Or9s23 (olfactory receptor family 9 subfamily S member 23) - Rat Genome Database

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Pathways
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Gene: Or9s23 (olfactory receptor family 9 subfamily S member 23) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Or9s23
Name: olfactory receptor family 9 subfamily S member 23
RGD ID: 1333345
Description: Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway and detection of chemical stimulus involved in sensory perception of smell. Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: olfactory receptor 1347; olfactory receptor gene Olr1347; olfactory receptor Olr1347; Olr1347
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89100,578,941 - 100,579,912 (+)NCBIGRCr8
mRatBN7.2993,131,483 - 93,132,454 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl993,129,472 - 93,135,652 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9101,567,235 - 101,568,206 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09106,702,994 - 106,703,965 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09105,059,158 - 105,060,129 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0999,735,011 - 99,735,982 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl999,735,011 - 99,735,982 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0999,400,125 - 99,401,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4991,779,443 - 91,780,414 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1991,984,211 - 91,985,183 (+)NCBI
Celera990,669,404 - 90,670,375 (+)NCBICelera
Cytogenetic Map9q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Gibbs RA, etal., Nature 2004 Apr 1;428(6982):493-521.
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Or9s23
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000051413
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000051413   ⟹   ENSRNOP00000043969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl999,735,011 - 99,735,982 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096627   ⟹   ENSRNOP00000082771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl993,129,472 - 93,135,652 (+)Ensembl
RefSeq Acc Id: NM_001001121   ⟹   NP_001001121
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr89100,578,941 - 100,579,912 (+)NCBI
mRatBN7.2993,131,483 - 93,132,454 (+)NCBI
Rnor_6.0999,735,011 - 99,735,982 (+)NCBI
Rnor_5.0999,400,125 - 99,401,096 (+)NCBI
RGSC_v3.4991,779,443 - 91,780,414 (+)RGD
Celera990,669,404 - 90,670,375 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001001121 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC64599 (Get FASTA)   NCBI Sequence Viewer  
  EDL91989 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000082771
  ENSRNOP00000082771.1
Reference Protein Sequences
RefSeq Acc Id: NP_001001121   ⟸   NM_001001121
- UniProtKB: G3V9E6 (UniProtKB/TrEMBL),   A6JQU8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000043969   ⟸   ENSRNOT00000051413
RefSeq Acc Id: ENSRNOP00000082771   ⟸   ENSRNOT00000096627
Protein Domains
G-protein coupled receptors family 1 profile

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-G3V9E6-F1-model_v2 AlphaFold G3V9E6 1-323 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1333345 AgrOrtholog
BioCyc Gene G2FUF-26685 BioCyc
Ensembl Genes ENSRNOG00000047997 Ensembl
  ENSRNOG00000068571 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000096627 ENTREZGENE
  ENSRNOT00000096627.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro 7TM_GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_supfam UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
KEGG Report rno:406024 UniProtKB/TrEMBL
NCBI Gene 406024 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PhenoGen Or9s23 PhenoGen
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000047997 RatGTEx
  ENSRNOG00000068571 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A6JQU8 ENTREZGENE, UniProtKB/TrEMBL
  G3V9E6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-08-16 Or9s23  olfactory receptor family 9 subfamily S member 23  Olr1347  olfactory receptor 1347  Symbol and Name Changed 1299863 APPROVED
2005-12-06 Olr1347  olfactory receptor 1347  Olr1347_predicted  olfactory receptor 1347 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-02-04 Olr1347_predicted  olfactory receptor 1347 (predicted)      Symbol and Name status set to approved 70820 APPROVED