Ccdc130 (coiled-coil domain containing 130) - Rat Genome Database
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Gene: Ccdc130 (coiled-coil domain containing 130) Mus musculus
Analyze
Symbol: Ccdc130
Name: coiled-coil domain containing 130
RGD ID: 1332380
MGI Page MGI
Description: Predicted to be involved in RNA splicing. Predicted to localize to U2-type spliceosomal complex and post-mRNA release spliceosomal complex. Orthologous to human CCDC130 (coiled-coil domain containing 130); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 4930527D15Rik; C77430; coiled-coil domain-containing protein 130
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,984,396 - 84,997,087 (-)NCBIGRCm39mm39
GRCm38884,257,767 - 84,270,458 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,257,795 - 84,270,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37886,781,694 - 86,794,259 (-)NCBIGRCm37mm9NCBIm37
MGSCv36887,147,900 - 87,160,465 (-)NCBImm8
Celera888,559,931 - 88,572,477 (-)NCBICelera
Cytogenetic Map8C2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:26073538  


Genomics

Comparative Map Data
Ccdc130
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,984,396 - 84,997,087 (-)NCBIGRCm39mm39
GRCm38884,257,767 - 84,270,458 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,257,795 - 84,270,380 (-)EnsemblGRCm38mm10GRCm38
MGSCv37886,781,694 - 86,794,259 (-)NCBIGRCm37mm9NCBIm37
MGSCv36887,147,900 - 87,160,465 (-)NCBImm8
Celera888,559,931 - 88,572,477 (-)NCBICelera
Cytogenetic Map8C2NCBI
CCDC130
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1913,731,760 - 13,763,296 (+)EnsemblGRCh38hg38GRCh38
GRCh381913,731,752 - 13,763,292 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371913,842,574 - 13,874,108 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361913,719,753 - 13,735,106 (+)NCBINCBI36hg18NCBI36
Celera1913,752,540 - 13,767,891 (+)NCBI
Cytogenetic Map19p13.13NCBI
HuRef1913,430,368 - 13,445,785 (+)NCBIHuRef
CHM1_11913,843,090 - 13,874,655 (+)NCBICHM1_1
Ccdc130
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,367,552 - 25,378,993 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,367,543 - 25,378,974 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,343,726 - 36,355,150 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,582,029 - 25,589,845 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11925,570,050 - 25,589,046 (+)NCBI
Celera1923,447,125 - 23,454,940 (+)NCBICelera
Cytogenetic Map19q11NCBI
Ccdc130
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,560,168 - 32,584,886 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,560,182 - 32,584,747 (+)NCBIChiLan1.0ChiLan1.0
CCDC130
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11914,028,031 - 14,059,681 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,028,054 - 14,059,676 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01913,294,502 - 13,326,499 (+)NCBIMhudiblu_PPA_v0panPan3
CCDC130
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2048,659,652 - 48,669,329 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12048,659,426 - 48,671,771 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ccdc130
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366592,513,139 - 2,525,982 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC130
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,348,135 - 65,372,085 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,355,921 - 65,372,120 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,683,170 - 65,699,421 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC130
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,408,839 - 12,423,920 (+)NCBI
ChlSab1.1 Ensembl612,409,702 - 12,423,968 (+)Ensembl
Ccdc130
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249011,092,566 - 1,105,585 (+)NCBI

