Septin9 (septin 9) - Rat Genome Database
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Gene: Septin9 (septin 9) Mus musculus
Analyze
Symbol: Septin9
Name: septin 9
RGD ID: 1332581
MGI Page MGI
Description: Predicted to have GTPase activity and molecular adaptor activity. Predicted to be involved in cellular protein localization; cytoskeleton-dependent cytokinesis; and positive regulation of non-motile cilium assembly. Localizes to septin complex. Is expressed in several structures, including branchial arch; embryo mesenchyme; genitourinary system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in brachial plexus neuritis. Orthologous to human SEPTIN9 (septin 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 5-aza-2'-deoxycytidine; 5-fluorouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MLL septin-like fusion; Ms; Msf; MSF1; PNU; PNUTL4; Sep; Sept9; septin-9; Si; Sint1; SL3-3 integration site 1 protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,090,487 - 117,253,151 (+)NCBIGRCm39mm39
GRCm3811117,199,661 - 117,362,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,199,661 - 117,362,325 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,060,975 - 117,223,639 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611117,147,810 - 117,178,397 (+)NCBImm8
Celera11128,945,198 - 129,106,872 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10512203   PMID:10666245   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12039034   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12693553  
PMID:12819125   PMID:12893283   PMID:12904583   PMID:14610273   PMID:15489334   PMID:15741177   PMID:15782199   PMID:15840001   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693  
PMID:18809578   PMID:21267068   PMID:21677750   PMID:21725061   PMID:21824004   PMID:21831286   PMID:21873635   PMID:22072688   PMID:22575789   PMID:23644740   PMID:25921334   PMID:26496610  
PMID:26792178   PMID:27113764   PMID:27939986   PMID:28378742   PMID:30158637   PMID:31040226   PMID:32325033  


Genomics

Comparative Map Data
Septin9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,090,487 - 117,253,151 (+)NCBIGRCm39mm39
GRCm3811117,199,661 - 117,362,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,199,661 - 117,362,325 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,060,975 - 117,223,639 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611117,147,810 - 117,178,397 (+)NCBImm8
Celera11128,945,198 - 129,106,872 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1182.61NCBI
SEPTIN9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1777,280,569 - 77,500,596 (+)EnsemblGRCh38hg38GRCh38
GRCh381777,281,499 - 77,500,596 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371775,277,581 - 75,496,678 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371775,277,492 - 75,496,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361772,827,197 - 73,008,273 (+)NCBINCBI36hg18NCBI36
Build 341772,827,743 - 73,008,269NCBI
Celera1771,879,127 - 72,091,668 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1770,710,975 - 70,904,981 (+)NCBIHuRef
HuRef1770,908,680 - 70,922,066 (+)NCBIHuRef
CHM1_11775,342,249 - 75,561,442 (+)NCBICHM1_1
Septin9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210102,409,798 - 102,579,056 (+)NCBI
Rnor_6.0 Ensembl10106,264,434 - 106,348,490 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010106,208,308 - 106,340,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010105,841,829 - 105,987,909 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,343,672 - 107,479,964 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110107,358,175 - 107,494,457 (+)NCBI
Celera10101,009,659 - 101,144,045 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Septin9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,942,056 - 5,090,441 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,943,108 - 5,033,088 (-)NCBIChiLan1.0ChiLan1.0
SEPTIN9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11776,920,236 - 77,139,586 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1776,920,236 - 77,139,586 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01771,361,002 - 71,580,995 (+)NCBIMhudiblu_PPA_v0panPan3
SEPTIN9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl93,448,793 - 3,616,732 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.193,495,764 - 3,571,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Septin9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365942,213,459 - 2,286,582 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEPTIN9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl124,254,775 - 4,405,628 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1124,254,771 - 4,347,526 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2124,002,058 - 4,153,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SEPTIN9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11644,211,692 - 44,424,242 (-)NCBI
ChlSab1.1 Ensembl1644,213,623 - 44,310,524 (-)Ensembl
Septin9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248016,988,914 - 7,156,469 (+)NCBI

Position Markers
D11Mit303  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811117,238,606 - 117,238,711UniSTSGRCm38
MGSCv3711117,099,920 - 117,100,025UniSTSGRCm37
Celera11128,983,330 - 128,983,433UniSTS
Cytogenetic Map11E2UniSTS
cM Map1176.0UniSTS
Whitehead Genetic1179.8UniSTS
D11Mit303.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3811117,238,439 - 117,238,575UniSTSGRCm38
MGSCv3711117,099,753 - 117,099,889UniSTSGRCm37
Celera11128,983,163 - 128,983,299UniSTS
Cytogenetic Map11E2UniSTS
cM Map1176.0UniSTS
cM Map11 UniSTS
Whitehead_YAC11 UniSTS
Clic1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381735,058,410 - 35,058,574UniSTSGRCm38
MGSCv371735,195,355 - 35,195,519UniSTSGRCm37
Celera1738,155,095 - 38,155,259UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map17B1UniSTS
