Myod1 (myogenic differentiation 1) - Rat Genome Database
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Gene: Myod1 (myogenic differentiation 1) Mus musculus
Analyze
Symbol: Myod1
Name: myogenic differentiation 1
RGD ID: 1332500
MGI Page MGI
Description: Exhibits several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and RNA polymerase II activating transcription factor binding activity. Contributes to DNA binding activity. Involved in several processes, including cellular response to lipid; histone acetylation; and myotube differentiation. Localizes to myofibril; nuclear euchromatin; and transcription regulator complex. Is expressed in several structures, including alimentary system; branchial arch; embryo mesenchyme; limb; and musculature. Orthologous to human MYOD1 (myogenic differentiation 1); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 17beta-hydroxy-5alpha-androstan-3-one.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI503393; bHLHc; bHLHc1; MYF3; Myo; myoblast determination protein 1; MyoD; Myod-; Myod-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,025,898 - 46,028,516 (+)NCBIGRCm39mm39
GRCm38746,376,474 - 46,379,092 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,376,474 - 46,379,099 (+)EnsemblGRCm38mm10GRCm38
MGSCv37753,631,844 - 53,634,462 (+)NCBIGRCm37mm9NCBIm37
MGSCv36746,244,524 - 46,247,137 (+)NCBImm8
Celera741,849,969 - 41,852,587 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.03NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
cardiac muscle cell differentiation  (NAS)
cell differentiation  (IEA)
cellular response to estradiol stimulus  (IDA)
cellular response to glucocorticoid stimulus  (IDA)
cellular response to oxygen levels  (IDA)
cellular response to starvation  (IDA)
cellular response to tumor necrosis factor  (IDA)
histone H3 acetylation  (IDA)
histone H4 acetylation  (IDA)
multicellular organism development  (IEA)
muscle organ development  (IDA,IGI)
myoblast differentiation  (IDA)
myoblast fate determination  (IDA)
myoblast fusion  (IMP)
myotube cell development  (ISO)
myotube differentiation  (IDA)
myotube differentiation involved in skeletal muscle regeneration  (IMP)
negative regulation of chromatin binding  (IDA,IMP)
negative regulation of myoblast proliferation  (IMP)
positive regulation of binding  (IDA,IMP)
positive regulation of muscle cell differentiation  (IDA,ISO)
positive regulation of myoblast differentiation  (IBA)
positive regulation of myoblast fusion  (ISO)
positive regulation of skeletal muscle fiber development  (IBA)
positive regulation of skeletal muscle tissue regeneration  (IMP)
positive regulation of snRNA transcription by RNA polymerase II  (IMP)
positive regulation of transcription by RNA polymerase II  (IDA,IGI,IMP,ISO)
positive regulation of transcription, DNA-templated  (IDA)
regulation of alternative mRNA splicing, via spliceosome  (IDA,IMP)
regulation of gene expression  (IDA)
regulation of RNA splicing  (ISO)
regulation of transcription by RNA polymerase II  (IBA,IDA)
regulation of transcription, DNA-templated  (IEA)
response to muscle stretch  (ISO)
skeletal muscle atrophy  (ISO)
skeletal muscle cell differentiation  (IBA,IDA,IMP,NAS)
skeletal muscle fiber adaptation  (IMP)
skeletal muscle fiber development  (IMP)
skeletal muscle tissue development  (IDA,IGI,IMP,TAS)
skeletal muscle tissue regeneration  (IDA,IMP,ISO)
striated muscle cell differentiation  (IMP)

Cellular Component
chromatin  (IDA)
cytoplasm  (IDA)
euchromatin  (IDA)
myofibril  (IDA)
nucleoplasm  (ISO,TAS)
nucleus  (IDA,ISO,TAS)
transcription regulator complex  (IDA)

References

Additional References at PubMed
PMID:1303276   PMID:1309507   PMID:1311614   PMID:1315077   PMID:1324843   PMID:1330322   PMID:1347472   PMID:1348494   PMID:1374351   PMID:1406681   PMID:1618140   PMID:1618148  
PMID:1652425   PMID:1668275   PMID:1673668   PMID:1754380   PMID:1846704   PMID:1850513   PMID:1911647   PMID:1970795   PMID:1981054   PMID:1989904   PMID:2045411   PMID:2176177  
PMID:2315312   PMID:2503252   PMID:2552320   PMID:2748593   PMID:3175662   PMID:3286015   PMID:3690668   PMID:7532173   PMID:7556922   PMID:7588068   PMID:7589813   PMID:7590262  
PMID:7601470   PMID:7607707   PMID:7659522   PMID:7698755   PMID:7720554   PMID:7720572   PMID:7720708   PMID:7787235   PMID:7797078   PMID:7824267   PMID:7835903   PMID:7863329  
