Rtca (RNA 3'-terminal phosphate cyclase) - Rat Genome Database

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Gene: Rtca (RNA 3'-terminal phosphate cyclase) Mus musculus
Analyze
Symbol: Rtca
Name: RNA 3'-terminal phosphate cyclase
RGD ID: 1332441
MGI Page MGI
Description: Predicted to enable RNA-3'-phosphate cyclase activity. Involved in negative regulation of optical nerve axon regeneration. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Is expressed in dorsal root ganglion; retina; and retina ganglion cell layer. Orthologous to human RTCA (RNA 3'-terminal phosphate cyclase).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2310009A18Rik; AI450277; MGC102342; RNA cyclase; RNA terminal phosphate cyclase domain 1; RNA terminal phosphate cyclase domain-containing protein 1; RNA-3'-phosphate cyclase; RPC; Rtcd; Rtcd1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,282,612 - 116,301,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,282,612 - 116,301,857 (-)EnsemblGRCm39 Ensembl
GRCm383116,488,963 - 116,508,203 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,488,963 - 116,508,208 (-)EnsemblGRCm38mm10GRCm38
MGSCv373116,191,881 - 116,211,093 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,480,970 - 116,500,114 (-)NCBIMGSCv36mm8
Celera3122,915,925 - 122,935,107 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleoplasm  (ISO)
nucleus  (IBA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21873635   PMID:25961792   PMID:27899360  
PMID:28378742   PMID:30196744   PMID:31919191   PMID:36114006   PMID:38187761  


Genomics

Comparative Map Data
Rtca
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393116,282,612 - 116,301,852 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3116,282,612 - 116,301,857 (-)EnsemblGRCm39 Ensembl
GRCm383116,488,963 - 116,508,203 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3116,488,963 - 116,508,208 (-)EnsemblGRCm38mm10GRCm38
MGSCv373116,191,881 - 116,211,093 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363116,480,970 - 116,500,114 (-)NCBIMGSCv36mm8
Celera3122,915,925 - 122,935,107 (-)NCBICelera
Cytogenetic Map3G1NCBI
cM Map350.35NCBI
RTCA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381100,266,216 - 100,292,769 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1100,266,216 - 100,292,769 (+)EnsemblGRCh38hg38GRCh38
GRCh371100,731,772 - 100,758,325 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361100,504,351 - 100,529,915 (+)NCBINCBI36Build 36hg18NCBI36
Build 341100,443,783 - 100,469,348NCBI
Celera198,988,517 - 99,014,945 (+)NCBICelera
Cytogenetic Map1p21.2NCBI
HuRef198,855,137 - 98,881,932 (+)NCBIHuRef
CHM1_11100,847,904 - 100,874,505 (+)NCBICHM1_1
T2T-CHM13v2.01100,114,188 - 100,140,722 (+)NCBIT2T-CHM13v2.0
Rtca
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82207,140,090 - 207,161,366 (-)NCBIGRCr8
mRatBN7.22204,455,175 - 204,476,450 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2204,455,175 - 204,476,460 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2212,111,896 - 212,132,961 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02210,020,792 - 210,042,080 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02204,837,870 - 204,859,159 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02219,537,213 - 219,558,489 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2219,537,206 - 219,558,675 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02237,659,375 - 237,680,651 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42212,732,742 - 212,754,018 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12212,695,496 - 212,716,772 (-)NCBI
Celera2196,948,074 - 196,969,152 (-)NCBICelera
Cytogenetic Map2q42NCBI
Rtca
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554355,018,944 - 5,041,700 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554355,019,654 - 5,041,611 (+)NCBIChiLan1.0ChiLan1.0
RTCA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,736,871 - 126,762,473 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11125,894,847 - 125,920,505 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01102,923,400 - 102,948,949 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11101,638,174 - 101,663,715 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1101,638,173 - 101,663,715 (+)Ensemblpanpan1.1panPan2
