Sgf29 (SAGA complex associated factor 29) - Rat Genome Database

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Gene: Sgf29 (SAGA complex associated factor 29) Mus musculus
Analyze
Symbol: Sgf29
Name: SAGA complex associated factor 29
RGD ID: 1332198
MGI Page MGI
Description: Enables methylation-dependent protein binding activity. Involved in several processes, including regulation of DNA repair; regulation of cell division; and regulation of embryonic development. Part of ATAC complex. Is expressed in genital tubercle; limb; and limb mesenchyme. Human ortholog(s) of this gene implicated in diabetic retinopathy. Orthologous to human SGF29 (SAGA complex associated factor 29).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700023O11Rik; 9530025I05Rik; Ccdc101; coiled-coil domain containing 101; coiled-coil domain-containing protein 101; SAGA complex-associated factor 29; SAGA-associated factor 29; SAGA-associated factor 29 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,247,558 - 126,271,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,248,481 - 126,272,097 (+)EnsemblGRCm39 Ensembl
GRCm387126,648,386 - 126,672,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,649,309 - 126,672,925 (+)EnsemblGRCm38mm10GRCm38
MGSCv377133,792,823 - 133,816,293 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,440,519 - 126,463,927 (+)NCBIMGSCv36mm8
Celera7126,498,036 - 126,520,262 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genome-wide meta-analysis for severe diabetic retinopathy. Grassi MA, etal., Hum Mol Genet. 2011 Jun 15;20(12):2472-81. doi: 10.1093/hmg/ddr121. Epub 2011 Mar 26.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Tudor: a versatile family of histone methylation 'readers'. Lu R and Wang GG, Trends Biochem Sci. 2013 Nov;38(11):546-55. doi: 10.1016/j.tibs.2013.08.002. Epub 2013 Sep 10.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. Readout of epigenetic modifications. Patel DJ and Wang Z, Annu Rev Biochem. 2013;82:81-118. doi: 10.1146/annurev-biochem-072711-165700.
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. ATAC-king the complexity of SAGA during evolution. Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
11. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11564863   PMID:12477932   PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18206972  
PMID:18799693   PMID:19103755   PMID:19114550   PMID:19936620   PMID:20059953   PMID:20508642   PMID:20562830   PMID:21267068   PMID:21873635   PMID:22922362   PMID:31138677   PMID:32325033  
PMID:34795452   PMID:35210392  


