6430571L13Rik (RIKEN cDNA 6430571L13 gene) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: 6430571L13Rik (RIKEN cDNA 6430571L13 gene) Mus musculus
Analyze
Symbol: 6430571L13Rik
Name: RIKEN cDNA 6430571L13 gene
RGD ID: 1332538
MGI Page MGI
Description: Predicted to localize to integral component of membrane. Orthologous to human C3orf18 (chromosome 3 open reading frame 18); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine (ortholog); 6-propyl-2-thiouracil (ortholog); acrylamide (ortholog).
Type: protein-coding
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC235599; uncharacterized protein C3orf18 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,217,839 - 107,226,882 (+)NCBIGRCm39mm39
GRCm389107,340,640 - 107,349,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,340,602 - 107,352,422 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,242,971 - 107,252,014 (+)NCBIGRCm37mm9NCBIm37
MGSCv369107,198,741 - 107,207,784 (+)NCBImm8
Celera9106,946,564 - 106,955,769 (+)NCBICelera
Cytogenetic Map9F1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Comparative Map Data
6430571L13Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,217,839 - 107,226,882 (+)NCBIGRCm39mm39
GRCm389107,340,640 - 107,349,683 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,340,602 - 107,352,422 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,242,971 - 107,252,014 (+)NCBIGRCm37mm9NCBIm37
MGSCv369107,198,741 - 107,207,784 (+)NCBImm8
Celera9106,946,564 - 106,955,769 (+)NCBICelera
Cytogenetic Map9F1NCBI
C3orf18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl350,558,025 - 50,571,027 (-)EnsemblGRCh38hg38GRCh38
GRCh38350,558,025 - 50,574,835 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37350,595,456 - 50,608,458 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,570,466 - 50,580,186 (-)NCBINCBI36hg18NCBI36
Build 34350,570,466 - 50,580,186NCBI
Celera350,568,268 - 50,581,264 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef350,651,400 - 50,664,389 (-)NCBIHuRef
CHM1_1350,547,698 - 50,560,694 (-)NCBICHM1_1
RGD1307461
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.08116,094,046 - 116,104,257 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,094,851 - 116,104,664 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,451,194 - 115,460,591 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,581,375 - 112,591,068 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18112,603,000 - 112,639,212 (+)NCBI
Celera8107,322,450 - 107,331,846 (+)NCBICelera
Cytogenetic Map8q32NCBI
LOC102013757
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,339,628 - 2,348,026 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,339,628 - 2,349,324 (-)NCBIChiLan1.0ChiLan1.0
C3H3orf18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1351,720,849 - 51,730,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,720,849 - 51,730,632 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0350,483,483 - 50,493,267 (-)NCBIMhudiblu_PPA_v0panPan3
C20H3orf18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2038,803,299 - 38,808,728 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12038,801,245 - 38,811,719 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CUNH3orf18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365292,074,753 - 2,083,888 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H3orf18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1333,036,898 - 33,045,596 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11333,036,889 - 33,045,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21336,240,837 - 36,251,155 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH3orf18
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,942,833 - 11,954,839 (-)NCBI
ChlSab1.1 Ensembl2211,942,554 - 11,952,047 (-)Ensembl
CUNH3orf18
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247304,396,043 - 4,404,527 (-)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse
12910770Splic1_mspleen iron content 1 (mouse)991413879124595110Mouse
12910772Lvic6_mliver iron content 6 (mouse)991413879124595110Mouse
12910773Splic3_mspleen iron content 3 (mouse)991413879124595110Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991641084124595110Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991641084124595110Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991641084124595110Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991641084124595110Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991641084124595110Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991641084124595110Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991683173124595110Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991683173124595110Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991683173124595110Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993762590124595110Mouse
1301484Bwq6_mbody weight (mouse)Not determined993762590124595110Mouse
14746992Manh67_mmandible shape 67 (mouse)994036768124595110Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994981301112872929Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996917590124595110Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9101060861124595110Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9102000187124595110Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9102000187124595110Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103289445124595110Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103289445124595110Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103289445124595110Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:899
Count of miRNA genes:522
Interacting mature miRNAs:629
Transcripts:ENSMUST00000042581, ENSMUST00000135520
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000042581   ⟹   ENSMUSP00000047093
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,340,602 - 107,349,692 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135520
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl9107,348,130 - 107,352,422 (+)Ensembl
RefSeq Acc Id: NM_175486   ⟹   NP_780695
RefSeq Status: PREDICTED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399107,217,839 - 107,226,882 (+)NCBI
GRCm389107,340,640 - 107,349,683 (+)NCBI
MGSCv379107,242,971 - 107,252,014 (+)RGD
Celera9106,946,564 - 106,955,769 (+)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_780695   ⟸   NM_175486
- UniProtKB: Q8BGK9 (UniProtKB/Swiss-Prot),   Q14AT3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000047093   ⟸   ENSMUST00000042581

Promoters
RGD ID:8670790
Promoter ID:EPDNEW_M13420
Type:initiation region
Name:6430571L13Rik_1
Description:Mus musculus RIKEN cDNA 6430571L13 gene , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389107,340,634 - 107,340,694EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2445137 AgrOrtholog
Ensembl Genes ENSMUSG00000037977 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000047093 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000042581 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro C3orf18-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:235599 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2445137 ENTREZGENE
NCBI Gene 235599 ENTREZGENE
PANTHER PTHR15868 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 6430571L13Rik PhenoGen
UniGene Mm.71039 ENTREZGENE
UniProt CC018_MOUSE UniProtKB/Swiss-Prot
  Q14AT3 ENTREZGENE, UniProtKB/TrEMBL
  Q8BGK9 ENTREZGENE
UniProt Secondary Q8BUH0 UniProtKB/Swiss-Prot