U2surp (U2 snRNP-associated SURP domain containing) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: U2surp (U2 snRNP-associated SURP domain containing) Mus musculus
Analyze
Symbol: U2surp
Name: U2 snRNP-associated SURP domain containing
RGD ID: 1332539
MGI Page MGI
Description: Predicted to have RNA binding activity. Predicted to be involved in RNA processing. Predicted to localize to nucleoplasm. Is expressed in central nervous system and sensory organ. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene; carbon nanotube.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 140 kDa Ser/Arg-rich domain protein; 2610101N10Rik; AU023006; expressed sequence AU023006; Sr140; U2 snRNP-associated SURP motif-containing protein; U2-associated protein SR140
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,338,947 - 95,394,049 (-)NCBIGRCm39mm39
GRCm38995,456,894 - 95,511,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,456,898 - 95,511,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,357,313 - 95,412,415 (-)NCBIGRCm37mm9NCBIm37
MGSCv36995,270,329 - 95,321,348 (-)NCBImm8
Celera995,019,827 - 95,074,865 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273   PMID:15782199   PMID:16033648  
PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:23665500   PMID:29459677   PMID:30457570  


Genomics

Comparative Map Data
U2surp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,338,947 - 95,394,049 (-)NCBIGRCm39mm39
GRCm38995,456,894 - 95,511,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,456,898 - 95,511,996 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,357,313 - 95,412,415 (-)NCBIGRCm37mm9NCBIm37
MGSCv36995,270,329 - 95,321,348 (-)NCBImm8
Celera995,019,827 - 95,074,865 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
U2SURP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3142,964,497 - 143,060,725 (+)EnsemblGRCh38hg38GRCh38
GRCh383143,001,570 - 143,060,725 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh373142,720,366 - 142,779,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363144,203,062 - 144,262,257 (+)NCBINCBI36hg18NCBI36
Celera3141,143,870 - 141,202,968 (+)NCBI
Cytogenetic Map3q23NCBI
HuRef3140,093,023 - 140,151,897 (+)NCBIHuRef
CHM1_13142,683,499 - 142,742,425 (+)NCBICHM1_1
U2surp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08103,242,095 - 103,299,082 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,246,558 - 103,298,927 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08102,700,388 - 102,757,363 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48100,558,095 - 100,611,422 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18100,578,138 - 100,630,883 (-)NCBI
Celera895,468,620 - 95,526,050 (-)NCBICelera
Cytogenetic Map8q31NCBI
U2surp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555082,880,638 - 2,931,146 (-)NCBIChiLan1.0ChiLan1.0
U2SURP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13147,626,911 - 147,683,958 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03140,035,004 - 140,092,852 (+)NCBIMhudiblu_PPA_v0panPan3
U2SURP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2338,596,643 - 38,646,401 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12338,596,544 - 38,646,784 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
U2surp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365404,595,316 - 4,645,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
U2SURP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,704,587 - 83,759,971 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,704,501 - 83,759,800 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21391,478,493 - 91,531,522 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103241547
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,573,425 - 47,630,634 (-)NCBI
ChlSab1.1 Ensembl1547,572,403 - 47,630,611 (-)Ensembl
U2surp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473019,645,733 - 19,694,866 (+)NCBI

