Tmem175 (transmembrane protein 175) - Rat Genome Database

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Gene: Tmem175 (transmembrane protein 175) Mus musculus
Analyze
Symbol: Tmem175
Name: transmembrane protein 175
RGD ID: 1332425
MGI Page MGI
Description: Enables potassium ion leak channel activity. Involved in lysosome organization; neuron cellular homeostasis; and potassium ion transmembrane transport. Predicted to be located in endosome membrane. Predicted to be active in endosome and lysosomal membrane. Orthologous to human TMEM175 (transmembrane protein 175).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3010001K23Rik; AI504381; endosomal/lysomomal potassium channel TMEM175; endosomal/lysosomal potassium channel TMEM175; endosomal/lysosomal proton channel TMEM175; mTMEM175; potassium channel TMEM175
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,777,649 - 108,795,636 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,777,636 - 108,796,648 (+)EnsemblGRCm39 Ensembl
GRCm385108,629,779 - 108,647,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,629,770 - 108,648,782 (+)EnsemblGRCm38mm10GRCm38
MGSCv375109,058,829 - 109,076,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,870,304 - 108,887,565 (+)NCBIMGSCv36mm8
Celera5105,751,308 - 105,769,349 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endosome  (IBA,ISO)
endosome membrane  (ISO)
lysosomal membrane  (ISO)
lysosome  (IBA,ISO)
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:12477932   PMID:15489334   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21677750   PMID:21873635   PMID:22844512  
PMID:26317472   PMID:33505021   PMID:34638858   PMID:35750034   PMID:35913019  


Genomics

Comparative Map Data
Tmem175
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,777,649 - 108,795,636 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,777,636 - 108,796,648 (+)EnsemblGRCm39 Ensembl
GRCm385108,629,779 - 108,647,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,629,770 - 108,648,782 (+)EnsemblGRCm38mm10GRCm38
MGSCv375109,058,829 - 109,076,789 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365108,870,304 - 108,887,565 (+)NCBIMGSCv36mm8
Celera5105,751,308 - 105,769,349 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.24NCBI
TMEM175
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384932,460 - 958,656 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4932,387 - 958,656 (+)EnsemblGRCh38hg38GRCh38
GRCh374926,248 - 952,444 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364916,262 - 942,444 (+)NCBINCBI36Build 36hg18NCBI36
Celera4863,168 - 889,353 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef4897,477 - 923,812 (+)NCBIHuRef
CHM1_14925,472 - 952,228 (+)NCBICHM1_1
T2T-CHM13v2.04930,532 - 956,764 (+)NCBIT2T-CHM13v2.0
Tmem175
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,217,911 - 1,234,236 (-)NCBIGRCr8
mRatBN7.2141,073,410 - 1,089,764 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,073,523 - 1,089,819 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx14973,404 - 989,349 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0142,275,182 - 2,291,127 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.014971,877 - 987,822 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0142,083,745 - 2,100,006 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,083,712 - 2,100,005 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0142,078,799 - 2,095,561 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,614,529 - 1,630,636 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1141,614,529 - 1,630,636 (-)NCBI
Celera141,112,847 - 1,128,959 (-)NCBICelera
Cytogenetic Map14p22NCBI
Tmem175
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514434,285 - 453,239 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514434,283 - 453,239 (+)NCBIChiLan1.0ChiLan1.0
TMEM175
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,262,300 - 1,287,866 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,228,124 - 1,255,224 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,049,647 - 1,074,903 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14967,494 - 993,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4967,494 - 993,030 (+)Ensemblpanpan1.1panPan2
TMEM175
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1391,554,001 - 91,576,845 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl391,553,778 - 91,670,930 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha394,019,059 - 94,042,095 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0392,551,080 - 92,575,365 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl392,551,080 - 92,670,555 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1391,724,345 - 91,746,694 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0391,777,372 - 91,800,395 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0392,161,193 - 92,184,240 (-)NCBIUU_Cfam_GSD_1.0
Tmem175
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,537,401 - 68,552,335 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647722,239,093 - 22,254,439 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647722,239,093 - 22,254,028 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM175