RTCA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1649,711,984 - 49,759,977 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl649,718,271 - 49,747,389 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha652,376,703 - 52,431,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0650,053,123 - 50,107,729 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl650,065,085 - 50,095,212 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1649,744,691 - 49,799,467 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0649,723,410 - 49,778,255 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0650,153,396 - 50,208,146 (-)NCBIUU_Cfam_GSD_1.0
Rtca
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058110,589,749 - 110,616,665 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936748394,714 - 420,214 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RTCA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4117,852,766 - 117,875,684 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14117,852,776 - 117,875,630 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24129,473,161 - 129,503,353 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RTCA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12033,047,610 - 33,072,478 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2033,047,476 - 33,073,179 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603824,984,873 - 25,009,726 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rtca
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248573,144,694 - 3,172,433 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248573,138,578 - 3,176,170 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rtca
577 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:651
Count of miRNA genes:378
Interacting mature miRNAs:426
Transcripts:ENSMUST00000000348, ENSMUST00000124486, ENSMUST00000140677, ENSMUST00000143425, ENSMUST00000153005
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884436Zlq3_mzygomatic length QTL 3, 10 week (mouse)33265060142405761Mouse
13207570Tcq12_mtotal cholesterol QTL 12 (mouse)316504164130163649Mouse
26884422Cvht7_mcranial vault height 7, 16 week (mouse)328954149118893649Mouse
1302056Orgwq4_morgan weight QTL 4 (mouse)Not determined330067588147304689Mouse
1301705Sles3_msystemic lupus erythmatosus suppressor 3 (mouse)Not determined337174862143353183Mouse
26884382Bzwq1_mbi-zygomatic width QTL 1, 5 week (mouse)352207421137205761Mouse
25314313Syncl1_msynaptonemal complex length 1 (mouse)367907333128393649Mouse
11041900Lmr11a_mleishmaniasis resistance 11a (mouse)383463991117464137Mouse
11039510Ltpr3d_mLeishmania tropica response 3d (mouse)383463991117464137Mouse
11039511Ltpr3c_mLeishmania tropica response 3c (mouse)383463991117464137Mouse
11039507Ltpr3g_mLeishmania tropica response 3g (mouse)383463991117464137Mouse
11039508Ltpr3f_mLeishmania tropica response 3f (mouse)383463991117464137Mouse
11039509Ltpr3e_mLeishmania tropica response 3e (mouse)383463991117464137Mouse
11039512Ltpr3b_mLeishmania tropica response 3b (mouse)383463991117464137Mouse
1301272Cfsw1_mcystic fibrosis survival to weaning 1 (mouse)Not determined383882912117883044Mouse
4142099Cq3_mcholesterol QTL 3 (mouse)Not determined384888918118889067Mouse
14746984Manh54_mmandible shape 54 (mouse)385289152119289152Mouse
1357583Sle18_msystematic lupus erythematosus susceptibility 18 (mouse)Not determined387208904125316236Mouse
12738440Twq3_mtestis weight QTL 3 (mouse)387228015121228015Mouse
4142178Ctrq2_mC. trachomatis resistance QTL 2 (mouse)Not determined389139967137453008Mouse
10766455Sle22_msystematic lupus erythematosus susceptibility 22 (mouse)390376936124377072Mouse
14747001Mancz4_mmandible centroid size 4 (mouse)390378017124378017Mouse
1302052Etohcta4_methanol conditioned taste aversion 4 (mouse)Not determined391000105125008748Mouse
1301349Pgia26_mproteoglycan induced arthritis 26 (mouse)Not determined392251533126251650Mouse
27226732Tibmd3_mtibia midshaft diameter 3, 10 week (mouse)396607316147805636Mouse
10043955Wt10q4_mbody weight, 10 weeks, QTL 4 (mouse)Not determined398624041132624197Mouse
11533920Mvb3_mmodifier of vibrator 3 (mouse)398635284132635383Mouse
12792984Modn1_mmodifier of Dstn neovascularization 1 (mouse)398635284132635383Mouse
1302114Tbs1_mtuberculosis severity 1 (mouse)Not determined398924105132924250Mouse
1300752Ap6q_malcohol preference 6 QTL (mouse)Not determined3100372912147045722Mouse
