Ybx2 (Y box protein 2) - Rat Genome Database

Name: Ybx2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ybx2 (Y box protein 2) Mus musculus

Analyze

Symbol:

Ybx2

Name:

Y box protein 2

RGD ID:

1332070

MGI Page

MGI

Description:

Is expressed in early conceptus; eye; gonad; and trunk somite. Orthologous to human YBX2 (Y-box binding protein 2); INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

FRGY2 homolog; germ cell-specific Y-box-binding protein; MGC118270; MSY; Msy2; Y-box protein MSY2; Y-box-binding protein 2

RGD Orthologs

Human

Rat

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	YBX2 (Y-box binding protein 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Ybx2 (Y box binding protein 2)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ybx2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	YBX2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	YBX2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ybx2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	YBX2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	YBX2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ybx2 (Y-box binding protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Ybx2 (Y box binding protein 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Homo sapiens (human):	YBX2 (Y-box binding protein 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup\|TreeFam)
Caenorhabditis elegans (roundworm):	cey-1	Alliance	DIOPT (Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	yps	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,826,711 - 69,832,429 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	69,826,622 - 69,832,431 (+)	Ensembl
GRCm38	11	69,935,805 - 69,941,604 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,935,796 - 69,941,605 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,749,401 - 69,755,101 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	69,752,170 - 69,757,792 (+)	NCBI			mm8
Celera	11	77,461,940 - 77,489,570 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

dyskeratosis congenita (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (EXP)

aflatoxin B1 (ISO)

allethrin (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (ISO)

butanal (ISO)

choline (EXP)

dicrotophos (ISO)

endosulfan (ISO)

folic acid (EXP)

glycine betaine (ISO)

L-methionine (EXP)

nickel atom (ISO)

pentanal (ISO)

silicon dioxide (ISO)

sunitinib (ISO)

trichloroethene (EXP)

valproic acid (EXP,ISO)

vancomycin (EXP)

vinclozolin (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA stabilization (IMP)

negative regulation of binding (IMP)

negative regulation of translation (IDA)

oocyte development (ISO)

oogenesis (IMP)

positive regulation of cold-induced thermogenesis (IMP)

regulation of gene expression (IBA)

spermatid development (IMP)

Cellular Component

cytoplasm (IDA,ISO)

nucleus (IBA)

polysome (IDA)

ribonucleoprotein complex (IDA)

Molecular Function

chromatin binding (IDA)

DNA binding (IEA)

lipid binding (IDA)

mRNA 3'-UTR binding (IDA)

mRNA binding (IDA)

nucleic acid binding (IBA)

ribonucleoprotein complex binding (IDA)

RNA binding (IEA)

translation regulator activity (IDA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal corpus luteum morphology (IAGP)

abnormal male germ cell apoptosis (IAGP)

abnormal ovary morphology (IAGP)

abnormal ovulation (IAGP)

abnormal zona pellucida morphology (IAGP)

arrest of spermatogenesis (IAGP)

azoospermia (IAGP)

decreased oocyte number (IAGP)

female infertility (IAGP)

impaired ovarian folliculogenesis (IAGP)

male infertility (IAGP)

ovary cysts (IAGP)

small ovary (IAGP)

small testis (IAGP)

References

References - curated


1.	MGD and Homologene mouse data transfer
2.	MGD data from the GO Consortium
3.	MGD IEA
4.	RGD automated import pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions
7.	Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.

Additional References at PubMed

PMID:9780336	PMID:10076007	PMID:10349636	PMID:10772793	PMID:11023867	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11564883	PMID:11566752	PMID:12297523	PMID:12466851
PMID:12477932	PMID:12648488	PMID:14736745	PMID:15031116	PMID:15326356	PMID:15665108	PMID:15824319	PMID:15944199	PMID:16141072	PMID:16141073	PMID:16690745	PMID:16954378
PMID:17015433	PMID:17035640	PMID:18606161	PMID:19597149	PMID:20059953	PMID:20075394	PMID:21613634	PMID:21621532	PMID:21677750	PMID:21873635	PMID:23151479	PMID:25336347
PMID:26646932	PMID:26773323	PMID:27929740	PMID:28378742	PMID:28970281	PMID:29087293	PMID:29329290	PMID:29688375	PMID:30295753	PMID:31598710