Genomics

Comparative Map Data
Sgf29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397126,247,558 - 126,271,951 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7126,248,481 - 126,272,097 (+)EnsemblGRCm39 Ensembl
GRCm387126,648,386 - 126,672,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7126,649,309 - 126,672,925 (+)EnsemblGRCm38mm10GRCm38
MGSCv377133,792,823 - 133,816,293 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367126,440,519 - 126,463,927 (+)NCBIMGSCv36mm8
Celera7126,498,036 - 126,520,262 (+)NCBICelera
Cytogenetic Map7F3NCBI
cM Map769.23NCBI
SGF29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381628,553,920 - 28,591,790 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1628,553,915 - 28,591,790 (+)EnsemblGRCh38hg38GRCh38
GRCh371628,565,241 - 28,603,111 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361628,472,758 - 28,510,610 (+)NCBINCBI36Build 36hg18NCBI36
Celera1627,603,201 - 27,638,545 (-)NCBICelera
Cytogenetic Map16p11.2NCBI
HuRef1626,590,877 - 26,628,721 (+)NCBIHuRef
CHM1_11629,577,000 - 29,615,311 (+)NCBICHM1_1
T2T-CHM13v2.01628,803,905 - 28,857,252 (-)NCBIT2T-CHM13v2.0
Sgf29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81190,668,803 - 190,702,500 (+)NCBIGRCr8
mRatBN7.21181,238,458 - 181,271,931 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,238,468 - 181,274,781 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,589,650 - 189,623,137 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01196,775,723 - 196,809,207 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01189,443,129 - 189,476,613 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01198,066,974 - 198,100,494 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1198,067,066 - 198,100,493 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01205,046,229 - 205,079,493 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41185,795,458 - 185,829,112 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11185,945,392 - 185,978,994 (+)NCBI
Celera1178,895,951 - 178,929,406 (+)NCBICelera
Cytogenetic Map1q36NCBI
Sgf29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554936,759,426 - 6,774,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554936,759,426 - 6,774,796 (+)NCBIChiLan1.0ChiLan1.0
SGF29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21831,158,546 - 31,196,697 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11634,897,319 - 34,935,190 (-)NCBINHGRI_mPanPan1
PanPan1.11629,031,186 - 29,068,506 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1629,030,587 - 29,068,795 (+)Ensemblpanpan1.1panPan2
SGF29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1618,179,656 - 18,209,206 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl618,172,289 - 18,209,160 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha619,758,489 - 19,788,017 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0618,315,722 - 18,345,268 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl618,315,222 - 18,326,362 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1618,114,719 - 18,144,247 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0618,029,943 - 18,059,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0618,346,019 - 18,375,562 (-)NCBIUU_Cfam_GSD_1.0
Sgf29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344123,910,740 - 123,926,255 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650112,008,425 - 12,028,239 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650112,008,601 - 12,024,113 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SGF29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl318,354,799 - 18,387,856 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1318,354,798 - 18,387,930 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SGF29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1526,399,760 - 26,439,616 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl526,399,677 - 26,439,530 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660683,090,059 - 3,167,428 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sgf29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478213,054,343 - 13,072,515 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478213,054,643 - 13,076,640 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sgf29
828 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1433
Count of miRNA genes:558
Interacting mature miRNAs:689
Transcripts:ENSMUST00000032956, ENSMUST00000123274, ENSMUST00000123382, ENSMUST00000123571, ENSMUST00000126570, ENSMUST00000129786, ENSMUST00000138794, ENSMUST00000152231
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
4142312Nilac4_mnicotine induced locomotor activity 4 (mouse)Not determined7102485219136485380Mouse
5491192Mobq1_mmultigenic obesity QTL 1 (mouse)Not determined7105250663139250811Mouse
13524852Asrq7a_macoustic startle response 7a (mouse)7105350008139350008Mouse
14700684Civq1_mcerebral infarct volume QTL 1 (mouse)7109707335143707335Mouse
14700687Civq5_mcerebral infarct volume QTL 5 (mouse)7109707335143707335Mouse
14700688Civq6_mcerebral infarct volume QTL 6 (mouse)7109707335143707335Mouse
11059562Lmr21b_mleishmaniasis resistance 21b (mouse)7110967235144967336Mouse
10402499Lmr21_mleishmaniasis resistance 21 (mouse)Not determined7110967235144967336Mouse
1302032Alcp12_malcohol preference locus 12 (mouse)Not determined7111166122144995196Mouse
1301898Alcp14_malcohol preference locus 14 (mouse)Not determined7111166122144995196Mouse
1300670Sluc19_msusceptibility to lung cancer 19 (mouse)Not determined7111166122144995196Mouse
4142444Femwf5_mfemur work to failure 5 (mouse)Not determined112552248144995196Mouse
1300747Skts2_mskin tumor susceptibility 2 (mouse)Not determined7112922733144995196Mouse
38501072Stsl7_mSalmonella typhimurium susceptibility locus 7 (mouse)7115699235128501724Mouse
1300677Bmd9_mbone mineral density 9 (mouse)Not determined7116634089144995196Mouse
15092059Wogrme1_mweek one growth rate, maternal effect 1 (mouse)7117199227134101729Mouse
11059561Lmr21a_mleishmaniasis resistance 21a (mouse)7117750722127967336Mouse
1357711Adbg1_madult body growth 1 (mouse)Not determined7118693381144398314Mouse
1301773Stheal7_msoft tissue heal 7 (mouse)Not determined7119132573144995196Mouse
1357613Bsbob2_mBSB obesity 2 (mouse)Not determined7122250663128819324Mouse
1301903Tlsm1_mthymic lymphoma susceptible 1 (mouse)Not determined7122250663135170901Mouse
38501066Tip2_mtuberculosis immunophenotype 2, spleen CFU (mouse)7124299223126899172Mouse
4141945Il4ppq_mIL-4 producing potential QTL (mouse)Not determined7124513662128819324Mouse