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8297,007 - 313,972 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18295,693 - 313,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103246503
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,819,512 - 47,852,455 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,816,482 - 47,852,472 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660514,157,175 - 4,214,288 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem175
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475526,190,547 - 26,207,793 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475526,190,547 - 26,200,512 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmem175
527 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:728
Count of miRNA genes:405
Interacting mature miRNAs:444
Transcripts:ENSMUST00000063272, ENSMUST00000078323, ENSMUST00000120327, ENSMUST00000146207
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse
1357725Eae39_mexperimental allergic encephalomyelitis 39 (mouse)Not determined589418876118864028Mouse
1300968Skts4_mskin tumor susceptibility 4 (mouse)Not determined589418876124238239Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589418876146787935Mouse
11049562Lmr24f_mleishmaniasis resistance 24f (mouse)590320962124321041Mouse
1301457Cfsw2_mcystic fibrosis survival to weaning 2 (mouse)Not determined590561006124561151Mouse
1300993Hycdc_mhypercapnic duty cycle (mouse)Not determined590561006124561151Mouse
9587780Afw16_mabdominal fat weight QTL 16 (mouse)Not determined592830166126830285Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595233214129233330Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595434580129434786Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595465549129465722Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595465549129465722Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595465549129465722Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596320385130320533Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined597021753131021986Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined597021753131021986Mouse
10045978Tir10_mtrypanosome infection response 10 (mouse)Not determined598019649114021986Mouse
1301042Elmaz1_melevated maze behavior 1 (mouse)Not determined598019649116876624Mouse
1301877Bbaa3_mB.burgdorferi-associated arthritis 3 (mouse)Not determined599455285112465722Mouse
4141519Hmtb5_mhemostasis and thrombosis bleeding time 5 (mouse)Not determined99949422126882944Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100665965134665965Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100665965134665965Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101332579135332579Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101863832135864028Mouse
14746986Manh58_mmandible shape 58 (mouse)5102446283136446283Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102945037136945196Mouse
25314310Syncl4_msynaptonemal complex length 4 (mouse)5103047866115538059Mouse
25314317Sccor3_msynaptonemal complex length to mean MLH1 count ratio 3 (mouse)5104347866114738061Mouse
11528550Sluc33_msusceptibility to lung cancer 33 (mouse)5104386871120711986Mouse
1357886Diht_mdopamine-induced hypothermia (mouse)Not determined5104498738115101540Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104583688138555455Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104705939138705939Mouse
1357901Mdmsc2_mmodifier of muscularity 2 (mouse)Not determined5107561006112434786Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107906299141906412Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107906299141906412Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107906299141906412Mouse
4141139Hmtb4_mhemostasis and thrombosis rebleeding time 4 (mouse)Not determined108762509126882944Mouse

Markers in Region
AI504381  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385108,646,876 - 108,647,055UniSTSGRCm38
MGSCv375109,075,895 - 109,076,074UniSTSGRCm37
Celera5105,768,454 - 105,768,633UniSTS
Cytogenetic Map5FUniSTS
cM Map557.0UniSTS
Whitehead/MRC_RH51340.21UniSTS
UniSTS:235249  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385108,646,869 - 108,647,070UniSTSGRCm38
MGSCv375109,075,888 - 109,076,089UniSTSGRCm37
Celera5105,768,447 - 105,768,648UniSTS
Cytogenetic Map5FUniSTS
cM Map557.0UniSTS
RH135170  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm385108,646,334 - 108,646,535UniSTSGRCm38
MGSCv375109,075,353 - 109,075,554UniSTSGRCm37
Celera5105,767,912 - 105,768,113UniSTS