Genomics

Comparative Map Data

Ybx2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	69,826,711 - 69,832,429 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	11	69,826,622 - 69,832,431 (+)	Ensembl
GRCm38	11	69,935,805 - 69,941,604 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	69,935,796 - 69,941,605 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	69,749,401 - 69,755,101 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	69,752,170 - 69,757,792 (+)	NCBI			mm8
Celera	11	77,461,940 - 77,489,570 (+)	NCBI		Celera
Cytogenetic Map	11	B3	NCBI

YBX2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	7,288,263 - 7,294,639 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	7,288,254 - 7,294,639 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	7,191,582 - 7,197,958 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	7,132,295 - 7,138,600 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	17	7,216,218 - 7,222,523 (-)	NCBI
Cytogenetic Map	17	p13.1	NCBI
HuRef	17	7,082,931 - 7,089,197 (-)	NCBI		HuRef
CHM1_1	17	7,200,354 - 7,206,659 (-)	NCBI		CHM1_1

Ybx2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	54,659,719 - 54,665,371 (+)	NCBI
Rnor_6.0 Ensembl	10	56,546,710 - 56,551,863 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	10	56,546,689 - 56,552,339 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	10	56,291,832 - 56,297,457 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	56,780,431 - 56,786,061 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	56,794,180 - 56,799,676 (+)	NCBI
Celera	10	53,813,694 - 53,819,309 (+)	NCBI		Celera
Cytogenetic Map	10	q24	NCBI

Ybx2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955467	9,624,019 - 9,629,904 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955467	9,624,506 - 9,629,904 (+)	NCBI	ChiLan1.0	ChiLan1.0

YBX2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	7,306,548 - 7,312,632 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	7,306,548 - 7,312,632 (-)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	7,319,186 - 7,325,594 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

YBX2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	5	32,245,056 - 32,251,985 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	5	32,244,536 - 32,250,130 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Ybx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936595	574,264 - 579,959 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

YBX2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	52,635,383 - 52,641,651 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	52,635,383 - 52,642,443 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	139,910,595 - 139,916,577 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

YBX2
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	6,660,861 - 6,667,495 (-)	NCBI

Ybx2
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624786	9,909,464 - 9,915,335 (-)	NCBI

Position Markers

AI505953

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	69,916,472 - 69,916,554	UniSTS	GRCm38
MGSCv37	11	69,729,974 - 69,730,056	UniSTS	GRCm37
Celera	11	77,464,360 - 77,464,442	UniSTS
Cytogenetic Map	11	B3	UniSTS
Cytogenetic Map	11	B4	UniSTS
Whitehead/MRC_RH	11	912.86	UniSTS

Ybx2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	11	B4	UniSTS
cM Map	11		UniSTS

RH126545

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	19	17,693,264 - 17,693,509	UniSTS	GRCm38
GRCm38	11	69,916,745 - 69,916,994	UniSTS	GRCm38
MGSCv37	19	17,767,754 - 17,767,999	UniSTS	GRCm37
MGSCv37	11	69,730,247 - 69,730,496	UniSTS	GRCm37
Celera	11	77,464,633 - 77,464,882	UniSTS
Celera	19	18,373,033 - 18,373,278	UniSTS
Cytogenetic Map	11	B4	UniSTS
Cytogenetic Map	19	B	UniSTS
Cytogenetic Map	11	B3	UniSTS
cM Map	19	15.0	UniSTS
cM Map	11		UniSTS

Ybx2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	11	69,940,087 - 69,941,424	UniSTS	GRCm38
Celera	11	77,488,058 - 77,489,395	UniSTS
Cytogenetic Map	11	B4	UniSTS

