Galnt10 (polypeptide N-acetylgalactosaminyltransferase 10) - Rat Genome Database

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Gene: Galnt10 (polypeptide N-acetylgalactosaminyltransferase 10) Mus musculus
Analyze
Symbol: Galnt10
Name: polypeptide N-acetylgalactosaminyltransferase 10
RGD ID: 1332335
MGI Page MGI
Description: Enables polypeptide N-acetylgalactosaminyltransferase activity. Acts upstream of or within protein O-linked glycosylation. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alimentary system; brain; eye; integumental system; and limb. Orthologous to human GALNT10 (polypeptide N-acetylgalactosaminyltransferase 10).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU018154; C330012K04Rik; Gal; GalNAc; GalNAc-T10; GalNAc-T9; Galnt9; polypeptide GalNAc transferase 10; pp-GaNTase 10; ppGaNTase; protein-UDP acetylgalactosaminyltransferase 10; UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 10; UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 9; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,536,268 - 57,678,327 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,536,268 - 57,678,340 (+)EnsemblGRCm39 Ensembl
GRCm381157,645,442 - 57,787,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,645,442 - 57,787,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,458,944 - 57,601,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,461,637 - 57,603,696 (+)NCBIMGSCv36mm8
Celera1162,398,045 - 62,539,186 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-butoxyethanol  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (ISO)
bleomycin A5  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
CGP 52608  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dextran sulfate  (EXP)
diethylstilbestrol  (ISO)
disulfiram  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
fenthion  (EXP)
fonofos  (ISO)
formaldehyde  (ISO)
glycidol  (ISO)
isoflavones  (ISO)
lead(0)  (ISO)
mercury dibromide  (ISO)
methoxychlor  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylphenidate  (EXP)
monosodium L-glutamate  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
terbufos  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. MGD IEA MGD IEA
6. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Cloning and characterization of a ninth member of the UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase family, ppGaNTase-T9. Ten Hagen KG, etal., J Biol Chem 2001 May 18;276(20):17395-404.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11159923   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15018805   PMID:15449545  
PMID:15489334   PMID:15840001   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22643896   PMID:25107907   PMID:25615642   PMID:31366290  
PMID:31740596   PMID:31882545   PMID:34321999  


