PIGBOS1 (PIGB opposite strand 1) - Rat Genome Database

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Gene: PIGBOS1 (PIGB opposite strand 1) Canis lupus familiaris
Analyze
Symbol: PIGBOS1
Name: PIGB opposite strand 1
RGD ID: 13355436
Description: INVOLVED IN regulation of endoplasmic reticulum unfolded protein response (ortholog); FOUND IN mitochondrial outer membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein PIGBOS1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13020,716,509 - 20,718,608 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3020,680,878 - 20,683,534 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03020,865,474 - 20,868,145 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13020,809,331 - 20,811,991 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03020,893,388 - 20,896,057 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03021,025,157 - 21,027,833 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
PIGBOS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13020,716,509 - 20,718,608 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3020,680,878 - 20,683,534 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03020,865,474 - 20,868,145 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13020,809,331 - 20,811,991 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03020,893,388 - 20,896,057 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03021,025,157 - 21,027,833 (-)NCBIUU_Cfam_GSD_1.0
PIGBOS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381555,317,184 - 55,319,123 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1555,317,184 - 55,319,161 (-)EnsemblGRCh38hg38GRCh38
GRCh371555,609,382 - 55,611,321 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map15q21.3NCBI
HuRef1532,435,319 - 32,437,272 (-)NCBIHuRef
CHM1_11555,727,850 - 55,729,854 (-)NCBICHM1_1
T2T-CHM13v2.01553,120,373 - 53,122,312 (-)NCBIT2T-CHM13v2.0
Pigbos1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39972,947,000 - 72,950,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl972,947,000 - 72,950,061 (+)EnsemblGRCm39 Ensembl
GRCm38973,039,718 - 73,042,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl973,039,718 - 73,042,779 (+)EnsemblGRCm38mm10GRCm38
MGSCv37972,887,522 - 72,890,582 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera970,225,950 - 70,229,009 (+)NCBICelera
Cytogenetic Map9DNCBI
cM Map940.08NCBI
Pigbos1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8882,656,376 - 82,660,745 (+)NCBIGRCr8
mRatBN7.2873,775,732 - 73,780,102 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl873,775,732 - 73,780,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx879,299,048 - 79,303,405 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0877,571,656 - 77,576,013 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0875,409,007 - 75,413,364 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0879,715,337 - 79,719,706 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0873,370,273 - 73,373,883 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera867,975,369 - 67,979,746 (-)NCBICelera
Cytogenetic Map8q24NCBI
PIGBOS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21644,579,608 - 44,618,576 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11548,762,432 - 48,801,696 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01534,286,568 - 34,325,835 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11552,609,721 - 52,611,705 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1552,610,151 - 52,610,315 (-)Ensemblpanpan1.1panPan2
Pigbos1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864098,978,831 - 98,980,853 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493647116,827,097 - 16,829,005 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGBOS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1116,522,226 - 116,522,390 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11116,519,834 - 116,522,515 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21129,056,601 - 129,060,650 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGBOS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12628,115,884 - 28,120,997 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666048113,147,162 - 113,155,289 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigbos1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247316,304,962 - 6,307,303 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PIGBOS1
35 total Variants

Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_022412648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022412651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038442398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038516851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038580483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038644786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005304863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005316412 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005347931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005381690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005415494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_022412648   ⟹   XP_022268356
