Or4k15c (olfactory receptor family 4 subfamily K member 15C) - Rat Genome Database

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Pathways
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Gene: Or4k15c (olfactory receptor family 4 subfamily K member 15C) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or4k15c
Name: olfactory receptor family 4 subfamily K member 15C
RGD ID: 1334075
Description: Predicted to enable olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane. Orthologous to human OR4K15 (olfactory receptor family 4 subfamily K member 15).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1626; olfactory receptor gene Olr1626; olfactory receptor Olr1626; Olr1626; ratchr15-26477126-26476155_ORF
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81525,718,860 - 25,719,831 (-)NCBIGRCr8
mRatBN7.21523,239,276 - 23,240,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1523,238,152 - 23,247,392 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1526,016,533 - 26,017,504 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01526,977,877 - 26,978,848 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01525,225,089 - 25,226,060 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01526,855,270 - 26,856,241 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1526,855,270 - 26,856,241 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01530,781,449 - 30,782,420 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41526,460,455 - 26,461,426 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11526,476,154 - 26,477,126 (-)NCBI
Celera1523,589,610 - 23,590,581 (-)NCBICelera
Cytogenetic Map15p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
plasma membrane  (IBA,IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or4k15c
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:57
Count of miRNA genes:49
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000016667
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354657Despr13Despair related QTL 130.0022locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)15129912054Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
5685002Bss103Bone structure and strength QTL 1032.8tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)151448116528469888Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system integumental system musculoskeletal system nervous system respiratory system appendage
High
Medium
Low
Below cutoff 1 1 1 1 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001000090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016667   ⟹   ENSRNOP00000016667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1523,238,152 - 23,247,392 (-)Ensembl
Rnor_6.0 Ensembl1526,855,270 - 26,856,241 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000016674   ⟹   ENSRNOP00000016674
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1523,238,152 - 23,247,392 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000098389   ⟹   ENSRNOP00000081120
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1523,238,152 - 23,247,392 (-)Ensembl
RefSeq Acc Id: NM_001000090   ⟹   NP_001000090
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81525,718,860 - 25,719,831 (-)NCBI
mRatBN7.21523,239,276 - 23,240,247 (-)NCBI
Rnor_6.01526,855,270 - 26,856,241 (-)NCBI
Rnor_5.01530,781,449 - 30,782,420 (-)NCBI
RGSC_v3.41526,460,455 - 26,461,426 (-)RGD
Celera1523,589,610 - 23,590,581 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001000090 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016667.2
  ENSRNOP00000016674
  ENSRNOP00000016674.2
  ENSRNOP00000081120.1
Reference Protein Sequences
RefSeq Acc Id: NP_001000090   ⟸   NM_001000090
- UniProtKB: D3ZSF6 (UniProtKB/TrEMBL),   D3ZSE2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000016667   ⟸   ENSRNOT00000016667
RefSeq Acc Id: ENSRNOP00000081120   ⟸   ENSRNOT00000098389
RefSeq Acc Id: ENSRNOP00000016674   ⟸   ENSRNOT00000016674
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSF6-F1-model_v2 AlphaFold D3ZSF6 1-323 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1334075 AgrOrtholog
BioCyc Gene G2FUF-14094 BioCyc
Ensembl Genes ENSRNOG00000012497 Ensembl
  ENSRNOG00000067438 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016667.3 UniProtKB/TrEMBL
  ENSRNOT00000016674 ENTREZGENE
  ENSRNOT00000016674.3 UniProtKB/TrEMBL
  ENSRNOT00000098389.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:290002 UniProtKB/TrEMBL
NCBI Gene 290002 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 4K15 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or4k15c PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012497 RatGTEx
  ENSRNOG00000067438 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt D3ZSE2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZSF6 ENTREZGENE
UniProt Secondary D3ZSF6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or4k15c  olfactory receptor family 4 subfamily K member 15C  Olr1626  olfactory receptor 1626  Symbol and Name Changed 1299863 APPROVED
2008-04-30 Olr1626  olfactory receptor 1626   Olr1626_predicted  olfactory receptor 1626 (predicted)  'predicted' is removed 2292626 APPROVED
2005-02-04 Olr1626_predicted  olfactory receptor 1626 (predicted)      Symbol and Name status set to approved 70820 APPROVED