Genomics

Comparative Map Data
Galnt10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391157,536,268 - 57,678,327 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1157,536,268 - 57,678,340 (+)EnsemblGRCm39 Ensembl
GRCm381157,645,442 - 57,787,514 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1157,645,442 - 57,787,514 (+)EnsemblGRCm38mm10GRCm38
MGSCv371157,458,944 - 57,601,003 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,461,637 - 57,603,696 (+)NCBIMGSCv36mm8
Celera1162,398,045 - 62,539,186 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1135.27NCBI
GALNT10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385154,190,733 - 154,420,984 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5154,190,730 - 154,420,984 (+)EnsemblGRCh38hg38GRCh38
GRCh375153,570,293 - 153,800,544 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365153,550,488 - 153,780,003 (+)NCBINCBI36Build 36hg18NCBI36
Build 345153,550,487 - 153,780,003NCBI
Celera5149,750,055 - 149,876,200 (+)NCBICelera
Cytogenetic Map5q33.2NCBI
HuRef5148,711,113 - 148,941,366 (+)NCBIHuRef
CHM1_15153,003,035 - 153,233,166 (+)NCBICHM1_1
T2T-CHM13v2.05154,723,701 - 154,954,912 (+)NCBIT2T-CHM13v2.0
Galnt10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81042,321,691 - 42,468,087 (+)NCBIGRCr8
mRatBN7.21041,821,216 - 41,967,618 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1041,820,158 - 41,967,013 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1046,484,468 - 46,627,402 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01045,974,720 - 46,117,663 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01041,478,345 - 41,621,282 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01043,067,316 - 43,208,992 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1043,067,299 - 43,210,427 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01042,867,364 - 43,008,297 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41043,237,411 - 43,381,584 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11043,251,033 - 43,395,207 (+)NCBI
Celera1041,116,176 - 41,257,585 (+)NCBICelera
Cytogenetic Map10q22NCBI
Galnt10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554088,578,725 - 8,800,800 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554088,578,725 - 8,804,562 (+)NCBIChiLan1.0ChiLan1.0
GALNT10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24149,396,891 - 149,628,220 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15147,536,436 - 147,767,765 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05149,497,998 - 149,822,999 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15155,438,451 - 155,821,214 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5155,548,799 - 155,821,214 (+)Ensemblpanpan1.1panPan2
GALNT10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1455,275,008 - 55,491,619 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl455,277,883 - 55,491,499 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha455,166,269 - 55,382,706 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0455,709,568 - 55,926,011 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl455,711,429 - 55,926,225 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1455,539,909 - 55,756,240 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0455,638,401 - 55,854,902 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0456,140,974 - 56,357,479 (-)NCBIUU_Cfam_GSD_1.0
Galnt10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213109,897,105 - 110,137,710 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365158,350,258 - 8,483,437 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365158,346,450 - 8,391,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALNT10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1668,723,995 - 68,961,326 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11668,723,993 - 69,032,759 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21674,632,993 - 74,817,743 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALNT10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12356,648,235 - 56,878,343 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2356,648,404 - 56,878,331 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603420,785,425 - 21,015,525 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galnt10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473334,772,657 - 34,988,140 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473334,772,657 - 34,988,093 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galnt10
5533 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1540
Count of miRNA genes:698
Interacting mature miRNAs:884
Transcripts:ENSMUST00000066987, ENSMUST00000108846
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115007819184078411Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1302186Blmpf2_mbleomycin-induced pulmonary fibrosis 2 (mouse)Not determined115406567067078411Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114570858189818733Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115412675283733652Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114631940780319522Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115339058887390737Mouse
4141875Etax9_methanol induced ataxia 9 (mouse)Not determined5528498572209927Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156864027114157957Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44630038113058009Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114516587379978324Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114618516780185262Mouse
4142148Ckdbp2_mchronic kidney disease blood pressure locus 2 (mouse)Not determined115408094165103841Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
4141084Spqq1_msperm quality QTL 1 (mouse)Not determined5406567063319522Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114225661776256730Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114463003876854757Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115249438586494385Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114225661776256730Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse

Markers in Region
AU018154  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,785,859 - 57,785,945UniSTSGRCm38
MGSCv371157,599,361 - 57,599,447UniSTSGRCm37
Celera1162,537,549 - 62,537,635UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead/MRC_RH11757.53UniSTS
Galnt10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11B1.3UniSTS
cM Map11 UniSTS
21.MMHAP66FLG3.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,760,524 - 57,760,683UniSTSGRCm38
MGSCv371157,574,026 - 57,574,185UniSTSGRCm37
Celera1162,513,952 - 62,514,111UniSTS
Cytogenetic Map11B1.3UniSTS
Whitehead_YAC11 UniSTS
UniSTS:236584  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381157,786,167 - 57,786,337UniSTSGRCm38
MGSCv371157,599,669 - 57,599,839UniSTSGRCm37
Celera1162,537,853 - 62,538,024UniSTS
Cytogenetic Map11B1.3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_134189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030245622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK030899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB626609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC060617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000066987   ⟹   ENSMUSP00000065096
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1157,536,268 - 57,678,340 (+)Ensembl
GRCm38.p6 Ensembl1157,645,442 - 57,787,514 (+)Ensembl
RefSeq Acc Id: ENSMUST00000108846   ⟹   ENSMUSP00000104474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1157,536,291 - 57,617,737 (+)Ensembl
GRCm38.p6 Ensembl1157,645,465 - 57,726,911 (+)Ensembl
RefSeq Acc Id: NM_134189   ⟹   NP_598950
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,536,268 - 57,678,327 (+)NCBI
GRCm381157,645,442 - 57,787,501 (+)NCBI
MGSCv371157,458,944 - 57,601,003 (+)RGD
Celera1162,398,045 - 62,539,186 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532391   ⟹   XP_006532454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,536,274 - 57,676,943 (+)NCBI
GRCm381157,645,448 - 57,787,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245620   ⟹   XP_030101480
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,536,271 - 57,677,405 (+)NCBI
GRCm381157,645,448 - 57,787,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245621   ⟹   XP_030101481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,536,268 - 57,676,943 (+)NCBI
GRCm381157,645,442 - 57,787,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030245622   ⟹   XP_030101482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,536,274 - 57,676,943 (+)NCBI
GRCm381157,725,574 - 57,787,514 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156372   ⟹   XP_036012265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391157,536,268 - 57,676,943 (+)NCBI
Sequence:
RefSeq Acc Id: NP_598950   ⟸   NM_134189
- UniProtKB: Q8BZU8 (UniProtKB/Swiss-Prot),   Q6KAQ2 (UniProtKB/Swiss-Prot),   Q91YJ6 (UniProtKB/Swiss-Prot),   Q6P9S7 (UniProtKB/Swiss-Prot),   Q5SQF9 (UniProtKB/TrEMBL),   Q3TXV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532454   ⟸   XM_006532391
- Peptide Label: isoform X1
- UniProtKB: Q3TXV9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_030101481   ⟸   XM_030245621
- Peptide Label: isoform X1
- UniProtKB: Q3TXV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101480   ⟸   XM_030245620
- Peptide Label: isoform X1
- UniProtKB: Q3TXV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030101482   ⟸   XM_030245622
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000065096   ⟸   ENSMUST00000066987
RefSeq Acc Id: ENSMUSP00000104474   ⟸   ENSMUST00000108846
RefSeq Acc Id: XP_036012265   ⟸   XM_036156372
- Peptide Label: isoform X2
Protein Domains
Ricin B lectin   Ricin B-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P9S7-F1-model_v2 AlphaFold Q6P9S7 1-603 view protein structure

Promoters
RGD ID:6820935
Promoter ID:MM_KWN:7512
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   Spleen
Transcripts:OTTMUST00000012702,   UC007JAA.1,   UC007JAC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361157,458,006 - 57,459,052 (+)MPROMDB
RGD ID:8674726
Promoter ID:EPDNEW_M15394
Type:multiple initiation site
Name:Galnt10_1
Description:Mus musculus polypeptide N-acetylgalactosaminyltransferase 10, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381157,645,445 - 57,645,505EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890480 AgrOrtholog
Ensembl Genes ENSMUSG00000020520 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000066987 ENTREZGENE
  ENSMUST00000066987.14 UniProtKB/Swiss-Prot
  ENSMUST00000108846.2 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GalNAc-T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_trans_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B-like_lectins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:171212 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890480 ENTREZGENE
NCBI Gene 171212 ENTREZGENE
PANTHER N-ACETYLGALACTOSAMINYLTRANSFERASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glycos_transf_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ricin_B_lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galnt10 PhenoGen
PROSITE RICIN_B_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RICIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50370 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt GLT10_MOUSE UniProtKB/Swiss-Prot
  Q3TXV9 ENTREZGENE, UniProtKB/TrEMBL
  Q5SQF9 ENTREZGENE, UniProtKB/TrEMBL
  Q5ST18_MOUSE UniProtKB/TrEMBL
  Q6KAQ2 ENTREZGENE
  Q6P9S7 ENTREZGENE
  Q8BZU8 ENTREZGENE
  Q91YJ6 ENTREZGENE
UniProt Secondary Q6KAQ2 UniProtKB/Swiss-Prot
  Q8BZU8 UniProtKB/Swiss-Prot
  Q91YJ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-08-22 Galnt10  polypeptide N-acetylgalactosaminyltransferase 10    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10  Symbol and/or name change 5135510 APPROVED