Position Markers
2610101N10Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map9E4UniSTS
cM Map9 UniSTS
cM Map950.11UniSTS
UniSTS:236221  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,499,679 - 95,499,881UniSTSGRCm38
MGSCv37995,400,098 - 95,400,300UniSTSGRCm37
Celera995,062,599 - 95,062,801UniSTS
Cytogenetic Map9E4UniSTS
UniSTS:236223  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,457,478 - 95,457,698UniSTSGRCm38
MGSCv37995,357,897 - 95,358,117UniSTSGRCm37
Celera995,020,411 - 95,020,631UniSTS
Cytogenetic Map9E4UniSTS
AU023006  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38995,457,632 - 95,457,736UniSTSGRCm38
MGSCv37995,358,051 - 95,358,155UniSTSGRCm37
Celera995,020,565 - 95,020,669UniSTS
Cytogenetic Map9E4UniSTS
Whitehead/MRC_RH9992.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2812
Count of miRNA genes:646
Interacting mature miRNAs:823
Transcripts:ENSMUST00000078374, ENSMUST00000079659
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001114977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001357977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_026476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030244532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029898 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK141969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000078374   ⟹   ENSMUSP00000077482
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,460,978 - 95,511,996 (-)Ensembl
RefSeq Acc Id: ENSMUST00000079659   ⟹   ENSMUSP00000078602
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,456,898 - 95,511,894 (-)Ensembl
RefSeq Acc Id: ENSMUST00000185515   ⟹   ENSMUSP00000140525
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,493,108 - 95,511,859 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186076
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,502,004 - 95,511,885 (-)Ensembl
RefSeq Acc Id: ENSMUST00000186139
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,478,028 - 95,482,244 (-)Ensembl
RefSeq Acc Id: ENSMUST00000188017
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,509,034 - 95,511,879 (-)Ensembl
RefSeq Acc Id: ENSMUST00000190019   ⟹   ENSMUSP00000140331
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,493,726 - 95,511,856 (-)Ensembl
RefSeq Acc Id: ENSMUST00000191213   ⟹   ENSMUSP00000140614
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,461,354 - 95,511,995 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217176   ⟹   ENSMUSP00000151121
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl995,461,405 - 95,511,885 (-)Ensembl
RefSeq Acc Id: NM_001114977   ⟹   NP_001108449
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,049 (-)NCBI
GRCm38995,456,894 - 95,511,996 (-)NCBI
MGSCv37995,357,313 - 95,412,415 (-)RGD
Celera995,019,827 - 95,074,865 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001357974   ⟹   NP_001344903
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,049 (-)NCBI
GRCm38995,456,894 - 95,511,996 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357975   ⟹   NP_001344904
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,049 (-)NCBI
GRCm38995,456,894 - 95,511,996 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357976   ⟹   NP_001344905
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,049 (-)NCBI
GRCm38995,456,894 - 95,511,996 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001357977   ⟹   NP_001344906
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,049 (-)NCBI
GRCm38995,456,894 - 95,511,996 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026476   ⟹   NP_080752
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,049 (-)NCBI
GRCm38995,456,894 - 95,511,996 (-)NCBI
MGSCv37995,357,313 - 95,412,415 (-)RGD
Celera995,019,827 - 95,074,865 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030244531   ⟹   XP_030100391
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,393,940 (-)NCBI
GRCm38995,456,894 - 95,511,887 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030244532   ⟹   XP_030100392
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39995,338,947 - 95,394,033 (-)NCBI
GRCm38995,456,894 - 95,511,889 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080752   ⟸   NM_026476
- Peptide Label: isoform 2
- UniProtKB: Q6NV83 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001108449   ⟸   NM_001114977
- Peptide Label: isoform 1
- UniProtKB: Q6NV83 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001344906   ⟸   NM_001357977
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001344904   ⟸   NM_001357975
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001344905   ⟸   NM_001357976
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001344903   ⟸   NM_001357974
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030100392   ⟸   XM_030244532
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030100391   ⟸   XM_030244531
- Peptide Label: isoform X1
RefSeq Acc Id: ENSMUSP00000078602   ⟸   ENSMUST00000079659
RefSeq Acc Id: ENSMUSP00000151121   ⟸   ENSMUST00000217176
RefSeq Acc Id: ENSMUSP00000140614   ⟸   ENSMUST00000191213
RefSeq Acc Id: ENSMUSP00000140525   ⟸   ENSMUST00000185515
RefSeq Acc Id: ENSMUSP00000140331   ⟸   ENSMUST00000190019
RefSeq Acc Id: ENSMUSP00000077482   ⟸   ENSMUST00000078374
Protein Domains
CID   RRM

Promoters
RGD ID:6843954
Promoter ID:MM_KWN:58392
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001114977,   NM_026476,   UC009RBD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36995,412,174 - 95,412,674 (-)MPROMDB
RGD ID:8670460
Promoter ID:EPDNEW_M13261
Type:initiation region
Name:U2surp_1
Description:Mus musculus U2 snRNP-associated SURP domain containing , transcriptvariant 6, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38995,511,885 - 95,511,945EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1915208 AgrOrtholog
Ensembl Genes ENSMUSG00000032407 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000077482 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000078602 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000140331 UniProtKB/TrEMBL
  ENSMUSP00000140525 UniProtKB/TrEMBL
  ENSMUSP00000140614 UniProtKB/TrEMBL
  ENSMUSP00000151121 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000078374 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000079659 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000185515 UniProtKB/TrEMBL
  ENSMUST00000190019 UniProtKB/TrEMBL
  ENSMUST00000191213 UniProtKB/TrEMBL
  ENSMUST00000217176 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.790 UniProtKB/Swiss-Prot
  1.25.40.90 UniProtKB/Swiss-Prot
  3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CID_dom UniProtKB/Swiss-Prot
  ENTH_VHS UniProtKB/Swiss-Prot
  mRNA_splic_Cwf21_dom UniProtKB/Swiss-Prot
  Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SR140_RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surp UniProtKB/Swiss-Prot
  SWAP/Surp_sf UniProtKB/Swiss-Prot
KEGG Report mmu:67958 UniProtKB/Swiss-Prot
MGD MGI:1915208 ENTREZGENE
NCBI Gene 67958 ENTREZGENE
Pfam CID UniProtKB/Swiss-Prot
  cwf21 UniProtKB/Swiss-Prot
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Surp UniProtKB/Swiss-Prot
PhenoGen U2surp PhenoGen
PROSITE CID UniProtKB/Swiss-Prot
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SURP UniProtKB/Swiss-Prot
SMART cwf21 UniProtKB/Swiss-Prot
  RPR UniProtKB/Swiss-Prot
  RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWAP UniProtKB/Swiss-Prot
Superfamily-SCOP SSF109905 UniProtKB/Swiss-Prot
  SSF48464 UniProtKB/Swiss-Prot
  SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.292742 ENTREZGENE
  Mm.392755 ENTREZGENE
UniProt A0A087WQT2_MOUSE UniProtKB/TrEMBL
  A0A087WR93_MOUSE UniProtKB/TrEMBL
  A0A087WRG2_MOUSE UniProtKB/TrEMBL
  Q6NV83 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9QK93 UniProtKB/Swiss-Prot
  Q9CSW7 UniProtKB/Swiss-Prot
  Q9CT00 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 U2surp  U2 snRNP-associated SURP domain containing  AU023006  expressed sequence AU023006  Data Merged 737654 PROVISIONAL
2012-09-19 U2surp  U2 snRNP-associated SURP domain containing  2610101N10Rik  RIKEN cDNA 2610101N10 gene  Symbol and/or name change 5135510 APPROVED