IGKV2-26 (immunoglobulin kappa variable 2-26 (pseudogene)) - Rat Genome Database

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Gene: IGKV2-26 (immunoglobulin kappa variable 2-26 (pseudogene)) Homo sapiens
Analyze
Symbol: IGKV2-26
Name: immunoglobulin kappa variable 2-26 (pseudogene)
RGD ID: 1342503
HGNC Page HGNC:5782
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: A21; IGKV226
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38289,196,076 - 89,196,829 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl289,196,096 - 89,196,829 (-)EnsemblGRCh38hg38GRCh38
GRCh37289,495,564 - 89,496,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36289,276,679 - 89,277,432 (-)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map2p11.2NCBI
CHM1_1289,425,190 - 89,425,943 (-)NCBICHM1_1
T2T-CHM13v2.0289,205,085 - 89,205,838 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (HEP)

References

References - curated
# Reference Title Reference Citation
1. Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients. Xiong Y, etal., Emerg Microbes Infect. 2020 Dec;9(1):761-770. doi: 10.1080/22221751.2020.1747363.
Additional References at PubMed
PMID:8011175   PMID:15196210   PMID:17847085   PMID:17942751   PMID:18606680  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:236
Count of miRNA genes:225
Interacting mature miRNAs:231
Transcripts:ENST00000518305
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 75 16 16 22 175 2 1 5 28 22 7 1
Low 603 503 155 156 821 40 90 9 24 37 107 444 117 98 42
Below cutoff 276 550 348 165 328 149 374 142 239 57 221 310 15 232 198

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_000834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC244255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ972260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AP001238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY271360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY320596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY320844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU146366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU146367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU146369 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU146370 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU146371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FR666912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X71884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z85537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z85909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000518305
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl289,196,096 - 89,196,829 (-)Ensembl
Protein Sequences
GenBank Protein AAQ21906 (Get FASTA)   NCBI Sequence Viewer  
  AAQ22137 (Get FASTA)   NCBI Sequence Viewer  
  CAI99744 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC IGKV2-26 COSMIC
Ensembl Genes ENSG00000254098 Ensembl, ENTREZGENE
GTEx ENSG00000254098 GTEx
HGNC ID HGNC:5782 ENTREZGENE
Human Proteome Map IGKV2-26 Human Proteome Map
NCBI Gene 28922 ENTREZGENE
PharmGKB PA35362 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGKV2-26  immunoglobulin kappa variable 2-26 (pseudogene)  IGKV2-26  immunoglobulin kappa variable 2-26 pseudogene  Symbol and/or name change 5135510 APPROVED