Position Markers
RH126162  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38884,258,372 - 84,258,605UniSTSGRCm38
MGSCv37886,782,271 - 86,782,504UniSTSGRCm37
Celera888,560,508 - 88,560,741UniSTS
Cytogenetic Map8C3UniSTS
Whitehead/MRC_RH81004.96UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1432
Count of miRNA genes:644
Interacting mature miRNAs:784
Transcripts:ENSMUST00000005120, ENSMUST00000098578, ENSMUST00000163993, ENSMUST00000164476, ENSMUST00000166285, ENSMUST00000166728, ENSMUST00000172320
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000005120   ⟹   ENSMUSP00000005120
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,258,301 - 84,270,347 (-)Ensembl
RefSeq Acc Id: ENSMUST00000098578   ⟹   ENSMUSP00000096177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,257,795 - 84,270,380 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163993   ⟹   ENSMUSP00000125894
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,263,906 - 84,270,370 (-)Ensembl
RefSeq Acc Id: ENSMUST00000164476
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,258,302 - 84,261,906 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166285
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,260,396 - 84,262,145 (-)Ensembl
RefSeq Acc Id: ENSMUST00000166728
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,264,181 - 84,270,367 (-)Ensembl
RefSeq Acc Id: ENSMUST00000172320   ⟹   ENSMUSP00000128605
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl884,259,115 - 84,266,838 (-)Ensembl
RefSeq Acc Id: NM_001294281   ⟹   NP_001281210
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,984,396 - 84,997,031 (-)NCBI
GRCm38884,257,767 - 84,270,402 (-)NCBI
Celera888,559,903 - 88,572,519 (-)NCBI
Sequence:
RefSeq Acc Id: NM_026350   ⟹   NP_080626
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,984,396 - 84,997,031 (-)NCBI
GRCm38884,257,767 - 84,270,402 (-)NCBI
MGSCv37886,781,694 - 86,794,259 (-)RGD
Celera888,559,903 - 88,572,519 (-)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531315   ⟹   XP_006531378
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,984,924 - 84,996,970 (-)NCBI
GRCm38884,258,295 - 84,268,351 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006531316   ⟹   XP_006531379
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,984,924 - 84,997,087 (-)NCBI
GRCm38884,258,295 - 84,270,458 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_080626   ⟸   NM_026350
- Peptide Label: isoform 1
- UniProtKB: Q9D516 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006531379   ⟸   XM_006531316
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006531378   ⟸   XM_006531315
- Peptide Label: isoform X1
- UniProtKB: Q9D516 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001281210   ⟸   NM_001294281
- Peptide Label: isoform 2
- UniProtKB: Q9D516 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000125894   ⟸   ENSMUST00000163993
RefSeq Acc Id: ENSMUSP00000128605   ⟸   ENSMUST00000172320
RefSeq Acc Id: ENSMUSP00000096177   ⟸   ENSMUST00000098578
RefSeq Acc Id: ENSMUSP00000005120   ⟸   ENSMUST00000005120

Promoters
RGD ID:8667663
Promoter ID:EPDNEW_M11863
Type:multiple initiation site
Name:Ccdc130_1
Description:Mus musculus coiled-coil domain containing 130 , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38884,270,371 - 84,270,431EPDNEW
RGD ID:6842901
Promoter ID:MM_KWN:55066
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000005120,   NM_026350
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,794,106 - 86,794,707 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914986 AgrOrtholog
Ensembl Genes ENSMUSG00000004994 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000005120 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000096177 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000125894 UniProtKB/TrEMBL
  ENSMUSP00000128605 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000005120 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000098578 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000163993 UniProtKB/TrEMBL
  ENSMUST00000172320 UniProtKB/TrEMBL
InterPro Saf4/Yju2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67736 UniProtKB/Swiss-Prot
MGD MGI:1914986 ENTREZGENE
NCBI Gene 67736 ENTREZGENE
PANTHER PTHR12111 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF572 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ccdc130 PhenoGen
UniGene Mm.30095 ENTREZGENE
UniProt CC130_MOUSE UniProtKB/Swiss-Prot
  E9Q5P3_MOUSE UniProtKB/TrEMBL
  E9Q971_MOUSE UniProtKB/TrEMBL
  Q8BN00_MOUSE UniProtKB/TrEMBL
  Q922B5_MOUSE UniProtKB/TrEMBL
  Q9D516 ENTREZGENE
UniProt Secondary Q8VCB4 UniProtKB/Swiss-Prot