Ybx2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	11	B4	UniSTS

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884453	Sklq16_m	skull length QTL 16, 16 week (mouse)					11	3300000	72800000	Mouse
13208559	Wght10_m	weight 10 (mouse)					11	4000000	89000000	Mouse
13208558	Lgth12_m	body length 12 (mouse)					11	4000000	95000000	Mouse
1300905	Scc6_m	colon tumor susceptibility 6 (mouse)			Not determined		11	6930277	89128908	Mouse
1357859	Lvrq7_m	liver weight QTL 7 (mouse)			Not determined		11	12318637	118131898	Mouse
39128214	Lwq20_m	liver weight QTL 20 (mouse)					11	12318637	118131898	Mouse
4141894	Nidd6k_m	Nidd6 on KK-A (mouse)			Not determined			19174204	97007000	Mouse
10412246	Dfs2_m	dental fluorosis suseptibility 2 (mouse)			Not determined		11	21857364	95990405	Mouse
13208569	Bmiq10_m	body mass index QTL 10 (mouse)					11	36000000	85000000	Mouse
1301328	Mol4_m	modifier of LPS-response 4 (mouse)			Not determined		11	36391750	83590530	Mouse
1301788	Lbw8_m	lupus NZB x NZW 8 (mouse)			Not determined		11	36612460	70618665	Mouse
1301896	Tria1_m	T-cell receptor induced activation 1 (mouse)			Not determined		11	36722738	70723028	Mouse
4141853	Skmw17_m	skeletal muscle weight 17 (mouse)			Not determined		11	37190115	71190238	Mouse
10766457	Nwa3_m	New Zealand White autoimmunity 3 (mouse)					11	38125289	72125383	Mouse
11532698	Sluc36a_m	susceptibility to lung cancer 36a (mouse)					11	42365791	76365904	Mouse
11532699	Sluc36b_m	susceptibility to lung cancer 36b (mouse)					11	42365791	76365904	Mouse
4142300	Ctrq3_m	C. trachomatis resistance QTL 3 (mouse)			Not determined		11	44739211	76963931	Mouse
4141367	Inf1_m	acute ozone induced inflammation (mouse)			Not determined			44739211	113167183	Mouse
4141000	Nidd3_m	non-insulin-dependent diabetes mellitus 3 (mouse)			Not determined			45151201	79151308	Mouse
1302021	Nidd1n_m	non-insulin-dependent diabetes mellitus 1 in NSY (mouse)			Not determined		11	45275046	80087498	Mouse
1357878	Mastr_m	modifier of astrocytoma (mouse)			Not determined		11	45817754	89927907	Mouse
1300765	Bbaa4_m	B.burgdorferi-associated arthritis 4 (mouse)			Not determined		11	46294341	80294436	Mouse
1301988	Bmd11_m	bone mineral density 11 (mouse)			Not determined		11	46428581	80428696	Mouse
1301830	Ssta4_m	susceptibility to Salmonella typhimurium antigens 4 (mouse)			Not determined		11	50187365	84187585	Mouse
13524840	Ppiq9a_m	prepulse inhibition QTL 9a (mouse)					11	52603559	86603559	Mouse
1300774	Pgia7_m	proteoglycan induced arthritis 7 (mouse)			Not determined		11	53499762	87499911	Mouse
4141830	Pregq1_m	pregnancy QTL 1 (mouse)			Not determined		11	54235926	83842826	Mouse
4141875	Etax9_m	ethanol induced ataxia 9 (mouse)			Not determined			55394159	72319101	Mouse
4142121	Tmc1m2_m	Tmc1 modifier 2 (mouse)			Not determined		11	56973201	114267131	Mouse
1300664	Etohcta9_m	ethanol conditioned taste aversion 9 (mouse)			Not determined		11	57863834	91863932	Mouse
10053682	Eae45_m	experimental allergic encephalomyelitis susceptibility 45 (mouse)			Not determined		11	58599729	74863932	Mouse
1300924	Ity2_m	immunity to S. typhimurium 2 (mouse)			Not determined		1	58617204	87804412	Mouse
4141982	Skts-fp2_m	skin tumor susceptibility in FVB and PWK 2 (mouse)			Not determined			58828440	85175703	Mouse
1301987	Pid3_m	prior incubation determinant 3 (mouse)			Not determined		11	61795994	88808902	Mouse
1301319	Dautb4_m	dopamine uptake transporter binding 4 (mouse)			Not determined		11	62265179	96265327	Mouse
27226730	Tibmd1_m	tibia midshaft diameter 1, 5 week (mouse)					11	62700000	109500000	Mouse
1301999	Lmr15_m	leishmaniasis resistance 15 (mouse)			Not determined		11	63428581	81939647	Mouse