PMID:7929574   PMID:7940021   PMID:8001787   PMID:8020965   PMID:8026334   PMID:8034307   PMID:8035824   PMID:8076526   PMID:8095242   PMID:8095339   PMID:8125164   PMID:8136524  
PMID:8162858   PMID:8181063   PMID:8269513   PMID:8288260   PMID:8294401   PMID:8383334   PMID:8393145   PMID:8400402   PMID:8404542   PMID:8421497   PMID:8452817   PMID:8482411  
PMID:8565825   PMID:8565855   PMID:8573720   PMID:8575308   PMID:8587605   PMID:8601493   PMID:8601494   PMID:8617206   PMID:8627340   PMID:8631261   PMID:8633043   PMID:8675005  
PMID:8681797   PMID:8759016   PMID:8797820   PMID:8812484   PMID:8837770   PMID:8866021   PMID:8901056   PMID:8903733   PMID:8950513   PMID:8999959   PMID:9011744   PMID:9029156  
PMID:9039266   PMID:9050988   PMID:9060416   PMID:9061445   PMID:9076685   PMID:9094721   PMID:9106663   PMID:9118475   PMID:9172305   PMID:9184158   PMID:9216993   PMID:9226440  
PMID:9234731   PMID:9268575   PMID:9284043   PMID:9284044   PMID:9343420   PMID:9344650   PMID:9359635   PMID:9368741   PMID:9374397   PMID:9382869   PMID:9407021   PMID:9428409  
PMID:9438383   PMID:9488722   PMID:9520323   PMID:9525963   PMID:9528857   PMID:9585504   PMID:9609818   PMID:9659901   PMID:9664688   PMID:9808779   PMID:9811581   PMID:9833687  
PMID:9874799   PMID:9986734   PMID:10037786   PMID:10072440   PMID:10075840   PMID:10075844   PMID:10079229   PMID:10199981   PMID:10208749   PMID:10322110   PMID:10349636   PMID:10357902  
PMID:10392718   PMID:10403250   PMID:10439029   PMID:10457014   PMID:10508520   PMID:10512192   PMID:10556048   PMID:10590474   PMID:10603349   PMID:10603357   PMID:10635459   PMID:10652346  
PMID:10656756   PMID:10669094   PMID:10694423   PMID:10725239   PMID:10733231   PMID:10751147   PMID:10794165   PMID:10804168   PMID:10926754   PMID:10974667   PMID:10985858   PMID:11036096  
PMID:11042159   PMID:11044626   PMID:11060232   PMID:11066097   PMID:11076861   PMID:11171399   PMID:11201041   PMID:11217851   PMID:11285237   PMID:11447261   PMID:11455436   PMID:11458388  
PMID:11493522   PMID:11525743   PMID:11532390   PMID:11562355   PMID:11570822   PMID:11684023   PMID:11700944   PMID:11711431   PMID:11714687   PMID:11718554   PMID:11784080   PMID:11809751  
PMID:11819203   PMID:11839816   PMID:11931766   PMID:11940648   PMID:11969267   PMID:12015303   PMID:12023284   PMID:12032356   PMID:12037571   PMID:12037670   PMID:12115029   PMID:12135755  
PMID:12162885   PMID:12167713   PMID:12184991   PMID:12242286   PMID:12244043   PMID:12372284   PMID:12415271   PMID:12421714   PMID:12427866   PMID:12441290   PMID:12441295   PMID:12466851  
PMID:12477932   PMID:12485625   PMID:12486129   PMID:12493912   PMID:12619134   PMID:12657651   PMID:12665587   PMID:12668636   PMID:12694204   PMID:12705871   PMID:12782625   PMID:12798290  
PMID:12802082   PMID:12812790   PMID:12832540   PMID:12861012   PMID:12878168   PMID:12887892   PMID:12895031   PMID:12941952   PMID:12948444   PMID:14499644   PMID:14504233   PMID:14517256  
PMID:14595115   PMID:14623241   PMID:14660660   PMID:14667415   PMID:14681479   PMID:14706073   PMID:14732408   PMID:14749395   PMID:14754880   PMID:14762206   PMID:14769817   PMID:15020674  
PMID:15075292   PMID:15132998   PMID:15138500   PMID:15149596   PMID:15169898   PMID:15173318   PMID:15183306   PMID:15189813   PMID:15192231   PMID:15233999   PMID:15254975   PMID:15282310  
PMID:15286803   PMID:15351717   PMID:15366017   PMID:15366018   PMID:15376315   PMID:15385444   PMID:15386014   PMID:15466486   PMID:15489287   PMID:15497153   PMID:15520228   PMID:15531760  
PMID:15563453   PMID:15568017   PMID:15572127   PMID:15604102   PMID:15618518   PMID:15634692   PMID:15653949   PMID:15706034   PMID:15719023   PMID:15729689   PMID:15739233   PMID:15743821  
PMID:15746098   PMID:15788460   PMID:15804569   PMID:15843801   PMID:15844178   PMID:15857912   PMID:15870273   PMID:15888449   PMID:15890200   PMID:15937819   PMID:15964993   PMID:16007160  
PMID:16007210   PMID:16024790   PMID:16040801   PMID:16129691   PMID:16141072   PMID:16141073   PMID:16166380   PMID:16183241   PMID:16193506   PMID:16208536   PMID:16219688   PMID:16245309  
PMID:16267055   PMID:16275751   PMID:16323077   PMID:16368089   PMID:16387292   PMID:16405903   PMID:16424906   PMID:16437161   PMID:16452092   PMID:16461349   PMID:16500621   PMID:16584724  