26884419Bzwq6_mbi-zygomatic width QTL 6, 10 week (mouse)3100607316137205761Mouse
27226733Tibmd6_mtibia midshaft diameter 6, 16 week (mouse)3101307316149805637Mouse
1301805Mors2_mmodifier of obesity related sterility 2 (mouse)Not determined3103482659137482783Mouse
8655599Cia5c_mcollagen induced arthritis QTL 5c (mouse)Not determined3107376936125316237Mouse
1302093Orgwq5_morgan weight QTL 5 (mouse)Not determined3107376936147304689Mouse
1300619Cdcs1_mcytokine deficiency colitis susceptibility 1 (mouse)Not determined3109834882143835005Mouse
12910793Pwbwq7_mpost-weaning body weight QTL 7 (mouse)3110084357135715812Mouse
12910796Pwbwq6_mpost-weaning body weight QTL 6 (mouse)3110084357135715812Mouse
12910815Ogrq1_moverall growth rate QTL 1 (mouse)3110084357135715812Mouse
1301381Bomb1_mbone marrow pre-B 1 (mouse)Not determined3111133243145133417Mouse
1301100Bdt2_mbone density traits 2 (mouse)Not determined3114736617148736784Mouse

Markers in Region
AI450277  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,489,193 - 116,489,340UniSTSGRCm38
MGSCv373116,192,111 - 116,192,258UniSTSGRCm37
Celera3122,916,155 - 122,916,302UniSTS
Cytogenetic Map3G1UniSTS
Whitehead/MRC_RH31355.06UniSTS
UniSTS:234811  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,509,612 - 116,509,843UniSTSGRCm38
MGSCv373116,212,530 - 116,212,761UniSTSGRCm37
Celera3122,936,544 - 122,936,775UniSTS
Cytogenetic Map3G1UniSTS
AU022586  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm383116,509,733 - 116,509,935UniSTSGRCm38
MGSCv373116,212,651 - 116,212,853UniSTSGRCm37
Celera3122,936,665 - 122,936,867UniSTS
Cytogenetic Map3G1UniSTS
cM Map3 UniSTS
Whitehead/MRC_RH31354.95UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_025517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006501884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252753 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001783733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC025622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK002543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK009245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207601 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK212568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC042473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC051062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC090403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM899781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY499693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000000348   ⟹   ENSMUSP00000000348
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,282,612 - 116,301,857 (-)Ensembl
GRCm38.p6 Ensembl3116,488,963 - 116,508,208 (-)Ensembl
RefSeq Acc Id: ENSMUST00000124486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,282,889 - 116,289,614 (-)Ensembl
GRCm38.p6 Ensembl3116,489,240 - 116,495,965 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140677   ⟹   ENSMUSP00000117610
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,287,800 - 116,301,673 (-)Ensembl
GRCm38.p6 Ensembl3116,494,151 - 116,508,024 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143425   ⟹   ENSMUSP00000121357
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,293,195 - 116,301,782 (-)Ensembl
GRCm38.p6 Ensembl3116,499,546 - 116,508,133 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153005   ⟹   ENSMUSP00000119463
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl3116,289,340 - 116,301,714 (-)Ensembl
GRCm38.p6 Ensembl3116,495,691 - 116,508,065 (-)Ensembl
RefSeq Acc Id: NM_025517   ⟹   NP_079793
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,282,612 - 116,301,824 (-)NCBI
GRCm383116,488,963 - 116,508,175 (-)NCBI
MGSCv373116,191,881 - 116,211,093 (-)RGD
Celera3122,915,925 - 122,935,107 (-)RGD
cM Map3 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006501883   ⟹   XP_006501946
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,282,612 - 116,301,748 (-)NCBI
GRCm383116,488,963 - 116,508,099 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006501884   ⟹   XP_006501947
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,282,612 - 116,301,847 (-)NCBI
GRCm383116,488,963 - 116,508,198 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030252753   ⟹   XP_030108613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,282,612 - 116,301,739 (-)NCBI