10044004	Stzid3_m	streptozotocin induced diabetes susceptibility 3 (mouse)			Not determined		11	63428581	94173092	Mouse
11039501	Ltpr6a_m	Leishmania tropica response 6a (mouse)					11	64939510	98939647	Mouse
11039502	Ltpr6b_m	Leishmania tropica response 6b (mouse)					11	64939510	98939647	Mouse
11039515	Ltpr6_m	Leishmania tropica response 6 (mouse)					11	64939510	98939647	Mouse
1301546	Pcir2_m	periosteal circumference 2 (mouse)			Not determined		11	66842594	100842826	Mouse
1357766	Si5lq6_m	serum IGFBP-5 level QTL 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4141012	Femwf6_m	femur work to failure 6 (mouse)			Not determined			66842594	100842826	Mouse
1301833	Tbbmd5_m	total body bone mineral density 5 (mouse)			Not determined		11	66842594	100842826	Mouse
1300784	Prdt3_m	prion disease incubation time 3 (mouse)			Not determined		11	66842594	100842826	Mouse
1300628	Lgth6_m	body length 6 (mouse)			Not determined		11	66842594	100842826	Mouse
4142316	Ity2b_m	immunity to S. typhimurium 2b (mouse)			Not determined		11	67187365	79923086	Mouse
27226783	Tibl5_m	tibia length 5, 5 week (mouse)					11	68300000	102000000	Mouse
36049778	Ars6_m	antibody response to SARS-CoV 6, day 15, IgM (mouse)					11	69100000	72600000	Mouse
36049779	Ars7_m	antibody response to SARS-CoV 7, day 29, IgG1 (mouse)					11	69100000	72600000	Mouse
36049784	Ars8_m	antibody response to SARS-CoV 8, day 29, IgG2a+IgG2c (mouse)					11	69100000	72600000	Mouse
36049785	Ars9_m	antibody response to SARS-CoV 9, day 29, IgM (mouse)					11	69100000	72600000	Mouse
36049786	Ars10_m	antibody response to SARS-CoV 10, 4 days post-rechallenge, IgG2a+IgG2c (mouse)					11	69100000	72600000	Mouse
36049787	Ars11_m	antibody response to SARS-CoV 11, 4 days post-rechallenge, IgM (mouse)					11	69100000	72600000	Mouse
36049788	Ars1_m	antibody response to SARS-CoV 1, day 7, IgG1 (mouse)					11	69100000	72600000	Mouse
36049789	Ars2_m	antibody response to SARS-CoV 2, day 7, IgG2a+IgG2c (mouse)					11	69100000	72600000	Mouse
36049790	Ars3_m	antibody response to SARS-CoV 3, day 7, IgG2b (mouse)					11	69100000	72600000	Mouse
36049791	Ars4_m	antibody response to SARS-CoV 4, day 7, IgG3 (mouse)					11	69100000	72600000	Mouse
36049792	Ars5_m	antibody response to SARS-CoV 5, day 7, IgM (mouse)					11	69100000	72600000	Mouse
35673314	Ari2_m	antibody response to influenza 2, day 10, IgG3 (mouse)					11	69100000	72600000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1075
Count of miRNA genes:	411
Interacting mature miRNAs:	471
Transcripts:	ENSMUST00000018698, ENSMUST00000108601, ENSMUST00000130377, ENSMUST00000148395, ENSMUST00000149194
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001347634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_016875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036156844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036156845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036156846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036156847	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036156848	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF073954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF073955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK131732	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK131786	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK161439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL596185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC141112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR933541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV661016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000018698 ⟹ ENSMUSP00000018698

