Fbxo38 (F-box protein 38) - Rat Genome Database

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Gene: Fbxo38 (F-box protein 38) Mus musculus
Analyze
Symbol: Fbxo38
Name: F-box protein 38
RGD ID: 1332184
MGI Page MGI
Description: Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; positive regulation of T cell mediated immune response to tumor cell; and protein K48-linked ubiquitination. Predicted to act upstream of or within positive regulation of neuron projection development. Located in cytoplasm and nucleus. Is expressed in several structures, including central nervous system; limb bud; retina; spleen; and testis. Human ortholog(s) of this gene implicated in autosomal dominant distal hereditary motor neuronopathy 6. Orthologous to human FBXO38 (F-box protein 38).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 6030410I24Rik; AU044865; AW214031; F-box only protein 38; F-box protein modulating KLF7 activity; modulator of KLF7 activity; Moka; SP3; SP329
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391862,637,130 - 62,681,934 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1862,637,226 - 62,681,766 (-)EnsemblGRCm39 Ensembl
GRCm381862,504,059 - 62,548,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1862,504,155 - 62,548,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371862,663,713 - 62,708,397 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361862,629,529 - 62,674,083 (-)NCBIMGSCv36mm8
Celera1863,775,869 - 63,823,039 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1835.11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IDA,ISO)
nucleus  (IBA,IDA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Systematic analysis and nomenclature of mammalian F-box proteins. Jin J, etal., Genes Dev 2004 Nov 1;18(21):2573-80.
2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
3. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14729953   PMID:15489334   PMID:15782199  
PMID:16141072   PMID:16141073   PMID:16602821   PMID:16990251   PMID:18799693   PMID:19521500   PMID:21873635   PMID:24207122   PMID:30487606   PMID:35769260   PMID:37938970  


Genomics

Comparative Map Data
Fbxo38
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391862,637,130 - 62,681,934 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1862,637,226 - 62,681,766 (-)EnsemblGRCm39 Ensembl
GRCm381862,504,059 - 62,548,863 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1862,504,155 - 62,548,695 (-)EnsemblGRCm38mm10GRCm38
MGSCv371862,663,713 - 62,708,397 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361862,629,529 - 62,674,083 (-)NCBIMGSCv36mm8
Celera1863,775,869 - 63,823,039 (-)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1835.11NCBI
FBXO38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385148,383,958 - 148,442,836 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5148,383,935 - 148,442,836 (+)EnsemblGRCh38hg38GRCh38
GRCh375147,763,521 - 147,822,399 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365147,743,739 - 147,802,592 (+)NCBINCBI36Build 36hg18NCBI36
Celera5143,842,908 - 143,901,761 (+)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5142,910,539 - 142,969,456 (+)NCBIHuRef
CHM1_15147,196,208 - 147,255,098 (+)NCBICHM1_1
T2T-CHM13v2.05148,918,479 - 148,977,363 (+)NCBIT2T-CHM13v2.0
Fbxo38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81858,227,253 - 58,274,320 (-)NCBIGRCr8
mRatBN7.21855,956,950 - 56,004,013 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1855,956,959 - 56,003,961 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1858,050,603 - 58,097,662 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01858,764,902 - 58,811,954 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01856,580,810 - 56,627,813 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01857,827,391 - 57,874,515 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1857,827,392 - 57,866,741 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01857,053,464 - 57,100,790 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41858,517,371 - 58,564,412 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11858,590,970 - 58,629,285 (-)NCBI
Celera1854,102,507 - 54,149,633 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
Fbxo38
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554155,841,038 - 5,889,110 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554155,841,269 - 5,888,830 (-)NCBIChiLan1.0ChiLan1.0
FBXO38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24143,597,425 - 143,678,187 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15141,736,975 - 141,817,462 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05143,814,446 - 143,873,919 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15149,823,271 - 149,882,592 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5149,834,109 - 149,881,903 (+)Ensemblpanpan1.1panPan2
FBXO38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1460,360,543 - 60,416,727 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl460,320,648 - 60,417,205 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha460,124,736 - 60,180,903 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0460,849,108 - 60,905,329 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl460,848,833 - 60,905,299 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1460,629,374 - 60,685,535 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0460,756,046 - 60,812,233 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0461,274,359 - 61,330,551 (-)NCBIUU_Cfam_GSD_1.0
Fbxo38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213144,745,057 - 144,795,548 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365046,318,940 - 6,369,480 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365046,319,026 - 6,369,487 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBXO38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2149,674,448 - 149,722,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12149,674,300 - 149,722,875 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22156,358,976 - 156,406,051 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBXO38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12351,020,119 - 51,079,317 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2351,020,127 - 51,079,308 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603426,675,742 - 26,734,991 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbxo38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247747,798,369 - 7,850,056 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247747,798,407 - 7,849,840 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fbxo38
1606 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:170
Count of miRNA genes:156
Interacting mature miRNAs:159
Transcripts:ENSMUST00000048688
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
1302163Bmd16_mbone mineral density 16 (mouse)Not determined182966791463668060Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse

Markers in Region
AW214031  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,504,350 - 62,504,462UniSTSGRCm38
MGSCv371862,664,004 - 62,664,116UniSTSGRCm37
Celera1863,776,160 - 63,776,272UniSTS
Cytogenetic Map18E1UniSTS
Whitehead/MRC_RH18808.64UniSTS
AU044865  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381862,504,327 - 62,504,412UniSTSGRCm38
MGSCv371862,663,981 - 62,664,066UniSTSGRCm37
Celera1863,776,137 - 63,776,222UniSTS
Cytogenetic Map18E1UniSTS
Whitehead/MRC_RH18806.8UniSTS
Klf7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18E1UniSTS
Cytogenetic Map1C1-C3UniSTS
cM Map132.31UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001361088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001361091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_134136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525501 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030250266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160926 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160927 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036160932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC165083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY267463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC056348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BF456006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY131284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF336982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JF337019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000048688   ⟹   ENSMUSP00000047541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,637,226 - 62,681,766 (-)Ensembl
GRCm38.p6 Ensembl1862,504,155 - 62,548,695 (-)Ensembl
RefSeq Acc Id: ENSMUST00000235807   ⟹   ENSMUSP00000158310
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,666,634 - 62,681,755 (-)Ensembl
GRCm38.p6 Ensembl1862,533,563 - 62,548,684 (-)Ensembl
RefSeq Acc Id: ENSMUST00000236904
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,646,942 - 62,663,842 (-)Ensembl
GRCm38.p6 Ensembl1862,513,871 - 62,530,771 (-)Ensembl
RefSeq Acc Id: ENSMUST00000237378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1862,652,448 - 62,653,800 (-)Ensembl
GRCm38.p6 Ensembl1862,519,377 - 62,520,729 (-)Ensembl
RefSeq Acc Id: NM_001361088   ⟹   NP_001348017
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,130 - 62,681,934 (-)NCBI
GRCm381862,504,059 - 62,548,863 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361089   ⟹   NP_001348018
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,130 - 62,681,934 (-)NCBI
GRCm381862,504,059 - 62,548,863 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361090   ⟹   NP_001348019
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,130 - 62,681,934 (-)NCBI
GRCm381862,504,059 - 62,548,863 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001361091   ⟹   NP_001348020
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,130 - 62,676,923 (-)NCBI
GRCm381862,504,059 - 62,543,852 (-)NCBI
Sequence:
RefSeq Acc Id: NM_134136   ⟹   NP_598897
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,130 - 62,681,934 (-)NCBI
GRCm381862,504,059 - 62,548,863 (-)NCBI
MGSCv371862,663,713 - 62,708,397 (-)RGD
Celera1863,775,869 - 63,823,039 (-)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006525501   ⟹   XP_006525564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,838 (-)NCBI
GRCm381862,504,061 - 62,548,840 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250263   ⟹   XP_030106123
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,219 - 62,681,821 (-)NCBI
GRCm381862,504,061 - 62,548,759 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250264   ⟹   XP_030106124
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,219 - 62,677,997 (-)NCBI
GRCm381862,504,061 - 62,544,926 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250265   ⟹   XP_030106125
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,770 (-)NCBI
GRCm381862,504,151 - 62,548,748 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030250266   ⟹   XP_030106126
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,806 (-)NCBI
GRCm381862,504,061 - 62,548,748 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160923   ⟹   XP_036016816
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,838 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160924   ⟹   XP_036016817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,929 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160925   ⟹   XP_036016818
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,293 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160926   ⟹   XP_036016819
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,838 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160927   ⟹   XP_036016820
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,932 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160928   ⟹   XP_036016821
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,678,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160929   ⟹   XP_036016822
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,838 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160930   ⟹   XP_036016823
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,770 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160932   ⟹   XP_036016825
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391862,637,132 - 62,681,770 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001348017 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348018 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348019 (Get FASTA)   NCBI Sequence Viewer  
  NP_001348020 (Get FASTA)   NCBI Sequence Viewer  
  NP_598897 (Get FASTA)   NCBI Sequence Viewer  
  XP_006525564 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106123 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106124 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106125 (Get FASTA)   NCBI Sequence Viewer  
  XP_030106126 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016816 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016817 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016818 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016819 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016820 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016821 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016822 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016823 (Get FASTA)   NCBI Sequence Viewer  
  XP_036016825 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH23176 (Get FASTA)   NCBI Sequence Viewer  
  AAH56348 (Get FASTA)   NCBI Sequence Viewer  
  AAP31028 (Get FASTA)   NCBI Sequence Viewer  
  BAC27250 (Get FASTA)   NCBI Sequence Viewer  
  BAC27358 (Get FASTA)   NCBI Sequence Viewer  
  BAC28826 (Get FASTA)   NCBI Sequence Viewer  
  BAC40718 (Get FASTA)   NCBI Sequence Viewer  
  EDL09738 (Get FASTA)   NCBI Sequence Viewer  
  EDL09739 (Get FASTA)   NCBI Sequence Viewer  
  EDL09740 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000047541
  ENSMUSP00000047541.7
  ENSMUSP00000158310.2
GenBank Protein Q8BMI0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_598897   ⟸   NM_134136
- Peptide Label: isoform 4
- UniProtKB: Q8BTQ4 (UniProtKB/Swiss-Prot),   Q8C0H4 (UniProtKB/Swiss-Prot),   Q8BMI0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525564   ⟸   XM_006525501
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: NP_001348018   ⟸   NM_001361089
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001348017   ⟸   NM_001361088
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001348019   ⟸   NM_001361090
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001348020   ⟸   NM_001361091
- Peptide Label: isoform 3
RefSeq Acc Id: XP_030106123   ⟸   XM_030250263
- Peptide Label: isoform X3
- UniProtKB: Q8BTQ4 (UniProtKB/Swiss-Prot),   Q8BMI0 (UniProtKB/Swiss-Prot),   Q8C0H4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106126   ⟸   XM_030250266
- Peptide Label: isoform X9
RefSeq Acc Id: XP_030106124   ⟸   XM_030250264
- Peptide Label: isoform X3
- UniProtKB: Q8BTQ4 (UniProtKB/Swiss-Prot),   Q8BMI0 (UniProtKB/Swiss-Prot),   Q8C0H4 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030106125   ⟸   XM_030250265
- Peptide Label: isoform X8
RefSeq Acc Id: ENSMUSP00000047541   ⟸   ENSMUST00000048688
RefSeq Acc Id: ENSMUSP00000158310   ⟸   ENSMUST00000235807
RefSeq Acc Id: XP_036016820   ⟸   XM_036160927
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016817   ⟸   XM_036160924
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016819   ⟸   XM_036160926
- Peptide Label: isoform X2
RefSeq Acc Id: XP_036016822   ⟸   XM_036160929
- Peptide Label: isoform X4
RefSeq Acc Id: XP_036016816   ⟸   XM_036160923
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016825   ⟸   XM_036160932
- Peptide Label: isoform X7
RefSeq Acc Id: XP_036016823   ⟸   XM_036160930
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036016818   ⟸   XM_036160925
- Peptide Label: isoform X1
RefSeq Acc Id: XP_036016821   ⟸   XM_036160928
- Peptide Label: isoform X2
Protein Domains
F-box