PMID:16598734   PMID:16638982   PMID:16705021   PMID:16797743   PMID:16847330   PMID:16858404   PMID:16901893   PMID:16951257   PMID:16952014   PMID:17011493   PMID:17028574   PMID:17030984  
PMID:17043109   PMID:17098221   PMID:17107996   PMID:17111365   PMID:17138667   PMID:17166778   PMID:17194759   PMID:17275805   PMID:17289022   PMID:17295338   PMID:17330803   PMID:17331176  
PMID:17352741   PMID:17360543   PMID:17377068   PMID:17384148   PMID:17428829   PMID:17436272   PMID:17477400   PMID:17487425   PMID:17506979   PMID:17540357   PMID:17553906   PMID:17569791  
PMID:17592144   PMID:17652354   PMID:17684061   PMID:17693064   PMID:17761773   PMID:17785180   PMID:17855775   PMID:17875930   PMID:17881575   PMID:17904117   PMID:17919536   PMID:17932502  
PMID:17940048   PMID:17940050   PMID:17959144   PMID:17961534   PMID:17965412   PMID:18047787   PMID:18065432   PMID:18078839   PMID:18215268   PMID:18243171   PMID:18253507   PMID:18255059  
PMID:18287559   PMID:18316399   PMID:18331721   PMID:18334251   PMID:18367555   PMID:18415939   PMID:18424556   PMID:18442487   PMID:18511457   PMID:18513743   PMID:18557763   PMID:18593883  
PMID:18619954   PMID:18676376   PMID:18719582   PMID:18795097   PMID:18816441   PMID:18816853   PMID:18816858   PMID:18820033   PMID:18836078   PMID:18851836   PMID:18854138   PMID:19073597  
PMID:19121967   PMID:19123137   PMID:19129464   PMID:19165827   PMID:19198652   PMID:19223199   PMID:19229108   PMID:19269978   PMID:19303854   PMID:19304887   PMID:19319192   PMID:19346403  
PMID:19384958   PMID:19443691   PMID:19460349   PMID:19464281   PMID:19520072   PMID:19521566   PMID:19531352   PMID:19553684   PMID:19641492   PMID:19646513   PMID:19698141   PMID:19712265  
PMID:19723804   PMID:19796622   PMID:19801895   PMID:19812254   PMID:19835856   PMID:19943111   PMID:19956724   PMID:20005263   PMID:20013826   PMID:20045680   PMID:20048262   PMID:20059953  
PMID:20059958   PMID:20063414   PMID:20069545   PMID:20124407   PMID:20139084   PMID:20211142   PMID:20307260   PMID:20334626   PMID:20399744   PMID:20412779   PMID:20412780   PMID:20412781  
PMID:20458750   PMID:20466877   PMID:20503368   PMID:20534536   PMID:20544915   PMID:20833138   PMID:20881014   PMID:20940258   PMID:20948544   PMID:20956306   PMID:20956382   PMID:20956524  
PMID:20978076   PMID:21035439   PMID:21041476   PMID:21078671   PMID:21127072   PMID:21131290   PMID:21143873   PMID:21177349   PMID:21211521   PMID:21212806   PMID:21254332   PMID:21256960  
PMID:21267068   PMID:21288905   PMID:21305318   PMID:21339173   PMID:21397010   PMID:21422169   PMID:21425413   PMID:21454680   PMID:21478499   PMID:21512107   PMID:21556048   PMID:21683695  
PMID:21689628   PMID:21708977   PMID:21731673   PMID:21741963   PMID:21782525   PMID:21832073   PMID:21852201   PMID:21873635   PMID:21936881   PMID:21985497   PMID:21989910   PMID:22068056  
PMID:22076929   PMID:22079119   PMID:22147266   PMID:22174917   PMID:22192089   PMID:22210883   PMID:22215600   PMID:22228095   PMID:22242125   PMID:22279050   PMID:22298038   PMID:22315423  
PMID:22318627   PMID:22333916   PMID:22351927   PMID:22358842   PMID:22362755   PMID:22431088   PMID:22438570   PMID:22460713   PMID:22522309   PMID:22569126   PMID:22613845   PMID:22621191  
PMID:22638570   PMID:22666383   PMID:22673621   PMID:22723526   PMID:22723710   PMID:22736793   PMID:22740650   PMID:22768305   PMID:22771117   PMID:22819676   PMID:22848585   PMID:22859371  
PMID:22940113   PMID:22983009   PMID:22987639   PMID:22987640   PMID:23034633   PMID:23079662   PMID:23112163   PMID:23192345   PMID:23249738   PMID:23266826   PMID:23406902   PMID:23438194  
PMID:23460641   PMID:23477786   PMID:23650549   PMID:23671652   PMID:23717575   PMID:23785297   PMID:23794713   PMID:23840772   PMID:23868259   PMID:23907538   PMID:23928680   PMID:23933088  
PMID:23946446   PMID:23969310   PMID:23987512   PMID:23993744   PMID:24019467   PMID:24055173   PMID:24056763   PMID:24074615   PMID:24092238   PMID:24239359   PMID:24301466   PMID:24349514  
PMID:24357723   PMID:24361185   PMID:24394376   PMID:24440912   PMID:24472550   PMID:24613379   PMID:24671706   PMID:24703692   PMID:24703953   PMID:24705356   PMID:24742196   PMID:24760765  
