Use1 (unconventional SNARE in the ER 1 homolog (S. cerevisiae)) - Rat Genome Database

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Gene: Use1 (unconventional SNARE in the ER 1 homolog (S. cerevisiae)) Mus musculus
Analyze
Symbol: Use1
Name: unconventional SNARE in the ER 1 homolog (S. cerevisiae)
RGD ID: 1332218
MGI Page MGI
Description: Predicted to enable SNAP receptor activity. Acts upstream of or within endoplasmic reticulum tubular network organization and regulation of ER to Golgi vesicle-mediated transport. Predicted to be located in COPI-coated vesicle. Predicted to be part of SNARE complex. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including early conceptus; embryo ectoderm; embryo mesoderm; optic vesicle; and primitive streak. Orthologous to human USE1 (unconventional SNARE in the ER 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010315L10Rik; 5730403H22Rik; AV002165; D12; Ed2; embryonic development factor 2; p31; Q-S; Q-snare; USE1-like protein; vesicle transport protein USE1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,819,329 - 71,822,376 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,819,492 - 71,822,376 (+)EnsemblGRCm39 Ensembl
GRCm38871,366,848 - 71,369,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,366,848 - 71,369,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,890,747 - 73,893,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,296,215 - 74,298,718 (+)NCBIMGSCv36mm8
Celera873,889,937 - 73,892,821 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072  
PMID:16141073   PMID:16354670   PMID:16939003   PMID:18799693   PMID:19188447   PMID:19710423   PMID:21267068   PMID:21816346   PMID:21873635   PMID:23499007   PMID:25184340   PMID:26272612  
PMID:28378742   PMID:32554809  


Genomics

Comparative Map Data
Use1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,819,329 - 71,822,376 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,819,492 - 71,822,376 (+)EnsemblGRCm39 Ensembl
GRCm38871,366,848 - 71,369,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,366,848 - 71,369,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,890,747 - 73,893,631 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,296,215 - 74,298,718 (+)NCBIMGSCv36mm8
Celera873,889,937 - 73,892,821 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
USE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,215,357 - 17,219,829 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,215,346 - 17,219,829 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,326,166 - 17,330,638 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,187,155 - 17,191,638 (+)NCBINCBI36Build 36hg18NCBI36
Celera1917,227,674 - 17,232,159 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,893,593 - 16,898,078 (+)NCBIHuRef
CHM1_11917,325,672 - 17,330,156 (+)NCBICHM1_1
T2T-CHM13v2.01917,349,405 - 17,354,703 (+)NCBIT2T-CHM13v2.0
Use1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,069,118 - 18,075,816 (+)NCBIGRCr8
mRatBN7.21618,038,284 - 18,041,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,039,173 - 18,041,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,090,802 - 18,093,451 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,223,356 - 19,226,011 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,143,723 - 18,146,372 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,762,202 - 19,765,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,762,938 - 19,765,782 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,622,280 - 19,625,903 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,528,286 - 18,530,994 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11618,528,291 - 18,530,992 (+)NCBI
Celera1618,246,778 - 18,249,398 (+)NCBICelera
Cytogenetic Map16p14NCBI
Use1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524969,422 - 971,997 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524969,181 - 973,469 (-)NCBIChiLan1.0ChiLan1.0
USE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,085,101 - 22,089,949 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,091,701 - 21,096,525 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,702,277 - 16,706,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,677,354 - 17,681,516 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,677,411 - 17,681,500 (+)Ensemblpanpan1.1panPan2
USE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,507,986 - 45,510,920 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,507,985 - 45,510,891 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,421,267 - 45,424,203 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,994,133 - 45,997,070 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2045,993,020 - 45,997,008 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12045,230,749 - 45,233,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,640,604 - 45,643,533 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,916,408 - 45,919,344 (-)NCBIUU_Cfam_GSD_1.0
Use1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118204,063,649 - 204,066,537 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,612,790 - 3,615,656 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,612,788 - 3,615,671 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,450,425 - 60,454,800 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,450,424 - 60,454,070 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2260,079,245 - 60,083,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
USE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,709,956 - 15,714,830 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,710,011 - 15,714,812 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,718,271 - 3,723,144 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Use1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908684,458 - 687,222 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908683,505 - 687,259 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Use1
71 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2375
Count of miRNA genes:575
Interacting mature miRNAs:720
Transcripts:ENSMUST00000019169, ENSMUST00000110053, ENSMUST00000110054, ENSMUST00000127517, ENSMUST00000136368, ENSMUST00000137137, ENSMUST00000139541, ENSMUST00000140236, ENSMUST00000142685, ENSMUST00000143657, ENSMUST00000146221, ENSMUST00000154550
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84474791478748059Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84809006482090180Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84809006482090180Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84819016882190288Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84924559183245673Mouse
14746987Manh64_mmandible shape 64 (mouse)85050595884505958Mouse
14747005Mancz7_mmandible centroid size 7 (mouse)85050595884505958Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
11039503Ccc4_mcolitis susceptibility in the Collaborative Cross 4 (mouse)86517423778002730Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86872247983326976Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse

Markers in Region
2010315L10Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C1UniSTS
cM Map8 UniSTS
AV002165  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38871,369,142 - 71,369,271UniSTSGRCm38
MGSCv37873,893,041 - 73,893,170UniSTSGRCm37
Celera873,892,231 - 73,892,360UniSTS
Cytogenetic Map8C1UniSTS
Whitehead/MRC_RH8771.23UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001145780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_025917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006509726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036154247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC127416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF353245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK012490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY842453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC038519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC075695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY097923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY286283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000019169   ⟹   ENSMUSP00000019169
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,861 - 71,822,376 (+)Ensembl
GRCm38.p6 Ensembl871,367,217 - 71,369,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110053   ⟹   ENSMUSP00000105680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,492 - 71,822,373 (+)Ensembl
GRCm38.p6 Ensembl871,366,848 - 71,369,729 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110054   ⟹   ENSMUSP00000105681
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,586 - 71,822,376 (+)Ensembl
GRCm38.p6 Ensembl871,366,942 - 71,369,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,820,285 - 71,820,858 (+)Ensembl
GRCm38.p6 Ensembl871,367,641 - 71,368,214 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136368
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,887 - 71,821,642 (+)Ensembl
GRCm38.p6 Ensembl871,367,243 - 71,368,998 (+)Ensembl
RefSeq Acc Id: ENSMUST00000137137
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,821,436 - 71,822,315 (+)Ensembl
GRCm38.p6 Ensembl871,368,792 - 71,369,671 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139541   ⟹   ENSMUSP00000122406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,649 - 71,820,450 (+)Ensembl
GRCm38.p6 Ensembl871,367,005 - 71,367,806 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140236
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,820,424 - 71,822,376 (+)Ensembl
GRCm38.p6 Ensembl871,367,780 - 71,369,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,820,028 - 71,821,329 (+)Ensembl
GRCm38.p6 Ensembl871,367,384 - 71,368,685 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,861 - 71,822,376 (+)Ensembl
GRCm38.p6 Ensembl871,367,217 - 71,369,732 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,887 - 71,821,475 (+)Ensembl
GRCm38.p6 Ensembl871,367,243 - 71,368,831 (+)Ensembl
RefSeq Acc Id: ENSMUST00000154550
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl871,819,861 - 71,822,376 (+)Ensembl
GRCm38.p6 Ensembl871,367,217 - 71,369,732 (+)Ensembl
RefSeq Acc Id: NM_001145780   ⟹   NP_001139252
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,819,492 - 71,822,376 (+)NCBI
GRCm38871,366,848 - 71,369,732 (+)ENTREZGENE
MGSCv37873,890,747 - 73,893,631 (+)RGD
Celera873,889,937 - 73,892,821 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_025917   ⟹   NP_080193
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,819,861 - 71,822,376 (+)NCBI
GRCm38871,367,217 - 71,369,732 (+)NCBI
MGSCv37873,890,747 - 73,893,631 (+)RGD
Celera873,889,937 - 73,892,821 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509726   ⟹   XP_006509789
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,819,329 - 71,822,375 (+)NCBI
GRCm38871,366,853 - 71,369,731 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154245   ⟹   XP_036010138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,819,329 - 71,822,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154246   ⟹   XP_036010139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,819,329 - 71,822,375 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036154247   ⟹   XP_036010140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,819,329 - 71,822,375 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_080193   ⟸   NM_025917
- Peptide Label: isoform 1
- UniProtKB: Q80V73 (UniProtKB/Swiss-Prot),   Q3TUK0 (UniProtKB/Swiss-Prot),   Q99MB6 (UniProtKB/Swiss-Prot),   Q9CQ56 (UniProtKB/Swiss-Prot),   Q5I940 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001139252   ⟸   NM_001145780
- Peptide Label: isoform 3
- UniProtKB: E9Q496 (UniProtKB/TrEMBL),   Q5I940 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006509789   ⟸   XM_006509726
- Peptide Label: isoform X3
- UniProtKB: Q5I940 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000122406   ⟸   ENSMUST00000139541
RefSeq Acc Id: ENSMUSP00000105681   ⟸   ENSMUST00000110054
RefSeq Acc Id: ENSMUSP00000105680   ⟸   ENSMUST00000110053
RefSeq Acc Id: ENSMUSP00000019169   ⟸   ENSMUST00000019169
RefSeq Acc Id: XP_036010138   ⟸   XM_036154245
- Peptide Label: isoform X1
- UniProtKB: Q5I940 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036010139   ⟸   XM_036154246
- Peptide Label: isoform X2
- UniProtKB: Q5I940 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036010140   ⟸   XM_036154247
- Peptide Label: isoform X4
- UniProtKB: Q5I940 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQ56-F1-model_v2 AlphaFold Q9CQ56 1-270 view protein structure