cM Map1719.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195513139122082543Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195513139122082543Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198461783122082543Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191713782122082543Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191713782122082543Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94546357118131898Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101131764122082543Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196919310122082543Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193338357122082543Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196246848122082543Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198609643122082543Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199363361122082543Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187611774121611872Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194172953118131898Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100363360120996339Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194300000119000000Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185954085119954085Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100167277122082543Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186717494120717494Mouse
15039374Adip29_madiposity 29 (mouse)1186717494120717494Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187600000126900000Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186717494120717494Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189978425122082543Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4091
Count of miRNA genes:666
Interacting mature miRNAs:823
Transcripts:ENSMUST00000019038, ENSMUST00000093907, ENSMUST00000100193, ENSMUST00000106349, ENSMUST00000106354, ENSMUST00000127383, ENSMUST00000129387, ENSMUST00000134852, ENSMUST00000153668, ENSMUST00000155331
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_017380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006533746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030246154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH011299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ250724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL611935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW538697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC094455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU148654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU612221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY035742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY772945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000019038   ⟹   ENSMUSP00000019038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,266,246 - 117,362,313 (+)Ensembl
RefSeq Acc Id: ENSMUST00000093907   ⟹   ENSMUSP00000091435
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,199,661 - 117,362,325 (+)Ensembl
RefSeq Acc Id: ENSMUST00000100193   ⟹   ENSMUSP00000097767
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,331,720 - 117,362,308 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106349   ⟹   ENSMUSP00000101956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,332,345 - 117,362,324 (+)Ensembl
RefSeq Acc Id: ENSMUST00000106354   ⟹   ENSMUSP00000101961
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,232,285 - 117,362,313 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127383   ⟹   ENSMUSP00000120065
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,326,433 - 117,356,376 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129387
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,359,360 - 117,360,866 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134852
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,353,180 - 117,356,999 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153668   ⟹   ENSMUSP00000120382
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,308,154 - 117,352,212 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155331
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl11117,332,428 - 117,361,629 (+)Ensembl
RefSeq Acc Id: NM_001113486   ⟹   NP_001106958
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,090,487 - 117,253,151 (+)NCBI
GRCm3811117,199,661 - 117,362,325 (+)ENTREZGENE
MGSCv3711117,060,975 - 117,223,639 (+)RGD
Celera11128,945,198 - 129,106,872 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001113487   ⟹   NP_001106959
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,157,072 - 117,253,151 (+)NCBI
GRCm3811117,266,246 - 117,362,325 (+)NCBI
MGSCv3711117,060,975 - 117,223,639 (+)RGD
Celera11128,945,198 - 129,106,872 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001113488   ⟹   NP_001106960
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,223,139 - 117,253,151 (+)NCBI
GRCm3811117,332,313 - 117,362,325 (+)NCBI
MGSCv3711117,060,975 - 117,223,639 (+)RGD
Celera11128,945,198 - 129,106,872 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_017380   ⟹   NP_059076
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,222,541 - 117,253,151 (+)NCBI
GRCm3811117,331,715 - 117,362,325 (+)NCBI
MGSCv3711117,060,975 - 117,223,639 (+)RGD
Celera11128,945,198 - 129,106,872 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006533744   ⟹   XP_006533807
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,122,959 - 117,253,143 (+)NCBI
GRCm3811117,231,848 - 117,362,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533745   ⟹   XP_006533808
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,222,429 - 117,253,144 (+)NCBI
GRCm3811117,331,662 - 117,362,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006533746   ⟹   XP_006533809
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,198,970 - 117,253,144 (+)NCBI
GRCm3811117,308,146 - 117,362,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246153   ⟹   XP_030102013
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,217,361 - 117,253,144 (+)NCBI
GRCm3811117,326,419 - 117,362,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030246154   ⟹   XP_030102014
