Cnbp (cellular nucleic acid binding protein) - Rat Genome Database

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Gene: Cnbp (cellular nucleic acid binding protein) Mus musculus
Analyze
Symbol: Cnbp
Name: cellular nucleic acid binding protein
RGD ID: 1332404
MGI Page MGI
Description: Predicted to have nucleic acid binding activity and translation regulator activity. Involved in positive regulation of cell population proliferation and positive regulation of transcription by RNA polymerase II. Localizes to cytosol; endoplasmic reticulum; and nucleus. Is expressed in several structures, including alimentary system; branchial arch; central nervous system; egg cylinder; and genitourinary system. Human ortholog(s) of this gene implicated in myotonic dystrophy type 2. Orthologous to human CNBP (CCHC-type zinc finger nucleic acid binding protein); INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA408710; cellular nucleic acid binding protein 1; cellular nucleic acid-binding protein; Cnbp1; zinc finger protein 9; Znf; Znf9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,819,597 - 87,828,088 (-)NCBIGRCm39mm39
GRCm39 Ensembl687,819,597 - 87,828,088 (-)Ensembl
GRCm38687,842,615 - 87,851,106 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,842,615 - 87,851,106 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,792,609 - 87,801,100 (-)NCBIGRCm37mm9NCBIm37
MGSCv36687,808,720 - 87,816,636 (-)NCBImm8
Celera689,779,944 - 89,788,435 (-)NCBICelera
Cytogenetic Map6D1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:7896269   PMID:8562047   PMID:8901595   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12045143   PMID:12477932   PMID:12520002   PMID:12588852  
PMID:12904583   PMID:14610273   PMID:15226823   PMID:15489334   PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17335846   PMID:18287559   PMID:18703071  
PMID:18799693   PMID:19334288   PMID:19379700   PMID:20059953   PMID:20360068   PMID:20621159   PMID:21267068   PMID:21677750   PMID:21873635   PMID:21889481   PMID:22639370   PMID:23660517  
PMID:23667590   PMID:24146773   PMID:27618485   PMID:28168305   PMID:29091030   PMID:29735719   PMID:29743260   PMID:30442645   PMID:31087358   PMID:32325033  


Genomics

Comparative Map Data
Cnbp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,819,597 - 87,828,088 (-)NCBIGRCm39mm39
GRCm39 Ensembl687,819,597 - 87,828,088 (-)Ensembl
GRCm38687,842,615 - 87,851,106 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,842,615 - 87,851,106 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,792,609 - 87,801,100 (-)NCBIGRCm37mm9NCBIm37
MGSCv36687,808,720 - 87,816,636 (-)NCBImm8
Celera689,779,944 - 89,788,435 (-)NCBICelera
Cytogenetic Map6D1NCBI
CNBP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3129,167,827 - 129,183,922 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl3129,169,484 - 129,183,922 (-)EnsemblGRCh38hg38GRCh38
GRCh383129,167,827 - 129,183,896 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373128,886,670 - 128,902,739 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,371,122 - 130,385,392 (-)NCBINCBI36hg18NCBI36
Build 343130,371,129 - 130,385,397NCBI
Celera3127,317,738 - 127,333,863 (-)NCBI
Cytogenetic Map3q21.3NCBI
HuRef3126,273,037 - 126,289,092 (-)NCBIHuRef
CHM1_13128,850,015 - 128,866,149 (-)NCBICHM1_1
Cnbp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,302,768 - 120,311,694 (-)NCBI
Rnor_6.0 Ensembl4119,747,911 - 119,756,765 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04119,747,890 - 119,756,787 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04184,999,225 - 185,008,701 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,033,037 - 122,041,891 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14122,277,517 - 122,286,372 (-)NCBI
Celera4109,263,319 - 109,272,173 (-)NCBICelera
Cytogenetic Map4q34NCBI
Cnbp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542913,537,222 - 13,549,520 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542913,537,222 - 13,582,026 (-)NCBIChiLan1.0ChiLan1.0
CNBP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13133,584,384 - 133,598,847 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3133,584,384 - 133,598,887 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03126,227,605 - 126,242,609 (-)NCBIMhudiblu_PPA_v0panPan3
CNBP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,860,915 - 2,929,307 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,916,624 - 2,929,303 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,953,533 - 2,966,216 (+)NCBI
ROS_Cfam_1.0202,881,543 - 2,950,217 (+)NCBI
UMICH_Zoey_3.1202,657,164 - 2,669,839 (+)NCBI
UNSW_CanFamBas_1.0202,980,310 - 2,993,004 (+)NCBI
UU_Cfam_GSD_1.0202,944,755 - 2,957,440 (+)NCBI
LOC101958257
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,165,572 - 20,168,232 (-)NCBI
SpeTri2.0NW_004936798207,442 - 210,124 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CNBP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,630,565 - 71,646,564 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,634,552 - 71,707,027 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LOC103228078
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,877,171 - 51,891,912 (+)NCBI
ChlSab1.1 Ensembl2251,876,545 - 51,890,946 (+)Ensembl