Promoters
RGD ID:8667379
Promoter ID:EPDNEW_M11721
Type:initiation region
Name:Use1_2
Description:Mus musculus unconventional SNARE in the ER 1 homolog , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11722  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,366,925 - 71,366,985EPDNEW
RGD ID:8667381
Promoter ID:EPDNEW_M11722
Type:multiple initiation site
Name:Use1_1
Description:Mus musculus unconventional SNARE in the ER 1 homolog , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M11721  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38871,367,225 - 71,367,285EPDNEW
RGD ID:6843882
Promoter ID:MM_KWN:54770
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000110053,   NM_001145780,   NM_025917,   OTTMUST00000052794,   OTTMUST00000052795,   OTTMUST00000052797,   OTTMUST00000052798,   OTTMUST00000052799,   OTTMUST00000074346,   OTTMUST00000074347,   UC009MCS.1,   UC009MCT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,889,816 - 73,891,612 (+)MPROMDB
RGD ID:6843863
Promoter ID:MM_KWN:54771
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   BoneMarrow_0Hour,   Brain,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000052800
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,892,041 - 73,893,192 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1914273 AgrOrtholog
Ensembl Genes ENSMUSG00000002395 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000019169 ENTREZGENE
  ENSMUST00000019169.8 UniProtKB/Swiss-Prot
  ENSMUST00000110053 ENTREZGENE
  ENSMUST00000110053.9 UniProtKB/TrEMBL
  ENSMUST00000110054.8 UniProtKB/Swiss-Prot
  ENSMUST00000139541.8 UniProtKB/TrEMBL
InterPro Vesicle_transport_protein_Use1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67023 UniProtKB/Swiss-Prot
MGD MGI:1914273 ENTREZGENE
NCBI Gene 67023 ENTREZGENE
PANTHER PTHR13050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VESICLE TRANSPORT PROTEIN USE1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Use1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Use1 PhenoGen
UniProt D3Z6D3_MOUSE UniProtKB/TrEMBL
  E9Q496 ENTREZGENE, UniProtKB/TrEMBL
  Q05CJ0_MOUSE UniProtKB/TrEMBL
  Q3TUK0 ENTREZGENE
  Q5I940 ENTREZGENE, UniProtKB/TrEMBL
  Q80V73 ENTREZGENE
  Q99MB6 ENTREZGENE
  Q9CQ56 ENTREZGENE
  Q9CYN8_MOUSE UniProtKB/TrEMBL
  USE1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3TUK0 UniProtKB/Swiss-Prot
  Q80V73 UniProtKB/Swiss-Prot
  Q99MB6 UniProtKB/Swiss-Prot