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13020,716,509 - 20,718,524 (-)NCBI
Dog10K_Boxer_Tasha3020,680,878 - 20,683,137 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412649   ⟹   XP_022268357
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13020,716,509 - 20,718,524 (-)NCBI
Dog10K_Boxer_Tasha3020,680,878 - 20,683,136 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412650   ⟹   XP_022268358
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13020,716,509 - 20,718,524 (-)NCBI
Dog10K_Boxer_Tasha3020,680,878 - 20,683,139 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022412651   ⟹   XP_022268359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.13020,716,509 - 20,718,608 (-)NCBI
Dog10K_Boxer_Tasha3020,680,878 - 20,683,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038442395   ⟹   XP_038298323
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03020,865,474 - 20,867,734 (-)NCBI
RefSeq Acc Id: XM_038442396   ⟹   XP_038298324
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03020,865,474 - 20,867,733 (-)NCBI
RefSeq Acc Id: XM_038442397   ⟹   XP_038298325
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03020,865,474 - 20,867,735 (-)NCBI
RefSeq Acc Id: XM_038442398   ⟹   XP_038298326
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03020,865,474 - 20,867,737 (-)NCBI
RefSeq Acc Id: XM_038516848   ⟹   XP_038372776
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13020,809,331 - 20,811,585 (-)NCBI
RefSeq Acc Id: XM_038516849   ⟹   XP_038372777
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13020,809,331 - 20,811,585 (-)NCBI
RefSeq Acc Id: XM_038516850   ⟹   XP_038372778
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13020,809,331 - 20,811,587 (-)NCBI
RefSeq Acc Id: XM_038516851   ⟹   XP_038372779
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13020,809,331 - 20,811,589 (-)NCBI
RefSeq Acc Id: XM_038580480   ⟹   XP_038436408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03021,025,157 - 21,027,416 (-)NCBI
RefSeq Acc Id: XM_038580481   ⟹   XP_038436409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03021,025,157 - 21,027,415 (-)NCBI
RefSeq Acc Id: XM_038580482   ⟹   XP_038436410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03021,025,157 - 21,027,418 (-)NCBI
RefSeq Acc Id: XM_038580483   ⟹   XP_038436411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03021,025,157 - 21,027,419 (-)NCBI
RefSeq Acc Id: XM_038644783   ⟹   XP_038500711
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03020,893,388 - 20,895,646 (-)NCBI
RefSeq Acc Id: XM_038644784   ⟹   XP_038500712
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03020,893,388 - 20,895,646 (-)NCBI
RefSeq Acc Id: XM_038644785   ⟹   XP_038500713
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03020,893,388 - 20,895,648 (-)NCBI
RefSeq Acc Id: XM_038644786   ⟹   XP_038500714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03020,893,388 - 20,895,650 (-)NCBI
RefSeq Acc Id: XR_005304863
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.03020,865,812 - 20,868,145 (-)NCBI
RefSeq Acc Id: XR_005316412
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3020,681,216 - 20,683,534 (-)NCBI
RefSeq Acc Id: XR_005347931
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.13020,809,669 - 20,811,991 (-)NCBI
RefSeq Acc Id: XR_005381690
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.03021,025,495 - 21,027,833 (-)NCBI
RefSeq Acc Id: XR_005415494
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.03020,893,726 - 20,896,057 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_022268359   ⟸   XM_022412651
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268357   ⟸   XM_022412649
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268358   ⟸   XM_022412650
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022268356   ⟸   XM_022412648
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038372779   ⟸   XM_038516851
RefSeq Acc Id: XP_038372778   ⟸   XM_038516850
RefSeq Acc Id: XP_038372777   ⟸   XM_038516849
RefSeq Acc Id: XP_038372776   ⟸   XM_038516848
RefSeq Acc Id: XP_038500714   ⟸   XM_038644786
RefSeq Acc Id: XP_038500713   ⟸   XM_038644785
RefSeq Acc Id: XP_038500712   ⟸   XM_038644784
RefSeq Acc Id: XP_038500711   ⟸   XM_038644783
RefSeq Acc Id: XP_038298326   ⟸   XM_038442398
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298325   ⟸   XM_038442397
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298323   ⟸   XM_038442395
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038298324   ⟸   XM_038442396
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436411   ⟸   XM_038580483
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436410   ⟸   XM_038580482
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436408   ⟸   XM_038580480
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436409   ⟸   XM_038580481
- UniProtKB: A0A8C0TU34 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00030015769 UniProtKB/TrEMBL
  ENSCAFG00040025577 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030029031.1 UniProtKB/TrEMBL
  ENSCAFT00040047734.1 UniProtKB/TrEMBL
NCBI Gene PIGBOS1 ENTREZGENE
UniProt A0A8C0TU34 ENTREZGENE, UniProtKB/TrEMBL