Cnbp
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624943943,381 - 955,997 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396656149Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396656149Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396656149Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396656149Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63866962592607450Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5437342788379171Mouse
15039373Adip28_madiposity 28 (mouse)65630821190308211Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65630821190308211Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65844758392447710Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65854043392540433Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66005768094057799Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66348473897484905Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666713869100714031Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670425898104426034Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670425898104426034Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670425898104426034Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67132262193464093Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671575060105575178Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671981024105981170Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671981024105981170Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675447583104503555Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67554435692607450Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67554435694225955Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67554435694225955Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67710000090000000Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67800000097000000Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681500000102200000Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1095
Count of miRNA genes:442
Interacting mature miRNAs:515
Transcripts:ENSMUST00000032138, ENSMUST00000113617, ENSMUST00000113619, ENSMUST00000134851, ENSMUST00000141961
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001109746 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001355195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_013493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC158626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK153414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190430 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211658 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY176064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY329615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY329623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC058723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ088264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L12693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U20326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X63866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z11870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z11871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032138   ⟹   ENSMUSP00000032138
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,842,615 - 87,851,106 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113617   ⟹   ENSMUSP00000109247
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,843,887 - 87,851,060 (-)Ensembl
RefSeq Acc Id: ENSMUST00000113619   ⟹   ENSMUSP00000109249
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,843,082 - 87,851,080 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134851
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,844,000 - 87,851,059 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141961
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,843,919 - 87,851,027 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204104
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,845,530 - 87,846,317 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204596
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,843,939 - 87,851,022 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204653   ⟹   ENSMUSP00000145274
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,842,615 - 87,851,106 (-)Ensembl
RefSeq Acc Id: ENSMUST00000204890   ⟹   ENSMUSP00000145227
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl687,843,082 - 87,851,030 (-)Ensembl
RefSeq Acc Id: NM_001109745   ⟹   NP_001103215
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,819,597 - 87,828,088 (-)NCBI
GRCm38687,842,615 - 87,851,106 (-)ENTREZGENE
MGSCv37687,792,609 - 87,801,100 (-)RGD
Celera689,779,944 - 89,788,435 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001109746   ⟹   NP_001103216
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,819,597 - 87,828,088 (-)NCBI
GRCm38687,842,615 - 87,851,106 (-)ENTREZGENE
MGSCv37687,792,609 - 87,801,100 (-)RGD
Celera689,779,944 - 89,788,435 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001347325   ⟹   NP_001334254
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,819,597 - 87,828,088 (-)NCBI