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	69,935,796 - 69,941,605 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000108601 ⟹ ENSMUSP00000104242

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	69,936,327 - 69,941,597 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000130377

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	69,939,847 - 69,940,662 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000148395

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	69,940,544 - 69,941,595 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000149194 ⟹ ENSMUSP00000136684

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	11	69,935,914 - 69,941,576 (+)	Ensembl

RefSeq Acc Id:

NM_001347634 ⟹ NP_001334563

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,827,154 - 69,832,429 (+)	NCBI
GRCm38	11	69,936,328 - 69,941,603 (+)	NCBI

Sequence:

show sequence

GTAGGCCTGGCCCGAAGGACTAATCATAACTAGTCCCGGAGCTGCCGAATAAACTATTAGTGGA
TTCCGCTGGAGGGAAATCTTGCCGCACCTTCATGAGCCGGAGGGCGGGGCAGGCAGGTTCAGCT
AAGGCTTTGGCAATCCAAGTCCTGGGCACAGTCAAATGGTTCAACGTCCGGAATGGTTACGGAT
TCATCAACAGGAATGACACCAAGGAGGATGTCTTTGTTCACCAGACAGCTATTAAGAGAAACAA
CCCCAGGAAGTTTCTGCGGAGTGTTGGAGATGGGGAGACTGTGGAGTTTGATGTCGTGGAAGGA
GAGAAGGGTGCAGAAGCTGCTAATGTCACTGGGCCTGGGGGGGTACCAGTGAAGGGCAGCCGCT
ATGCCCCTAATCGACGTAGGTTCCGGAGGTTCATTCCTCGGCCTCGCCCAGCTGCCCCACCACC
TATGGTGGCAGAGGCTCCCTCAGGTGGGACAGAACCTGGCAGCGAAGGGGAGCGGGCAGAGGAC
TCGGGGCAGCGACCTAGACGACGGCGCCCACCACCCTTCTTCTATCGAAGGCGGTTTGTGCGAG
GCCCTCGGCCCCCCAACCAGCAACAGCCCATAGAGGGCTCTGATGGGGTAGAACCCAAGGAGAC
AGCACCATTGGAGGGTGATCAACAGCAGGGAGATGAACGGGTGCCCCCACCCAGATTCCGGCCC
AGGTACCGAAGGCCTTTCCGCCCCAGGCCACCCCAACAGCCTACCACAGAAGGTGGGGATGGAG
AGACCAAGCCCAGCCAAGGCCCCACTGATGGCTCCCGGCCTGAGCCCCAGCGTCCACGAAACCG
TCCCTACTTCCAGCGGCGTCGGCAGCAGCCCCCTGGCCCCCGGCAGCCTATAGCCGCAGAGACC
TCCGCGCCTATCAACAGTGGGGACCCCCCCACCACCATACTGGAGTGATTCCAACTCAGAGGAC
ACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCTACCCAGCATCCCCCTCCCCA
CTTTCCCATAATTCATGACATCAAAACATCGGCTTTTCCCTTGAGACTCAGGAGGGCCAAAGCA
CCAGCCTTTGGCTTTTTTCTCTTTTTTTTCCCTCTCCCCTAGCATGGGTTGAAGGAAGGGATCC
ATCCTTATTGTTCCGAGGCATCACCTCCCTCCCTAGTCAGGCTGAGAAGGAACCAGCCAGCTCA
TACCTCCTCCTGATTGTTTTTCTTCCCCACCCATTTATTTTTTGTTTCCCTTCGACCTCCCCCC
AACACCTCTGAAGCCATTTTATGAACTGTCATGTGCCACCTGAGCCTCCAGTAAAAACAAAAGC
AGGCTTTCTTGT

hide sequence

RefSeq Acc Id:

NM_016875 ⟹ NP_058571

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,826,725 - 69,832,429 (+)	NCBI
GRCm38	11	69,935,899 - 69,941,603 (+)	NCBI
MGSCv37	11	69,749,401 - 69,755,101 (+)	RGD
Celera	11	77,461,940 - 77,489,570 (+)	RGD
cM Map	11		ENTREZGENE