Cytogenetic Map5FUniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001163531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001163532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_028223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006535237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030254827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC161813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI526594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK038865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082765 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB653267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU057278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY323049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN175171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000063272   ⟹   ENSMUSP00000068607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,777,698 - 108,796,648 (+)Ensembl
GRCm38.p6 Ensembl5108,629,832 - 108,648,782 (+)Ensembl
RefSeq Acc Id: ENSMUST00000078323   ⟹   ENSMUSP00000077437
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,777,868 - 108,795,129 (+)Ensembl
GRCm38.p6 Ensembl5108,630,002 - 108,647,263 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120327   ⟹   ENSMUSP00000112780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,777,875 - 108,794,537 (+)Ensembl
GRCm38.p6 Ensembl5108,630,009 - 108,646,671 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146207   ⟹   ENSMUSP00000143596
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,777,636 - 108,791,896 (+)Ensembl
GRCm38.p6 Ensembl5108,629,770 - 108,644,030 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,792,191 - 108,792,982 (+)Ensembl
GRCm38.p6 Ensembl5108,644,325 - 108,645,116 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl5108,789,546 - 108,791,061 (+)Ensembl
GRCm38.p6 Ensembl5108,641,680 - 108,643,195 (+)Ensembl
RefSeq Acc Id: NM_001163531   ⟹   NP_001157003
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,676 - 108,795,636 (+)NCBI
GRCm385108,629,810 - 108,647,770 (+)NCBI
MGSCv375109,058,829 - 109,076,789 (+)RGD
Celera5105,751,308 - 105,769,349 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001163532   ⟹   NP_001157004
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,676 - 108,795,636 (+)NCBI
GRCm385108,629,810 - 108,647,770 (+)NCBI
MGSCv375109,058,829 - 109,076,789 (+)RGD
Celera5105,751,308 - 105,769,349 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001359423   ⟹   NP_001346352
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,676 - 108,795,636 (+)NCBI
GRCm385108,629,810 - 108,647,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359426   ⟹   NP_001346355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,676 - 108,795,636 (+)NCBI
GRCm385108,629,810 - 108,647,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001359427   ⟹   NP_001346356
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,676 - 108,795,636 (+)NCBI
GRCm385108,629,810 - 108,647,770 (+)NCBI
Sequence:
RefSeq Acc Id: NM_028223   ⟹   NP_082499
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,676 - 108,795,636 (+)NCBI
GRCm385108,629,810 - 108,647,770 (+)NCBI
MGSCv375109,058,829 - 109,076,789 (+)RGD
Celera5105,751,308 - 105,769,349 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006535230   ⟹   XP_006535293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
GRCm385108,629,779 - 108,647,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535232   ⟹   XP_006535295
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
GRCm385108,629,779 - 108,647,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535233   ⟹   XP_006535296
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
GRCm385108,629,779 - 108,647,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535236   ⟹   XP_006535299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,787,358 - 108,795,126 (+)NCBI
GRCm385108,639,492 - 108,647,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006535237   ⟹   XP_006535300
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,792,968 (+)NCBI
GRCm385108,629,779 - 108,644,550 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254826   ⟹   XP_030110686
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
GRCm385108,629,780 - 108,647,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030254827   ⟹   XP_030110687
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
GRCm385108,629,779 - 108,647,260 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165523   ⟹   XP_036021416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165524   ⟹   XP_036021417
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165526   ⟹   XP_036021419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,126 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942569
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395108,777,649 - 108,795,122 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001157003 (Get FASTA)   NCBI Sequence Viewer  
  NP_001157004 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346352 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346355 (Get FASTA)   NCBI Sequence Viewer  
  NP_001346356 (Get FASTA)   NCBI Sequence Viewer  
  NP_082499 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535293 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535295 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535296 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535299 (Get FASTA)   NCBI Sequence Viewer  