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8BMI0-F1-model_v2 AlphaFold Q8BMI0 1-1194 view protein structure

Promoters
RGD ID:13677982
Promoter ID:EPDNEW_M23140
Type:initiation region
Name:Fbxo38_1
Description:Mus musculus F-box protein 38 , transcript variant 5, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381862,548,738 - 62,548,798EPDNEW
RGD ID:6847496
Promoter ID:MM_ACW:25161
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:FBXO38.FSEP07,   FBXO38.JSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361862,674,456 - 62,674,956 (-)MPROMDB
RGD ID:6829235
Promoter ID:MM_KWN:25452
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_134136,   NM_177829,   OTTMUST00000083851,   UC008FDD.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361862,707,361 - 62,708,722 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2444639 AgrOrtholog
Ensembl Genes ENSMUSG00000042211 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000048688 ENTREZGENE
  ENSMUST00000048688.8 UniProtKB/Swiss-Prot
  ENSMUST00000235807.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1280.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.80.10.10 UniProtKB/Swiss-Prot
InterPro F-box-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  F-box_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FBX38 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:107035 UniProtKB/Swiss-Prot
MGD MGI:2444639 ENTREZGENE
NCBI Gene 107035 ENTREZGENE
PANTHER F-BOX ONLY PROTEIN 38 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14753 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam F-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fbxo38 PhenoGen
Superfamily-SCOP RNI-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81383 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494BB05_MOUSE UniProtKB/TrEMBL
  FBX38_MOUSE UniProtKB/Swiss-Prot
  Q8BM64_MOUSE UniProtKB/TrEMBL
  Q8BMI0 ENTREZGENE
  Q8BTQ4 ENTREZGENE
  Q8C0H4 ENTREZGENE
  Q8R576_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8BTQ4 UniProtKB/Swiss-Prot
  Q8C0H4 UniProtKB/Swiss-Prot