Exoc3 (exocyst complex component 3) - Rat Genome Database

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Gene: Exoc3 (exocyst complex component 3) Mus musculus
Analyze
Symbol: Exoc3
Name: exocyst complex component 3
RGD ID: 1332374
MGI Page MGI
Description: Predicted to enable SNARE binding activity. Predicted to be involved in exocyst localization and exocytosis. Predicted to act upstream of or within protein transport. Predicted to be located in secretory granule membrane. Predicted to be part of exocyst. Predicted to be active in presynaptic membrane. Orthologous to human EXOC3 (exocyst complex component 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810050O03Rik; E430013E20Rik; exocyst complex component Sec6; Sec6; SEC6-like 1; Sec6l1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,317,921 - 74,358,151 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,317,607 - 74,356,851 (-)EnsemblGRCm39 Ensembl
GRCm381374,169,802 - 74,210,032 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,169,488 - 74,208,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,307,253 - 74,346,148 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,635,807 - 74,674,702 (-)NCBIMGSCv36mm8
Celera1376,499,394 - 76,538,276 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10925150   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:14610273   PMID:15449545   PMID:15782199   PMID:15878854   PMID:16141072  
PMID:16141073   PMID:21873635   PMID:22420621   PMID:32325033   PMID:33560379  


Genomics

Comparative Map Data
Exoc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391374,317,921 - 74,358,151 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1374,317,607 - 74,356,851 (-)EnsemblGRCm39 Ensembl
GRCm381374,169,802 - 74,210,032 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1374,169,488 - 74,208,732 (-)EnsemblGRCm38mm10GRCm38
MGSCv371374,307,253 - 74,346,148 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361374,635,807 - 74,674,702 (-)NCBIMGSCv36mm8
Celera1376,499,394 - 76,538,276 (-)NCBICelera
Cytogenetic Map13C1NCBI
cM Map1340.15NCBI
EXOC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385443,176 - 467,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5443,175 - 471,937 (+)EnsemblGRCh38hg38GRCh38
GRCh375443,291 - 467,405 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365496,334 - 520,411 (+)NCBINCBI36Build 36hg18NCBI36
Build 345496,374 - 520,407NCBI
Celera5541,456 - 565,545 (+)NCBICelera
Cytogenetic Map5p15.33NCBI
HuRef5431,407 - 455,422 (+)NCBIHuRef
CHM1_15443,164 - 467,222 (+)NCBICHM1_1
T2T-CHM13v2.05438,418 - 462,555 (+)NCBIT2T-CHM13v2.0
Exoc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8130,919,871 - 30,950,624 (+)NCBIGRCr8
mRatBN7.2129,091,298 - 29,122,056 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl129,091,294 - 29,122,045 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx128,893,113 - 28,923,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0134,892,975 - 34,923,773 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0129,093,734 - 29,124,536 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0131,700,953 - 31,731,726 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl131,700,953 - 31,731,815 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0133,126,575 - 33,159,109 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4129,897,536 - 29,928,281 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1129,902,027 - 29,931,141 (+)NCBI
Celera127,743,063 - 27,773,955 (+)NCBICelera
Cytogenetic Map1p11NCBI
Exoc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955504196,695 - 223,812 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955504195,743 - 223,812 (+)NCBIChiLan1.0ChiLan1.0
EXOC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24662,394 - 690,011 (+)NCBINHGRI_mPanPan1-v2
PanPan1.1 Ensembl5568,471 - 596,723 (+)Ensemblpanpan1.1panPan2
EXOC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13411,790,927 - 11,811,566 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3411,791,926 - 11,811,561 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3416,304,626 - 16,325,902 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03411,695,749 - 11,716,848 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3411,694,759 - 11,716,578 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13411,746,203 - 11,767,708 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03411,727,053 - 11,748,335 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03411,937,421 - 11,958,497 (-)NCBIUU_Cfam_GSD_1.0
Exoc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213244,844,352 - 244,861,748 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368151,005,560 - 1,023,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368151,005,637 - 1,022,916 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1679,705,750 - 79,730,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11679,705,743 - 79,730,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
EXOC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.14320,067 - 359,647 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl4337,658 - 360,149 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606427,462,671 - 27,487,604 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Exoc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624751215,821 - 255,104 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624751215,762 - 254,200 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Exoc3
1513 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:645
Count of miRNA genes:441
Interacting mature miRNAs:507
Transcripts:ENSMUST00000035934
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse
1300941Skl6_mskeletal size (tail length) 6 (mouse)Not determined136425082198250945Mouse
1301949Skull20_mskull morphology 20 (mouse)Not determined136425082198250945Mouse
1301445Listr2_mlisteriosis resistance 2 (mouse)Not determined1366744601100744746Mouse
1301593Heal8_mwound healing/regeneration 8 (mouse)Not determined1368053999102054119Mouse
14696726Kidrq3_mkidney weight, right QTL 3 (mouse)1368217066102217066Mouse
14747007Mancz11_mmandible centroid size 11 (mouse)1370111284104111284Mouse