  XP_006535300 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110686 (Get FASTA)   NCBI Sequence Viewer  
  XP_030110687 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021416 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021417 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021419 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH05542 (Get FASTA)   NCBI Sequence Viewer  
  BAB29031 (Get FASTA)   NCBI Sequence Viewer  
  BAC28761 (Get FASTA)   NCBI Sequence Viewer  
  BAC30154 (Get FASTA)   NCBI Sequence Viewer  
  BAC34004 (Get FASTA)   NCBI Sequence Viewer  
  BAE41678 (Get FASTA)   NCBI Sequence Viewer  
  EDL20095 (Get FASTA)   NCBI Sequence Viewer  
  EDL20096 (Get FASTA)   NCBI Sequence Viewer  
  EDL20097 (Get FASTA)   NCBI Sequence Viewer  
  EDL20098 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000068607
  ENSMUSP00000068607.7
  ENSMUSP00000077437
  ENSMUSP00000077437.7
  ENSMUSP00000112780
  ENSMUSP00000112780.2
  ENSMUSP00000143596.2
GenBank Protein Q9CXY1 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_082499   ⟸   NM_028223
- Peptide Label: isoform 1
- UniProtKB: Q3TDC4 (UniProtKB/Swiss-Prot),   Q99K00 (UniProtKB/Swiss-Prot),   Q9CXY1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001157003   ⟸   NM_001163531
- Peptide Label: isoform 2
- UniProtKB: Q8BM80 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001157004   ⟸   NM_001163532
- Peptide Label: isoform 1
- UniProtKB: Q3TDC4 (UniProtKB/Swiss-Prot),   Q99K00 (UniProtKB/Swiss-Prot),   Q9CXY1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006535296   ⟸   XM_006535233
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006535293   ⟸   XM_006535230
- Peptide Label: isoform X1
- UniProtKB: Q3TDC4 (UniProtKB/Swiss-Prot),   Q99K00 (UniProtKB/Swiss-Prot),   Q9CXY1 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006535295   ⟸   XM_006535232
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006535300   ⟸   XM_006535237
- Peptide Label: isoform X6
- UniProtKB: Q8BHJ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006535299   ⟸   XM_006535236
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_030110687   ⟸   XM_030254827
- Peptide Label: isoform X4
RefSeq Acc Id: XP_030110686   ⟸   XM_030254826
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001346352   ⟸   NM_001359423
- Peptide Label: isoform 1
- UniProtKB: Q9CXY1 (UniProtKB/Swiss-Prot),   Q3TDC4 (UniProtKB/Swiss-Prot),   Q99K00 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001346355   ⟸   NM_001359426
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001346356   ⟸   NM_001359427
- Peptide Label: isoform 4
RefSeq Acc Id: ENSMUSP00000143596   ⟸   ENSMUST00000146207
RefSeq Acc Id: ENSMUSP00000112780   ⟸   ENSMUST00000120327
RefSeq Acc Id: ENSMUSP00000077437   ⟸   ENSMUST00000078323
RefSeq Acc Id: ENSMUSP00000068607   ⟸   ENSMUST00000063272
RefSeq Acc Id: XP_036021417   ⟸   XM_036165524
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036021419   ⟸   XM_036165526
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036021416   ⟸   XM_036165523
- Peptide Label: isoform X1
- UniProtKB: Q9CXY1 (UniProtKB/Swiss-Prot),   Q3TDC4 (UniProtKB/Swiss-Prot),   Q99K00 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CXY1-F1-model_v2 AlphaFold Q9CXY1 1-499 view protein structure

Promoters
RGD ID:6887476
Promoter ID:EPDNEW_M7189
Type:initiation region
Name:Tmem175_1
Description:Mus musculus transmembrane protein 175 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385108,629,863 - 108,629,923EPDNEW
RGD ID:6838522
Promoter ID:MM_KWN:43296
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000112579,   ENSMUST00000120327,   NM_001163531,   NM_001163532,   NM_028223,   NM_153569,   OTTMUST00000066750,   OTTMUST00000066769,   OTTMUST00000066770,   OTTMUST00000066774,   UC008YOI.1,   UC008YOL.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365109,058,489 - 109,058,989 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919642 AgrOrtholog
Ensembl Genes ENSMUSG00000013495 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000063272 ENTREZGENE
  ENSMUST00000063272.13 UniProtKB/Swiss-Prot
  ENSMUST00000078323 ENTREZGENE
  ENSMUST00000078323.13 UniProtKB/Swiss-Prot
  ENSMUST00000120327 ENTREZGENE
  ENSMUST00000120327.3 UniProtKB/Swiss-Prot
  ENSMUST00000146207.6 UniProtKB/TrEMBL
InterPro TMEM175 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:72392 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1919642 ENTREZGENE
NCBI Gene 72392 ENTREZGENE
PANTHER ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175 UniProtKB/Swiss-Prot
  ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175 UniProtKB/Swiss-Prot
  ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175 UniProtKB/TrEMBL
  ENDOSOMAL/LYSOSOMAL POTASSIUM CHANNEL TMEM175 UniProtKB/TrEMBL
Pfam DUF1211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmem175 PhenoGen
UniProt Q3TDC4 ENTREZGENE
  Q8BHJ8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BM80 ENTREZGENE, UniProtKB/TrEMBL
  Q99K00 ENTREZGENE
  Q9CXY1 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q3TDC4 UniProtKB/Swiss-Prot
  Q99K00 UniProtKB/Swiss-Prot