Markers in Region
AI266890  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387126,672,992 - 126,673,105UniSTSGRCm38
MGSCv377133,816,506 - 133,816,619UniSTSGRCm37
Celera7126,520,475 - 126,520,588UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map7F4UniSTS
cM Map74.0UniSTS
Whitehead/MRC_RH71291.91UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000032956   ⟹   ENSMUSP00000032956
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,248,481 - 126,272,097 (+)Ensembl
GRCm38.p6 Ensembl7126,649,309 - 126,672,925 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123274
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,248,494 - 126,263,271 (+)Ensembl
GRCm38.p6 Ensembl7126,649,322 - 126,664,099 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123382
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,271,203 - 126,271,951 (+)Ensembl
GRCm38.p6 Ensembl7126,672,031 - 126,672,779 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,248,481 - 126,263,176 (+)Ensembl
GRCm38.p6 Ensembl7126,649,309 - 126,664,004 (+)Ensembl
RefSeq Acc Id: ENSMUST00000126570   ⟹   ENSMUSP00000145654
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,248,484 - 126,264,122 (+)Ensembl
GRCm38.p6 Ensembl7126,649,312 - 126,664,950 (+)Ensembl
RefSeq Acc Id: ENSMUST00000129786   ⟹   ENSMUSP00000145680
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,270,749 - 126,271,564 (+)Ensembl
GRCm38.p6 Ensembl7126,671,577 - 126,672,392 (+)Ensembl
RefSeq Acc Id: ENSMUST00000138794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,262,965 - 126,269,860 (+)Ensembl
GRCm38.p6 Ensembl7126,663,793 - 126,670,688 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,248,519 - 126,271,053 (+)Ensembl
GRCm38.p6 Ensembl7126,649,347 - 126,671,881 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205507   ⟹   ENSMUSP00000146122
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,248,574 - 126,271,411 (+)Ensembl
GRCm38.p6 Ensembl7126,649,402 - 126,672,239 (+)Ensembl
RefSeq Acc Id: ENSMUST00000206359   ⟹   ENSMUSP00000145562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7126,260,244 - 126,271,490 (+)Ensembl
GRCm38.p6 Ensembl7126,661,072 - 126,672,318 (+)Ensembl
RefSeq Acc Id: NM_029339   ⟹   NP_083615
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,248,481 - 126,271,951 (+)NCBI
GRCm387126,649,309 - 126,672,779 (+)NCBI
MGSCv377133,792,823 - 133,816,293 (+)RGD
Celera7126,498,036 - 126,520,262 (+)RGD
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017312365   ⟹   XP_017167854
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397126,247,558 - 126,271,951 (+)NCBI
GRCm387126,648,386 - 126,672,779 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_083615   ⟸   NM_029339
- UniProtKB: Q8R0I6 (UniProtKB/Swiss-Prot),   Q9DA08 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017167854   ⟸   XM_017312365
- Peptide Label: isoform X1
- UniProtKB: Q8R0I6 (UniProtKB/Swiss-Prot),   Q9DA08 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000032956   ⟸   ENSMUST00000032956
RefSeq Acc Id: ENSMUSP00000145562   ⟸   ENSMUST00000206359
RefSeq Acc Id: ENSMUSP00000145654   ⟸   ENSMUST00000126570
RefSeq Acc Id: ENSMUSP00000146122   ⟸   ENSMUST00000205507
RefSeq Acc Id: ENSMUSP00000145680   ⟸   ENSMUST00000129786
Protein Domains
SGF29 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DA08-F1-model_v2 AlphaFold Q9DA08 1-293 view protein structure

Promoters
RGD ID:8665641
Promoter ID:EPDNEW_M10813
Type:initiation region
Name:Sgf29_1
Description:Mus musculus SAGA complex associated factor 29 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387126,649,332 - 126,649,392EPDNEW
RGD ID:6840783
Promoter ID:MM_KWN:52688
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   MEF_B4
Transcripts:OTTMUST00000062164,   OTTMUST00000062165,   OTTMUST00000062166,   OTTMUST00000062167,   OTTMUST00000062169
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,792,686 - 133,793,186 (+)MPROMDB
RGD ID:6840784
Promoter ID:MM_KWN:52691
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day3,   Kidney,   Liver,   Lung,   Spleen
Transcripts:OTTMUST00000062170,   OTTMUST00000062171
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367133,814,251 - 133,815,272 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922815 AgrOrtholog
Ensembl Genes ENSMUSG00000030714 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032956 ENTREZGENE
  ENSMUST00000032956.10 UniProtKB/Swiss-Prot
  ENSMUST00000126570.8 UniProtKB/TrEMBL
  ENSMUST00000129786.3 UniProtKB/TrEMBL
  ENSMUST00000205507.2 UniProtKB/TrEMBL
  ENSMUST00000206359.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro SGF29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SGF29_tudor-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  Tudor_SGF29_rpt1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor_SGF29_rpt2 UniProtKB/Swiss-Prot
KEGG Report mmu:75565 UniProtKB/Swiss-Prot
MGD MGI:1922815 ENTREZGENE
NCBI Gene 75565 ENTREZGENE
PANTHER PTHR21539 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SAGA-ASSOCIATED FACTOR 29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF1325 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sgf29 PhenoGen
PROSITE SGF29_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0U1RNH1_MOUSE UniProtKB/TrEMBL
  A0A0U1RNP8_MOUSE UniProtKB/TrEMBL
  A0A0U1RNS1_MOUSE UniProtKB/TrEMBL
  A0A0U1RPT9_MOUSE UniProtKB/TrEMBL
  Q8R0I6 ENTREZGENE
  Q9DA08 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8R0I6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-17 Sgf29  SAGA complex associated factor 29  Ccdc101  coiled-coil domain containing 101  Symbol and/or name change 5135510 APPROVED