Markers in Region
AI930210  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381374,169,322 - 74,169,404UniSTSGRCm38
MGSCv371374,306,770 - 74,306,852UniSTSGRCm37
Celera1376,498,911 - 76,498,993UniSTS
Cytogenetic Map13C1UniSTS
cM Map1343.0UniSTS
Whitehead/MRC_RH13667.43UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000035934   ⟹   ENSMUSP00000039416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,317,607 - 74,356,828 (-)Ensembl
GRCm38.p6 Ensembl1374,169,488 - 74,208,709 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220548
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,354,831 - 74,356,851 (-)Ensembl
GRCm38.p6 Ensembl1374,206,712 - 74,208,732 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220679
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,320,118 - 74,324,598 (-)Ensembl
GRCm38.p6 Ensembl1374,171,999 - 74,176,479 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222213   ⟹   ENSMUSP00000152783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,341,389 - 74,355,212 (-)Ensembl
GRCm38.p6 Ensembl1374,193,270 - 74,207,093 (-)Ensembl
RefSeq Acc Id: ENSMUST00000222248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,320,257 - 74,322,566 (-)Ensembl
GRCm38.p6 Ensembl1374,172,138 - 74,174,447 (-)Ensembl
RefSeq Acc Id: ENSMUST00000223045   ⟹   ENSMUSP00000152217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1374,347,651 - 74,356,381 (-)Ensembl
GRCm38.p6 Ensembl1374,199,532 - 74,208,262 (-)Ensembl
RefSeq Acc Id: NM_177333   ⟹   NP_796307
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,317,924 - 74,356,819 (-)NCBI
GRCm381374,169,805 - 74,208,700 (-)NCBI
MGSCv371374,307,253 - 74,346,148 (-)RGD
Celera1376,499,394 - 76,538,276 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517191   ⟹   XP_006517254
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,317,921 - 74,358,151 (-)NCBI
GRCm381374,169,802 - 74,208,705 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517192   ⟹   XP_006517255
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,317,921 - 74,356,848 (-)NCBI
GRCm381374,169,802 - 74,210,032 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315474   ⟹   XP_017170963
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391374,317,921 - 74,356,823 (-)NCBI
GRCm381374,169,805 - 74,208,676 (-)NCBI
Sequence:
RefSeq Acc Id: NP_796307   ⟸   NM_177333
- UniProtKB: Q6KAR6 (UniProtKB/Swiss-Prot),   Q8K0E2 (UniProtKB/TrEMBL),   Q8BIT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517254   ⟸   XM_006517191
- Peptide Label: isoform X1
- UniProtKB: Q6KAR6 (UniProtKB/Swiss-Prot),   Q8K0E2 (UniProtKB/TrEMBL),   Q8BIT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517255   ⟸   XM_006517192
- Peptide Label: isoform X2
- UniProtKB: Q8BIT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170963   ⟸   XM_017315474
- Peptide Label: isoform X2
- UniProtKB: Q8BIT7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000152217   ⟸   ENSMUST00000223045
RefSeq Acc Id: ENSMUSP00000152783   ⟸   ENSMUST00000222213
RefSeq Acc Id: ENSMUSP00000039416   ⟸   ENSMUST00000035934

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6KAR6-F1-model_v2 AlphaFold Q6KAR6 1-755 view protein structure

Promoters
RGD ID:8680828
Promoter ID:EPDNEW_M18445
Type:initiation region
Name:Exoc3_1
Description:Mus musculus exocyst complex component 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381374,208,700 - 74,208,760EPDNEW
RGD ID:6823873
Promoter ID:MM_KWN:14685
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_177333
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361374,346,101 - 74,346,967 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443972 AgrOrtholog
Ensembl Genes ENSMUSG00000034152 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035934 ENTREZGENE
  ENSMUST00000035934.7 UniProtKB/Swiss-Prot
  ENSMUST00000222213.2 UniProtKB/TrEMBL
  ENSMUST00000223045.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.357.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.10.357.70 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro EXOC3/Sec6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EXOC3/Sec6_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:211446 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2443972 ENTREZGENE
NCBI Gene 211446 ENTREZGENE
PANTHER EXOCYST COMPLEX COMPONENT 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR21292 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Sec6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Exoc3 PhenoGen
UniProt A0A1Y7VKY4_MOUSE UniProtKB/TrEMBL
  A0A1Y7VP30_MOUSE UniProtKB/TrEMBL
  EXOC3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q8BIT7 ENTREZGENE, UniProtKB/TrEMBL
  Q8K0E2 ENTREZGENE, UniProtKB/TrEMBL