProtKB/Swiss-Prot),   Q9UDG1 (UniProtKB/Swiss-Prot),   P19338 (UniProtKB/Swiss-Prot),   A0A7I2V3F3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000413775   ⟸   ENST00000453992
Ensembl Acc Id: ENSP00000318195   ⟸   ENST00000322723
Ensembl Acc Id: ENSP00000401620   ⟸   ENST00000454824
Ensembl Acc Id: ENSP00000392747   ⟸   ENST00000417652
Ensembl Acc Id: ENSP00000349410   ⟸   ENST00000356936
Ensembl Acc Id: ENSP00000401322   ⟸   ENST00000436894
Ensembl Acc Id: ENSP00000503098   ⟸   ENST00000676913
Ensembl Acc Id: ENSP00000504613   ⟸   ENST00000676690
Ensembl Acc Id: ENSP00000503250   ⟸   ENST00000678405
Ensembl Acc Id: ENSP00000504707   ⟸   ENST00000678364
Ensembl Acc Id: ENSP00000503707   ⟸   ENST00000678246
Ensembl Acc Id: ENSP00000504385   ⟸   ENST00000678131
Ensembl Acc Id: ENSP00000503432   ⟸   ENST00000678828
Ensembl Acc Id: ENSP00000503057   ⟸   ENST00000678849
Ensembl Acc Id: ENSP00000504694   ⟸   ENST00000679348
Protein Domains
RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P19338-F1-model_v2 AlphaFold P19338 1-710 view protein structure

Promoters
RGD ID:6863064
Promoter ID:EPDNEW_H4697
Type:initiation region
Name:NCL_1
Description:nucleolin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382231,464,484 - 231,464,544EPDNEW
RGD ID:6797862
Promoter ID:HG_KWN:37701
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Jurkat,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000332746
Position:
Human AssemblyChrPosition (strand)Source
Build 362232,030,016 - 232,031,217 (-)MPROMDB
RGD ID:6797858
Promoter ID:HG_KWN:37702
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Lymphoblastoid
Transcripts:OTTHUMT00000332745
Position:
Human AssemblyChrPosition (strand)Source
Build 362232,031,261 - 232,032,297 (-)MPROMDB
RGD ID:6797859
Promoter ID:HG_KWN:37703
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000332744
Position:
Human AssemblyChrPosition (strand)Source
Build 362232,033,276 - 232,034,617 (-)MPROMDB
RGD ID:6815326
Promoter ID:HG_MRA:9596
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:AK000250
Position:
Human AssemblyChrPosition (strand)Source
Build 362232,035,766 - 232,036,266 (-)MPROMDB
RGD ID:6797185
Promoter ID:HG_KWN:37704
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000322732,   ENST00000356936,   ENST00000392033,   OTTHUMT00000332731,   OTTHUMT00000332739,   OTTHUMT00000332740,   OTTHUMT00000332741,   OTTHUMT00000332742,   OTTHUMT00000332743
Position:
Human AssemblyChrPosition (strand)Source
Build 362232,036,936 - 232,038,362 (-)MPROMDB
RGD ID:6849432
Promoter ID:EP36018
Type:multiple initiation site
Name:HS_NCL
Description:Nucleolin.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Notes:homology_group=Homology group 212; Mammalian nucleolin.
Experiment Methods:Nuclease protection; Primer extension with homologous sequence ladder; NEDO full length human cDNA sequencing project.; Oligo-capping; Mammalian gene collection (MGC) full-length cDNA cloning
Regulation:housekeeping gene; (induced by or strongly expressed in) cell proliferation
Position:
Human AssemblyChrPosition (strand)Source
Build 362232,037,439 - 232,037,499EPD

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:7667 AgrOrtholog
COSMIC NCL COSMIC
Ensembl Genes ENSG00000115053 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000322723 ENTREZGENE
  ENST00000322723.9 UniProtKB/Swiss-Prot
  ENST00000356936.6 UniProtKB/TrEMBL
  ENST00000417652.6 UniProtKB/TrEMBL
  ENST00000436894.2 UniProtKB/TrEMBL
  ENST00000453992.6 UniProtKB/TrEMBL
  ENST00000454824.6 UniProtKB/TrEMBL
  ENST00000676690.1 UniProtKB/TrEMBL
  ENST00000676913.1 UniProtKB/TrEMBL
  ENST00000678131.1 UniProtKB/TrEMBL
  ENST00000678246.1 UniProtKB/TrEMBL
  ENST00000678364.1 UniProtKB/TrEMBL
  ENST00000678405.1 UniProtKB/TrEMBL
  ENST00000678828.1 UniProtKB/TrEMBL
  ENST00000678849.1 UniProtKB/TrEMBL
  ENST00000679348.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000115053 GTEx
HGNC ID HGNC:7667 ENTREZGENE
Human Proteome Map NCL Human Proteome Map
InterPro Euk_RNA-bind_prot UniProtKB/TrEMBL
  Nucleolin_RRM1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleolin_RRM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleolin_RRM3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleolin_RRM4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRT5_SRSF_SR UniProtKB/TrEMBL
KEGG Report hsa:4691 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 4691 ENTREZGENE
OMIM 164035 OMIM
PANTHER AGL056WP UniProtKB/TrEMBL
  EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FI24008P1 UniProtKB/TrEMBL
  NUCLEAR RNA-BINDING PROTEIN SART-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NUCLEOLIN UniProtKB/TrEMBL
  OS02G0815200 PROTEIN UniProtKB/TrEMBL
  RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  RRM DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA31469 PharmGKB
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A7I2V2S8_HUMAN UniProtKB/TrEMBL
  A0A7I2V2U7_HUMAN UniProtKB/TrEMBL
  A0A7I2V349_HUMAN UniProtKB/TrEMBL
  A0A7I2V3F3 ENTREZGENE, UniProtKB/TrEMBL
  A0A7I2V428_HUMAN UniProtKB/TrEMBL
  A0A7I2V506_HUMAN UniProtKB/TrEMBL
  A0A7I2V5M5_HUMAN UniProtKB/TrEMBL
  A0A7I2V699_HUMAN UniProtKB/TrEMBL
  B3KM80_HUMAN UniProtKB/TrEMBL
  C9JLB1_HUMAN UniProtKB/TrEMBL
  H7BY16_HUMAN UniProtKB/TrEMBL
  L8EAF1_HUMAN UniProtKB/TrEMBL
  NUCL_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q53SK1 ENTREZGENE
  Q8NB06 ENTREZGENE
  Q9UCF0 ENTREZGENE
  Q9UDG1 ENTREZGENE
UniProt Secondary C9J1H7 UniProtKB/TrEMBL
  C9JWL1 UniProtKB/TrEMBL
  C9JYW2 UniProtKB/TrEMBL
  Q53SK1 UniProtKB/Swiss-Prot
  Q8NB06 UniProtKB/Swiss-Prot
  Q9UCF0 UniProtKB/Swiss-Prot
  Q9UDG1 UniProtKB/Swiss-Prot