GRCm383116,488,963 - 116,508,085 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001783733
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm393116,282,612 - 116,301,852 (-)NCBI
GRCm383116,488,963 - 116,508,203 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_079793   ⟸   NM_025517
- UniProtKB: Q3TVV2 (UniProtKB/Swiss-Prot),   Q9D7H3 (UniProtKB/Swiss-Prot),   Q3TIJ4 (UniProtKB/TrEMBL),   Q3UAE6 (UniProtKB/TrEMBL),   Q5BLJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501946   ⟸   XM_006501883
- Peptide Label: isoform X1
- UniProtKB: Q3TIJ4 (UniProtKB/TrEMBL),   Q3UAE6 (UniProtKB/TrEMBL),   Q5BLJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006501947   ⟸   XM_006501884
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_030108613   ⟸   XM_030252753
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000121357   ⟸   ENSMUST00000143425
RefSeq Acc Id: ENSMUSP00000000348   ⟸   ENSMUST00000000348
RefSeq Acc Id: ENSMUSP00000117610   ⟸   ENSMUST00000140677
RefSeq Acc Id: ENSMUSP00000119463   ⟸   ENSMUST00000153005
Protein Domains
RNA 3'-terminal phosphate cyclase   RNA 3'-terminal phosphate cyclase insert

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D7H3-F1-model_v2 AlphaFold Q9D7H3 1-366 view protein structure

Promoters
RGD ID:6833488
Promoter ID:MM_KWN:35888
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC008RCC.1,   UC008RCE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363116,192,151 - 116,194,582 (-)MPROMDB
RGD ID:6834388
Promoter ID:MM_KWN:35890
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour
Transcripts:UC008RCF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363116,210,086 - 116,210,586 (-)MPROMDB
RGD ID:6834387
Promoter ID:MM_KWN:35891
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4
Transcripts:OTTMUST00000066945,   OTTMUST00000066968,   OTTMUST00000066969,   OTTMUST00000066970
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv363116,210,701 - 116,211,201 (-)MPROMDB
RGD ID:6882172
Promoter ID:EPDNEW_M4537
Type:initiation region
Name:Rtca_1
Description:Mus musculus RNA 3'-terminal phosphate cyclase , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm383116,508,085 - 116,508,145EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1913618 AgrOrtholog
Ensembl Genes ENSMUSG00000000339 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000000348 ENTREZGENE
  ENSMUST00000000348.15 UniProtKB/Swiss-Prot
  ENSMUST00000140677.8 UniProtKB/TrEMBL
  ENSMUST00000143425.2 UniProtKB/TrEMBL
  ENSMUST00000153005.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.360.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.65.10.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNA3'-term_phos_cycl_insert UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA3'_phos_cyclase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA3'_phos_cyclase_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA3'_term_phos_cyc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA3'_term_phos_cyc_type_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA3'_term_phos_cycl-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA3'P_cycl/enolpyr_Trfase_a/b UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RPTC_insert UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:66368 UniProtKB/Swiss-Prot
MGD MGI:1913618 ENTREZGENE
NCBI Gene 66368 ENTREZGENE
PANTHER PTHR11096 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11096:SF0 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RTC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RTC_insert UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Rtca PhenoGen
PIRSF RNA3'_term_phos_cycl_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE RTC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52913 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55205 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1S6GWI5_MOUSE UniProtKB/TrEMBL
  D3Z263_MOUSE UniProtKB/TrEMBL
  D6RD00_MOUSE UniProtKB/TrEMBL
  D6REI7_MOUSE UniProtKB/TrEMBL
  Q3TIJ4 ENTREZGENE, UniProtKB/TrEMBL
  Q3TVV2 ENTREZGENE
  Q3UAE6 ENTREZGENE, UniProtKB/TrEMBL
  Q5BLJ4 ENTREZGENE, UniProtKB/TrEMBL
  Q91YL8_MOUSE UniProtKB/TrEMBL
  Q9D7H3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TVV2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-25 Rtca  RNA 3'-terminal phosphate cyclase  Rtcd1  RNA terminal phosphate cyclase domain 1  Symbol and/or name change 5135510 APPROVED