PMID:24844572   PMID:24912677   PMID:24927569   PMID:24942009   PMID:25002401   PMID:25005473   PMID:25006242   PMID:25055037   PMID:25069613   PMID:25085416   PMID:25087979   PMID:25111334  
PMID:25130140   PMID:25197048   PMID:25217815   PMID:25220152   PMID:25224227   PMID:25236433   PMID:25329411   PMID:25403490   PMID:25452432   PMID:25482443   PMID:25490265   PMID:25490270  
PMID:25534856   PMID:25605943   PMID:25640239   PMID:25715398   PMID:25737281   PMID:25774500   PMID:25801030   PMID:25807280   PMID:25848030   PMID:26074812   PMID:26149774   PMID:26229056  
PMID:26238020   PMID:26275053   PMID:26387456   PMID:26387956   PMID:26393505   PMID:26468207   PMID:26499038   PMID:26562264   PMID:26658965   PMID:26669898   PMID:26688546   PMID:26801181  
PMID:26839363   PMID:26880551   PMID:26881702   PMID:26902638   PMID:26906734   PMID:26951610   PMID:26954549   PMID:26963625   PMID:26969076   PMID:27120339   PMID:27166947   PMID:27185876  
PMID:27302134   PMID:27349543   PMID:27705798   PMID:27743478   PMID:27798115   PMID:27823936   PMID:27880908   PMID:27906130   PMID:27920252   PMID:27930960   PMID:27977683   PMID:27993983  
PMID:28091529   PMID:28117277   PMID:28118982   PMID:28228264   PMID:28286175   PMID:28336234   PMID:28351977   PMID:28438836   PMID:28569745   PMID:28600496   PMID:28607151   PMID:28607928  
PMID:28609469   PMID:28637957   PMID:28827394   PMID:28865032   PMID:28878038   PMID:28918507   PMID:28919111   PMID:28927261   PMID:28956216   PMID:28973166   PMID:28981706   PMID:28982687  
PMID:29073096   PMID:29084951   PMID:29097153   PMID:29158520   PMID:29166613   PMID:29187383   PMID:29231808   PMID:29241530   PMID:29273440   PMID:29316425   PMID:29328071   PMID:29343749  
PMID:29396429   PMID:29449644   PMID:29478898   PMID:29483576   PMID:29543863   PMID:29555813   PMID:29679560   PMID:29768404   PMID:29882512   PMID:30016497   PMID:30037979   PMID:30206360  
PMID:30225906   PMID:30237319   PMID:30389854   PMID:30415659   PMID:30429366   PMID:30511745   PMID:30568302   PMID:30683662   PMID:30789342   PMID:30791960   PMID:30858352   PMID:30862660  
PMID:30872276   PMID:30964448   PMID:30996264   PMID:31138662   PMID:31353205   PMID:31393265   PMID:31433978   PMID:31519520   PMID:31519691   PMID:31535973   PMID:31591561   PMID:31647919  
PMID:31685980   PMID:31693883   PMID:31719045   PMID:31736098   PMID:31857580   PMID:32014863   PMID:32051546   PMID:32094117   PMID:32160556   PMID:32193486   PMID:32231311   PMID:32314958  
PMID:32768399   PMID:33093635   PMID:33201874  


Genomics

Comparative Map Data
Myod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,025,898 - 46,028,516 (+)NCBIGRCm39mm39
GRCm38746,376,474 - 46,379,092 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,376,474 - 46,379,099 (+)EnsemblGRCm38mm10GRCm38
MGSCv37753,631,844 - 53,634,462 (+)NCBIGRCm37mm9NCBIm37
MGSCv36746,244,524 - 46,247,137 (+)NCBImm8
Celera741,849,969 - 41,852,587 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.03NCBI
MYOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1117,719,571 - 17,722,136 (+)EnsemblGRCh38hg38GRCh38
GRCh381117,719,571 - 17,722,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371117,741,118 - 17,743,683 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371117,741,110 - 17,743,678 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,697,686 - 17,700,254 (+)NCBINCBI36hg18NCBI36
Build 341117,697,734 - 17,700,254NCBI
Celera1117,873,623 - 17,876,191 (+)NCBI
Cytogenetic Map11p15.1NCBI
HuRef1117,425,110 - 17,427,678 (+)NCBIHuRef
CHM1_11117,740,837 - 17,743,405 (+)NCBICHM1_1
Myod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2196,884,864 - 96,887,574 (+)NCBI
Rnor_6.0 Ensembl1102,396,538 - 102,399,248 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01102,396,538 - 102,399,248 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01103,481,604 - 103,484,314 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4196,910,190 - 96,912,900 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1196,988,300 - 96,991,011 (+)NCBI
Celera191,133,211 - 91,135,921 (+)NCBICelera
Cytogenetic Map1q22NCBI
Myod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541432,523,924 - 32,526,674 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541432,523,959 - 32,526,575 (+)NCBIChiLan1.0ChiLan1.0
MYOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11117,456,124 - 17,458,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1117,456,124 - 17,458,690 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01117,772,317 - 17,774,884 (+)NCBIMhudiblu_PPA_v0panPan3
MYOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2140,258,027 - 40,259,712 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12140,257,792 - 40,260,461 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Myod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365281,407,187 - 1,409,683 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl241,415,735 - 41,425,234 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1241,422,522 - 41,424,236 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2244,483,015 - 44,484,730 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103239432
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1147,250,927 - 47,254,572 (-)NCBI
ChlSab1.1 Ensembl147,251,551 - 47,253,284 (-)Ensembl
Myod1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247669,345,390 - 9,347,985 (+)NCBI

Position Markers
AI503393  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,378,759 - 46,378,877UniSTSGRCm38
MGSCv37753,634,129 - 53,634,247UniSTSGRCm37
Celera741,852,254 - 41,852,372UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
Whitehead/MRC_RH7580.96UniSTS
Myod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37753,632,524 - 53,633,777UniSTSGRCm37
MGSCv37753,632,522 - 53,633,777UniSTSGRCm37
MGSCv37753,631,861 - 53,632,250UniSTSGRCm37
Celera741,849,986 - 41,850,375UniSTS
Celera741,850,649 - 41,851,902UniSTS
Celera741,850,647 - 41,851,902UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
cM Map723.5UniSTS
PMC133998P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,377,038 - 46,377,806UniSTSGRCm38
MGSCv37753,632,408 - 53,633,176UniSTSGRCm37
Celera741,850,533 - 41,851,301UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
PMC151607P3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,378,761 - 46,379,087UniSTSGRCm38
MGSCv37753,634,131 - 53,634,457UniSTSGRCm37
Celera741,852,256 - 41,852,582UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
PMC162217P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,378,487 - 46,379,008UniSTSGRCm38
MGSCv37753,633,857 - 53,634,378UniSTSGRCm37
Celera741,851,982 - 41,852,503UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
PMC86965P5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,376,360 - 46,376,514UniSTSGRCm38
MGSCv37753,631,730 - 53,631,884UniSTSGRCm37
Celera741,849,855 - 41,850,009UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
Myod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
Myod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7B4UniSTS
Myod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,377,152 - 46,378,407UniSTSGRCm38
MGSCv37753,632,522 - 53,633,777UniSTSGRCm37
Celera741,850,647 - 41,851,902UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
Myod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,376,491 - 46,376,880UniSTSGRCm38
MGSCv37753,631,861 - 53,632,250UniSTSGRCm37
Celera741,849,986 - 41,850,375UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS
Myod1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38746,377,154 - 46,378,407UniSTSGRCm38
MGSCv37753,632,524 - 53,633,777UniSTSGRCm37
Celera741,850,649 - 41,851,902UniSTS
Cytogenetic Map7B4UniSTS
cM Map723.5UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7346321287493512Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360000072900000Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76500000133900000Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71278145246781452Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71278145246781452Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1333306047333196Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71343577947435779Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71360000047700000Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71690336849509583Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718994869119886157Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719413473142366067Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71958059053580679Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined72014