GRCm38687,842,615 - 87,851,106 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001355195   ⟹   NP_001342124
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,819,597 - 87,828,088 (-)NCBI
GRCm38687,842,615 - 87,851,106 (-)NCBI
Sequence:
RefSeq Acc Id: NM_013493   ⟹   NP_038521
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39687,819,597 - 87,828,088 (-)NCBI
GRCm38687,842,615 - 87,851,106 (-)ENTREZGENE
MGSCv37687,792,609 - 87,801,100 (-)RGD
Celera689,779,944 - 89,788,435 (-)RGD
cM Map6 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_001103215 (Get FASTA)   NCBI Sequence Viewer  
  NP_001103216 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334254 (Get FASTA)   NCBI Sequence Viewer  
  NP_001342124 (Get FASTA)   NCBI Sequence Viewer  
  NP_038521 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA89198 (Get FASTA)   NCBI Sequence Viewer  
  AAB60490 (Get FASTA)   NCBI Sequence Viewer  
  AAH58723 (Get FASTA)   NCBI Sequence Viewer  
  AAO31613 (Get FASTA)   NCBI Sequence Viewer  
  AAR89463 (Get FASTA)   NCBI Sequence Viewer  
  BAC35938 (Get FASTA)   NCBI Sequence Viewer  
  BAC37269 (Get FASTA)   NCBI Sequence Viewer  
  BAE26042 (Get FASTA)   NCBI Sequence Viewer  
  BAE26440 (Get FASTA)   NCBI Sequence Viewer  
  BAE26992 (Get FASTA)   NCBI Sequence Viewer  
  BAE27058 (Get FASTA)   NCBI Sequence Viewer  
  BAE27097 (Get FASTA)   NCBI Sequence Viewer  
  BAE27117 (Get FASTA)   NCBI Sequence Viewer  
  BAE27288 (Get FASTA)   NCBI Sequence Viewer  
  BAE30298 (Get FASTA)   NCBI Sequence Viewer  
  BAE30476 (Get FASTA)   NCBI Sequence Viewer  
  BAE30832 (Get FASTA)   NCBI Sequence Viewer  
  BAE31974 (Get FASTA)   NCBI Sequence Viewer  
  BAE35390 (Get FASTA)   NCBI Sequence Viewer  
  CAA45345 (Get FASTA)   NCBI Sequence Viewer  
  CAA77896 (Get FASTA)   NCBI Sequence Viewer  
  CAA77897 (Get FASTA)   NCBI Sequence Viewer  
  EDK99228 (Get FASTA)   NCBI Sequence Viewer  
  EDK99229 (Get FASTA)   NCBI Sequence Viewer  
  EDK99230 (Get FASTA)   NCBI Sequence Viewer  
  EDK99231 (Get FASTA)   NCBI Sequence Viewer  
  EDK99232 (Get FASTA)   NCBI Sequence Viewer  
  P53996 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_038521   ⟸   NM_013493
- Peptide Label: isoform 1
- UniProtKB: P53996 (UniProtKB/Swiss-Prot),   Q5QJQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103215   ⟸   NM_001109745
- Peptide Label: isoform 2
- UniProtKB: P53996 (UniProtKB/Swiss-Prot),   Q3U5V2 (UniProtKB/TrEMBL),   Q5QJQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001103216   ⟸   NM_001109746
- Peptide Label: isoform 3
- UniProtKB: Q3U935 (UniProtKB/TrEMBL),   Q5QJQ9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001342124   ⟸   NM_001355195
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001334254   ⟸   NM_001347325
- Peptide Label: isoform 4
- UniProtKB: P53996 (UniProtKB/Swiss-Prot),   Q3ULK8 (UniProtKB/TrEMBL),   Q5QJQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000032138   ⟸   ENSMUST00000032138
RefSeq Acc Id: ENSMUSP00000109249   ⟸   ENSMUST00000113619
RefSeq Acc Id: ENSMUSP00000109247   ⟸   ENSMUST00000113617
RefSeq Acc Id: ENSMUSP00000145227   ⟸   ENSMUST00000204890
RefSeq Acc Id: ENSMUSP00000145274   ⟸   ENSMUST00000204653
Protein Domains
CCHC-type

Promoters
RGD ID:6839107
Promoter ID:MM_KWN:46788
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000113617,   NM_001109745,   NM_001109746,   NM_013493,   OTTMUST00000057065,   OTTMUST00000057066,   UC009CUC.1,   UC009CUE.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36687,800,966 - 87,801,732 (-)MPROMDB
RGD ID:6890350
Promoter ID:EPDNEW_M8626
Type:initiation region
Name:Cnbp_1
Description:Mus musculus cellular nucleic acid binding protein , transcriptvariant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38687,851,022 - 87,851,082EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88431 AgrOrtholog
Ensembl Genes ENSMUSG00000030057 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032138 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109247 UniProtKB/Swiss-Prot
  ENSMUSP00000109249 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145227 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000145274 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000032138 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000113617 UniProtKB/Swiss-Prot
  ENSMUST00000113619 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204653 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000204890 ENTREZGENE, UniProtKB/TrEMBL
InterPro Znf_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:12785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:88431 ENTREZGENE
NCBI Gene 12785 ENTREZGENE
Pfam zf-CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cnbp PhenoGen
PROSITE ZF_CCHC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2HC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57756 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SVS6_MOUSE UniProtKB/TrEMBL
  CNBP_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U5V2 ENTREZGENE, UniProtKB/TrEMBL
  Q3U935 ENTREZGENE, UniProtKB/TrEMBL
  Q3ULK8 ENTREZGENE, UniProtKB/TrEMBL
  Q5QJQ9 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary D3YYF6 UniProtKB/TrEMBL
  Q80Y06 UniProtKB/Swiss-Prot
  Q8BP23 UniProtKB/Swiss-Prot