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,217,855 - 117,253,144 (+)NCBI
GRCm3811117,327,029 - 117,362,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156849   ⟹   XP_036012742
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911117,222,540 - 117,253,144 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_059076   ⟸   NM_017380
- Peptide Label: isoform c
- UniProtKB: Q80UG5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001106958   ⟸   NM_001113486
- Peptide Label: isoform a
- UniProtKB: Q80UG5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001106959   ⟸   NM_001113487
- Peptide Label: isoform b
- UniProtKB: Q80UG5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001106960   ⟸   NM_001113488
- Peptide Label: isoform c
- UniProtKB: Q80UG5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533807   ⟸   XM_006533744
- Peptide Label: isoform X1
- UniProtKB: A2A6U3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006533809   ⟸   XM_006533746
- Peptide Label: isoform X2
- UniProtKB: Q80UG5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006533808   ⟸   XM_006533745
- Peptide Label: isoform X2
- UniProtKB: Q80UG5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030102013   ⟸   XM_030246153
- Peptide Label: isoform X2
RefSeq Acc Id: XP_030102014   ⟸   XM_030246154
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000091435   ⟸   ENSMUST00000093907
RefSeq Acc Id: ENSMUSP00000120065   ⟸   ENSMUST00000127383
RefSeq Acc Id: ENSMUSP00000101956   ⟸   ENSMUST00000106349
RefSeq Acc Id: ENSMUSP00000101961   ⟸   ENSMUST00000106354
RefSeq Acc Id: ENSMUSP00000097767   ⟸   ENSMUST00000100193
RefSeq Acc Id: ENSMUSP00000120382   ⟸   ENSMUST00000153668
RefSeq Acc Id: ENSMUSP00000019038   ⟸   ENSMUST00000019038
RefSeq Acc Id: XP_036012742   ⟸   XM_036156849
- Peptide Label: isoform X2
Protein Domains
Septin-type G

Promoters
RGD ID:6822059
Promoter ID:MM_KWN:10716
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Spleen
Transcripts:ENSMUST00000106352,   OTTMUST00000008737
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,186,996 - 117,187,827 (+)MPROMDB
RGD ID:6822057
Promoter ID:MM_KWN:10717
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   Brain,   Lung,   MEF_B4,   Spleen
Transcripts:NM_001113488,   NM_017380,   OTTMUST00000072874
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,193,296 - 117,193,796 (+)MPROMDB
RGD ID:8677504
Promoter ID:EPDNEW_M16783
Type:initiation region
Name:Sept9_3
Description:Mus musculus septin 9 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16784  EPDNEW_M16785  EPDNEW_M16786  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811117,199,721 - 117,199,781EPDNEW
RGD ID:6822060
Promoter ID:MM_KWN:10718
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney
Transcripts:OTTMUST00000014347
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,214,456 - 117,214,956 (+)MPROMDB
RGD ID:6822061
Promoter ID:MM_KWN:10719
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung,   MEF_B6
Transcripts:OTTMUST00000014348
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611117,219,616 - 117,220,116 (+)MPROMDB
RGD ID:8677506
Promoter ID:EPDNEW_M16784
Type:initiation region
Name:Sept9_4
Description:Mus musculus septin 9 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16783  EPDNEW_M16785  EPDNEW_M16786  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811117,266,260 - 117,266,320EPDNEW
RGD ID:8677508
Promoter ID:EPDNEW_M16785
Type:initiation region
Name:Sept9_1
Description:Mus musculus septin 9 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16783  EPDNEW_M16784  EPDNEW_M16786  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811117,331,704 - 117,331,764EPDNEW
RGD ID:8677510
Promoter ID:EPDNEW_M16786
Type:initiation region
Name:Sept9_2
Description:Mus musculus septin 9 , transcript variant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M16783  EPDNEW_M16784  EPDNEW_M16785  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811117,332,438 - 117,332,498EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1858222 AgrOrtholog
Ensembl Genes ENSMUSG00000059248 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000019038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000091435 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000097767 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000101956 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000101961 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000120065 UniProtKB/TrEMBL
  ENSMUSP00000120382 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019038 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000093907 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000100193 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000106349 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000106354 UniProtKB/TrEMBL
  ENSMUST00000127383 UniProtKB/TrEMBL
  ENSMUST00000153668 UniProtKB/TrEMBL
InterPro G_SEPTIN_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEPT9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Septin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
KEGG Report mmu:53860 UniProtKB/Swiss-Prot
MGD MGI:1858222 ENTREZGENE
NCBI Gene 53860 ENTREZGENE
PANTHER PTHR18884:SF47 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Septin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Septin9 PhenoGen
PIRSF Septin UniProtKB/TrEMBL
PROSITE G_SEPTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs small_GTP UniProtKB/TrEMBL
UniProt A2A6U3 ENTREZGENE, UniProtKB/TrEMBL
  A2A6U5_MOUSE UniProtKB/TrEMBL
  A8Y5D3_MOUSE UniProtKB/TrEMBL
  Q3TDR9_MOUSE UniProtKB/TrEMBL
  Q80UG5 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A2A6U2 UniProtKB/Swiss-Prot
  A2A6U4 UniProtKB/Swiss-Prot
  A2A6U6 UniProtKB/Swiss-Prot
  Q3URP2 UniProtKB/Swiss-Prot
  Q80TM7 UniProtKB/Swiss-Prot
  Q9QYX9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-27 Septin9  septin 9  Sept9  septin 9  Symbol and/or name change 5135510 APPROVED