282554142942Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72302446357024609Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72323914857239292Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72341710757417107Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72719819161202351Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72789112561891125Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3033306081485905Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730500000109400000Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73206509766065329Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73274478466744933Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3379830258499217Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3379830258499217Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3379830258499217Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3379830258499217Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73379830258499217Mouse
1357731Lvrq6_mliver weight QTL 6 (mouse)Not determined73379830258499217Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73379830258499217Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73379830258499217Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73379830258499217Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73440327768403475Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73450000051500000Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73466713968667295Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73479812168798270Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73658059092745138Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736580590116817642Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73760000072400000Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73760000087400000Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73824163872241834Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73877180072771936Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined740024463103860803Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74149907275499217Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74149907275499217Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745512542119094307Mouse
12880417V125Dq5_mvitamin D active form serum level QTL 5 (mouse)74560000079600000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:444
Count of miRNA genes:314
Interacting mature miRNAs:347
Transcripts:ENSMUST00000072514
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000072514   ⟹   ENSMUSP00000072330
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl746,376,474 - 46,379,099 (+)Ensembl
RefSeq Acc Id: NM_010866   ⟹   NP_034996
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39746,025,898 - 46,028,516 (+)NCBI
GRCm38746,376,474 - 46,379,092 (+)ENTREZGENE
MGSCv37753,631,844 - 53,634,462 (+)RGD
Celera741,849,969 - 41,852,587 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034996   ⟸   NM_010866
- UniProtKB: P10085 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000072330   ⟸   ENSMUST00000072514
Protein Domains
bHLH

Promoters
RGD ID:8664121
Promoter ID:EPDNEW_M10091
Type:multiple initiation site
Name:Myod1_1
Description:Mus musculus myogenic differentiation 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38746,376,474 - 46,376,534EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97275 AgrOrtholog
Ensembl Genes ENSMUSG00000009471 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000072330 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000072514 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot
InterPro Basic UniProtKB/Swiss-Prot
  bHLH_dom UniProtKB/Swiss-Prot
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot
  Myf5 UniProtKB/Swiss-Prot
  Myogenic_factor UniProtKB/Swiss-Prot
KEGG Report mmu:17927 UniProtKB/Swiss-Prot
MGD MGI:97275 ENTREZGENE
NCBI Gene 17927 ENTREZGENE
PANTHER PTHR11534 UniProtKB/Swiss-Prot
Pfam Basic UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
  Myf5 UniProtKB/Swiss-Prot
PhenoGen Myod1 PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot
SMART BASIC UniProtKB/Swiss-Prot
  HLH UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot
UniProt MYOD1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8C6B1 UniProtKB/Swiss-Prot