Sequence:

show sequence

GGGAGGGGCCGGGGTGGTGGTGGTGGCAGCGGCGGAGGAGGCGGTGGCGGCGGGGGCCGGTACT
GGACCCGGCGGGATGAGCGAGGCGGAGGCGTCAGTGGTGGCGACAGCGGCCCCCGCGGCGACGG
TGCCCGCGACGGCGGCGGGGGTGGTAGCGGTGGTGGTACCGGTGCCCGCGGGAGAGCCGCAGAA
AGCAGGCGGCGGGGCGGGCGGCGGGGGCGGAGCCGCCTCTGGCCCCGCTGCTGGGACCCCCTCA
GCGCCCGGCCCTCGCACCCCTGGCAACCAGGCGACGGCGGCCTCGGGGACTCCCGCGCCCCCGG
CCCGGAGTCAGGCGGACAAGCCGGTGCTGGCAATCCAAGTCCTGGGCACAGTCAAATGGTTCAA
CGTCCGGAATGGTTACGGATTCATCAACAGGAATGACACCAAGGAGGATGTCTTTGTTCACCAG
ACAGCTATTAAGAGAAACAACCCCAGGAAGTTTCTGCGGAGTGTTGGAGATGGGGAGACTGTGG
AGTTTGATGTCGTGGAAGGAGAGAAGGGTGCAGAAGCTGCTAATGTCACTGGGCCTGGGGGGGT
ACCAGTGAAGGGCAGCCGCTATGCCCCTAATCGACGTAGGTTCCGGAGGTTCATTCCTCGGCCT
CGCCCAGCTGCCCCACCACCTATGGTGGCAGAGGCTCCCTCAGGTGGGACAGAACCTGGCAGCG
AAGGGGAGCGGGCAGAGGACTCGGGGCAGCGACCTAGACGACGGCGCCCACCACCCTTCTTCTA
TCGAAGGCGGTTTGTGCGAGGCCCTCGGCCCCCCAACCAGCAACAGCCCATAGAGGGCTCTGAT
GGGGTAGAACCCAAGGAGACAGCACCATTGGAGGGTGATCAACAGCAGGGAGATGAACGGGTGC
CCCCACCCAGATTCCGGCCCAGGTACCGAAGGCCTTTCCGCCCCAGGCCACCCCAACAGCCTAC
CACAGAAGGTGGGGATGGAGAGACCAAGCCCAGCCAAGGCCCCACTGATGGCTCCCGGCCTGAG
CCCCAGCGTCCACGAAACCGTCCCTACTTCCAGCGGCGTCGGCAGCAGCCCCCTGGCCCCCGGC
AGCCTATAGCCGCAGAGACCTCCGCGCCTATCAACAGTGGGGACCCCCCCACCACCATACTGGA
GTGATTCCAACTCAGAGGACACCCAGAGCTACCATCTGGTATCTGCCAGTTTCCAACTGACTCT
ACCCAGCATCCCCCTCCCCACTTTCCCATAATTCATGACATCAAAACATCGGCTTTTCCCTTGA
GACTCAGGAGGGCCAAAGCACCAGCCTTTGGCTTTTTTCTCTTTTTTTTCCCTCTCCCCTAGCA
TGGGTTGAAGGAAGGGATCCATCCTTATTGTTCCGAGGCATCACCTCCCTCCCTAGTCAGGCTG
AGAAGGAACCAGCCAGCTCATACCTCCTCCTGATTGTTTTTCTTCCCCACCCATTTATTTTTTG
TTTCCCTTCGACCTCCCCCCAACACCTCTGAAGCCATTTTATGAACTGTCATGTGCCACCTGAG
CCTCCAGTAAAAACAAAAGCAGGCTTTCTTGT

hide sequence

RefSeq Acc Id:

XM_036156844 ⟹ XP_036012737

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,826,711 - 69,832,424 (+)	NCBI

RefSeq Acc Id:

XM_036156845 ⟹ XP_036012738

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,826,711 - 69,832,424 (+)	NCBI

RefSeq Acc Id:

XM_036156846 ⟹ XP_036012739

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,827,234 - 69,832,424 (+)	NCBI

RefSeq Acc Id:

XM_036156847 ⟹ XP_036012740

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,830,414 - 69,832,424 (+)	NCBI

RefSeq Acc Id:

XM_036156848 ⟹ XP_036012741

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	11	69,830,064 - 69,832,424 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001334563	(Get FASTA)	NCBI Sequence Viewer
	NP_058571	(Get FASTA)	NCBI Sequence Viewer
	XP_036012737	(Get FASTA)	NCBI Sequence Viewer
	XP_036012738	(Get FASTA)	NCBI Sequence Viewer
	XP_036012739	(Get FASTA)	NCBI Sequence Viewer
	XP_036012740	(Get FASTA)	NCBI Sequence Viewer
	XP_036012741	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC98673	(Get FASTA)	NCBI Sequence Viewer
	AAC98674	(Get FASTA)	NCBI Sequence Viewer
	AAI00455	(Get FASTA)	NCBI Sequence Viewer
	AAI41113	(Get FASTA)	NCBI Sequence Viewer
	BAE36397	(Get FASTA)	NCBI Sequence Viewer
	EDL12492	(Get FASTA)	NCBI Sequence Viewer
	Q9Z2C8	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_058571 ⟸ NM_016875
- Peptide Label:	isoform 1
- UniProtKB:	B2RUF0 (UniProtKB/TrEMBL), Q3TTC8 (UniProtKB/TrEMBL), Q497N3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSEAEASVVATAAPAATVPATAAGVVAVVVPVPAGEPQKAGGGAGGGGGAASGPAAGTPSAPGP RTPGNQATAASGTPAPPARSQADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK RNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVKGSRYAPNRRRFRRFIPRPRPAA PPPMVAEAPSGGTEPGSEGERAEDSGQRPRRRRPPPFFYRRRFVRGPRPPNQQQPIEGSDGVEP KETAPLEGDQQQGDERVPPPRFRPRYRRPFRPRPPQQPTTEGGDGETKPSQGPTDGSRPEPQRP RNRPYFQRRRQQPPGPRQPIAAETSAPINSGDPPTTILE hide sequence

RefSeq Acc Id:	NP_001334563 ⟸ NM_001347634
- Peptide Label:	isoform 2
- UniProtKB:	A0A0A0MQD2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSMUSP00000136684 ⟸ ENSMUST00000149194

RefSeq Acc Id:

ENSMUSP00000104242 ⟸ ENSMUST00000108601

RefSeq Acc Id:

ENSMUSP00000018698 ⟸ ENSMUST00000018698

RefSeq Acc Id:	XP_036012737 ⟸ XM_036156844
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_036012738 ⟸ XM_036156845
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_036012739 ⟸ XM_036156846
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_036012741 ⟸ XM_036156848
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_036012740 ⟸ XM_036156847
- Peptide Label:	isoform X4

Protein Domains

CSD

Promoters

RGD ID:

6822502

Promoter ID:

MM_KWN:8153

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, Kidney

Transcripts:

OTTMUST00000013545, UC007JSX.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	11	69,752,381 - 69,754,182 (+)	MPROMDB

RGD ID:

8675258

Promoter ID:

EPDNEW_M15659

Type:

initiation region

Name:

Ybx2_1

Description:

Mus musculus Y box protein 2 , transcript variant 2, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	11	69,935,826 - 69,935,886	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1096372	AgrOrtholog
Ensembl Genes	ENSMUSG00000018554	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000018698	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000104242	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUSP00000136684	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000018698	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000108601	ENTREZGENE, UniProtKB/TrEMBL
	ENSMUST00000149194	UniProtKB/TrEMBL
InterPro	CSD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CSD_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CSP_DNA-bd	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:53422	UniProtKB/TrEMBL
MGD	MGI:1096372	ENTREZGENE
NCBI Gene	53422	ENTREZGENE
Pfam	CSD	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ybx2	PhenoGen
PRINTS	COLDSHOCK	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	CSD_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CSD_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CSP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0A0MQD2	ENTREZGENE, UniProtKB/TrEMBL
	B2RUF0	ENTREZGENE, UniProtKB/TrEMBL
	J3QNB9_MOUSE	UniProtKB/TrEMBL
	Q3TTC8	ENTREZGENE, UniProtKB/TrEMBL
	Q497N3	ENTREZGENE, UniProtKB/TrEMBL
	Q9Z2C8	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	Q5NCW8	UniProtKB/Swiss-Prot
	Q5NCW9	UniProtKB/Swiss-Prot
	Q9Z2C7	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar