Pih1d1 (PIH1 domain containing 1) - Rat Genome Database

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Gene: Pih1d1 (PIH1 domain containing 1) Mus musculus
Analyze
Symbol: Pih1d1
Name: PIH1 domain containing 1
RGD ID: 1332059
MGI Page MGI
Description: Predicted to enable several functions, including enzyme binding activity; histone reader activity; and phosphoprotein binding activity. Predicted to be involved in several processes, including positive regulation of macromolecule metabolic process; protein-containing complex assembly; and regulation of signal transduction. Located in nucleus. Orthologous to human PIH1D1 (PIH1 domain containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110061L23Rik; 4933413A04Rik; No; Nop17; nucleolar protein 17 homolog; PIH1 domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,800,036 - 44,809,489 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,803,727 - 44,809,489 (+)EnsemblGRCm39 Ensembl
GRCm38745,150,613 - 45,160,065 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,154,303 - 45,160,065 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,409,768 - 52,415,434 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,022,440 - 45,028,106 (+)NCBIMGSCv36mm8
Celera740,610,286 - 40,615,950 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
nucleolus  (IEA,ISO)
nucleus  (IDA,ISO)
pre-snoRNP complex  (IEA,ISO)
R2TP complex  (IBA,IEA,ISO)
ribonucleoprotein complex  (IBA)
RPAP3/R2TP/prefoldin-like complex  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:15782199   PMID:16141072   PMID:16141073   PMID:17335777   PMID:18799693  
PMID:19723774   PMID:20864032   PMID:21267068   PMID:21677750   PMID:21873635   PMID:24794838   PMID:32325033  


Genomics

Comparative Map Data
Pih1d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,800,036 - 44,809,489 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,803,727 - 44,809,489 (+)EnsemblGRCm39 Ensembl
GRCm38745,150,613 - 45,160,065 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,154,303 - 45,160,065 (+)EnsemblGRCm38mm10GRCm38
MGSCv37752,409,768 - 52,415,434 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36745,022,440 - 45,028,106 (+)NCBIMGSCv36mm8
Celera740,610,286 - 40,615,950 (+)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.16NCBI
PIH1D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,446,298 - 49,451,814 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,446,298 - 49,453,497 (-)EnsemblGRCh38hg38GRCh38
GRCh371949,949,555 - 49,955,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,641,368 - 54,646,879 (-)NCBINCBI36Build 36hg18NCBI36
Celera1946,817,056 - 46,822,614 (-)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,326,202 - 46,331,760 (-)NCBIHuRef
CHM1_11949,951,377 - 49,956,935 (-)NCBICHM1_1
T2T-CHM13v2.01952,443,763 - 52,449,272 (-)NCBIT2T-CHM13v2.0
Pih1d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,774,562 - 104,781,757 (+)NCBIGRCr8
mRatBN7.2195,639,597 - 95,645,295 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,639,592 - 95,645,290 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1101,026,613 - 101,030,686 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,499,280 - 109,503,353 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,789,689 - 102,793,758 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,151,240 - 101,156,806 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,152,734 - 101,156,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01102,216,207 - 102,221,753 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4195,632,212 - 95,636,284 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1195,710,322 - 95,714,394 (+)NCBI
Celera189,899,502 - 89,903,575 (+)NCBICelera
Cytogenetic Map1q22NCBI
Pih1d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,391,314 - 1,396,329 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555591,390,823 - 1,395,550 (+)NCBIChiLan1.0ChiLan1.0
PIH1D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,562,919 - 55,569,494 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,483,262 - 57,489,336 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,459,855 - 46,465,882 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,382,078 - 55,387,663 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,381,803 - 55,387,664 (-)Ensemblpanpan1.1panPan2
PIH1D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,045,466 - 107,051,281 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,045,697 - 107,051,236 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1106,628,774 - 106,634,554 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01107,565,568 - 107,571,349 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,565,763 - 107,571,345 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,238,579 - 107,244,359 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,880,914 - 106,886,696 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,721,786 - 107,727,567 (+)NCBIUU_Cfam_GSD_1.0
Pih1d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,703,088 - 21,708,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,321,136 - 3,326,093 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,321,278 - 3,326,720 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIH1D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,524,172 - 54,535,249 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1654,524,172 - 54,529,700 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,253,127 - 50,258,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PIH1D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,627,125 - 42,633,467 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl642,627,097 - 42,632,932 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607322,554,872 - 22,561,331 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pih1d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,757,344 - 4,762,181 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248324,757,367 - 4,761,974 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1534
Count of miRNA genes:538
Interacting mature miRNAs:653
Transcripts:ENSMUST00000085375, ENSMUST00000107811, ENSMUST00000107813, ENSMUST00000125953, ENSMUST00000130957, ENSMUST00000144597, ENSMUST00000150732, ENSMUST00000153973, ENSMUST00000154073
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301969Lbw5_mlupus NZB x NZW 5 (mouse)Not determined72684761560851775Mouse
38501071Stsl6_mSalmonella typhimurium susceptibility locus 6 (mouse)73419942551149748Mouse
1357586Mdmsc3_mmodifier of muscularity 3 (mouse)Not determined73444786968448018Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
39128210Lwq19_mliver weight QTL 19 (mouse)73349772758148965Mouse
11252140Fdr1_mfat response to dietary restriction 1 (mouse)74114882075148965Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
1357469Kidq5_mkidney weight QTL 5 (mouse)Not determined73349772758148965Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
4142003W3q10_mweight 3 weeks QTL 10 (mouse)Not determined3349772758148965Mouse
12790989Tgl6_mtriglyceride 6 (mouse)72754054961540549Mouse
1559000Ossc1_mosteosarcoma susceptibility 1 (mouse)Not determined73405302568053223Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
4141805Sle19_msystematic lupus erythematosus susceptibility 19 (mouse)Not determined3003248581135653Mouse
1357634Splq7_mspleen weight QTL 7 (mouse)Not determined73349772758148965Mouse
4141929Chlq18_mcirculating hormone level QTL 18 (mouse)Not determined74114882075148965Mouse
1300996Aorls2_maortic lesion size 2 (mouse)Not determined73239453266394681Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
1301514Rigs1_mradiation induced gastroschisis 1 (mouse)Not determined73628001592394346Mouse
1300878Skts1_mskin tumor susceptibility 1 (mouse)Not determined73789138671891582Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301175Ap7q_malcohol preference 7 QTL (mouse)Not determined73171484565715077Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
10402488Dipa2_mdrug induced psychomotor activation 2 (mouse)Not determined73842154872421684Mouse
4142102Tailq5_mtail length QTL 5 (mouse)Not determined3349772758148965Mouse
4141909W10q18_mweight 10 weeks QTL 18 (mouse)Not determined3349772758148965Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
1357883Epfq5_mepididymal fat pad weight QTL 5 (mouse)Not determined73349772758148965Mouse
10045622Heal20_mwound healing/regeneration 20 (mouse)Not determined73431688768317043Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
4142218W6q17_mweight 6 weeks QTL 17 (mouse)Not determined3349772758148965Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
25314303Vmm4_mvariable multisystem mineralization 4, kidney (mouse)73729942587049208Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse
25314301Vmm3_mvariable multisystem mineralization 3, lung (mouse)73729942572049748Mouse

Markers in Region
RH137082  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38745,159,695 - 45,159,991UniSTSGRCm38
MGSCv37752,415,065 - 52,415,361UniSTSGRCm37
Celera740,615,581 - 40,615,877UniSTS
Cytogenetic Map7B4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001278207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001285904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_029406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006541156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036153406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946555 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003946556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC149868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK016797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK186112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF437345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000085375   ⟹   ENSMUSP00000082490
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,803,738 - 44,809,488 (+)Ensembl
GRCm38.p6 Ensembl745,154,314 - 45,160,064 (+)Ensembl
Ensembl Acc Id: ENSMUST00000107811   ⟹   ENSMUSP00000103441
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,805,367 - 44,809,489 (+)Ensembl
GRCm38.p6 Ensembl745,155,943 - 45,160,065 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209400
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,808,272 - 44,809,240 (+)Ensembl
GRCm38.p6 Ensembl745,158,848 - 45,159,816 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209847   ⟹   ENSMUSP00000147265
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,803,773 - 44,807,167 (+)Ensembl
GRCm38.p6 Ensembl745,154,349 - 45,157,743 (+)Ensembl
Ensembl Acc Id: ENSMUST00000209954   ⟹   ENSMUSP00000147858
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,804,068 - 44,808,020 (+)Ensembl
GRCm38.p6 Ensembl745,154,644 - 45,158,596 (+)Ensembl
Ensembl Acc Id: ENSMUST00000210139   ⟹   ENSMUSP00000148186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,803,727 - 44,809,489 (+)Ensembl
GRCm38.p6 Ensembl745,154,303 - 45,160,065 (+)Ensembl
Ensembl Acc Id: ENSMUST00000211336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,809,017 - 44,809,483 (+)Ensembl
GRCm38.p6 Ensembl745,159,593 - 45,160,059 (+)Ensembl
Ensembl Acc Id: ENSMUST00000211414   ⟹   ENSMUSP00000147474
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,805,411 - 44,806,213 (+)Ensembl
GRCm38.p6 Ensembl745,155,987 - 45,156,789 (+)Ensembl
Ensembl Acc Id: ENSMUST00000211709   ⟹   ENSMUSP00000147567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl744,803,738 - 44,807,194 (+)Ensembl
GRCm38.p6 Ensembl745,154,314 - 45,157,770 (+)Ensembl
RefSeq Acc Id: NM_001278207   ⟹   NP_001265136
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,803,727 - 44,809,488 (+)NCBI
GRCm38745,154,303 - 45,160,064 (+)NCBI
Celera740,610,191 - 40,615,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001285904   ⟹   NP_001272833
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,805,253 - 44,809,489 (+)NCBI
GRCm38745,155,829 - 45,160,065 (+)NCBI
Celera740,610,191 - 40,615,950 (+)NCBI
Sequence:
RefSeq Acc Id: NM_029406   ⟹   NP_083682
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,803,727 - 44,809,488 (+)NCBI
GRCm38745,154,303 - 45,160,064 (+)NCBI
MGSCv37752,409,768 - 52,415,434 (+)RGD
Celera740,610,191 - 40,615,950 (+)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006541156   ⟹   XP_006541219
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,804,231 - 44,809,489 (+)NCBI
GRCm38745,154,807 - 45,160,065 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036153406   ⟹   XP_036009299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,804,231 - 44,809,489 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003946555
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,800,036 - 44,809,483 (+)NCBI
GRCm38745,150,613 - 45,160,059 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003946556
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39744,800,036 - 44,809,483 (+)NCBI
GRCm38745,154,295 - 45,160,059 (+)NCBI
Sequence:
RefSeq Acc Id: NP_083682   ⟸   NM_029406
- UniProtKB: Q6NV90 (UniProtKB/Swiss-Prot),   Q9CQJ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001265136   ⟸   NM_001278207
- UniProtKB: Q6NV90 (UniProtKB/Swiss-Prot),   Q9CQJ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001272833   ⟸   NM_001285904
- UniProtKB: Q6NV90 (UniProtKB/Swiss-Prot),   Q9CQJ2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006541219   ⟸   XM_006541156
- Peptide Label: isoform X1
- UniProtKB: Q6NV90 (UniProtKB/Swiss-Prot),   Q9CQJ2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000082490   ⟸   ENSMUST00000085375
Ensembl Acc Id: ENSMUSP00000147567   ⟸   ENSMUST00000211709
Ensembl Acc Id: ENSMUSP00000103441   ⟸   ENSMUST00000107811
Ensembl Acc Id: ENSMUSP00000147474   ⟸   ENSMUST00000211414
Ensembl Acc Id: ENSMUSP00000148186   ⟸   ENSMUST00000210139
Ensembl Acc Id: ENSMUSP00000147265   ⟸   ENSMUST00000209847
Ensembl Acc Id: ENSMUSP00000147858   ⟸   ENSMUST00000209954
RefSeq Acc Id: XP_036009299   ⟸   XM_036153406
- Peptide Label: isoform X1
- UniProtKB: Q9CQJ2 (UniProtKB/Swiss-Prot),   Q6NV90 (UniProtKB/Swiss-Prot)
Protein Domains
PIH1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CQJ2-F1-model_v2 AlphaFold Q9CQJ2 1-290 view protein structure

Promoters
RGD ID:8663977
Promoter ID:EPDNEW_M10019
Type:initiation region
Name:Pih1d1_1
Description:Mus musculus PIH1 domain containing 1 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10021  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,154,341 - 45,154,401EPDNEW
RGD ID:8663981
Promoter ID:EPDNEW_M10021
Type:initiation region
Name:Pih1d1_2
Description:Mus musculus PIH1 domain containing 1 , transcript variant 3,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M10019  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38745,155,869 - 45,155,929EPDNEW
RGD ID:6841747
Promoter ID:MM_KWN:50358
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000107813,   OTTMUST00000057200,   OTTMUST00000057202,   OTTMUST00000057203,   OTTMUST00000057204
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,409,176 - 52,409,692 (+)MPROMDB
RGD ID:6841746
Promoter ID:MM_KWN:50360
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B6
Transcripts:ENSMUST00000107811,   OTTMUST00000057205
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,410,746 - 52,411,246 (+)MPROMDB
RGD ID:6841749
Promoter ID:MM_KWN:50361
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   MEF_B6
Transcripts:OTTMUST00000057206,   OTTMUST00000057207
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36752,413,516 - 52,414,016 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916095 AgrOrtholog
Ensembl Genes ENSMUSG00000003423 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000085375 ENTREZGENE
  ENSMUST00000085375.13 UniProtKB/Swiss-Prot
  ENSMUST00000107811 ENTREZGENE
  ENSMUST00000107811.4 UniProtKB/Swiss-Prot
  ENSMUST00000209847.2 UniProtKB/TrEMBL
  ENSMUST00000209954.2 UniProtKB/TrEMBL
  ENSMUST00000210139 ENTREZGENE
  ENSMUST00000210139.2 UniProtKB/Swiss-Prot
  ENSMUST00000211414.2 UniProtKB/TrEMBL
  ENSMUST00000211709.2 UniProtKB/TrEMBL
InterPro PIH1/Kintoun_subfamily UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIH1_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIH1D1/2/3_CS-like UniProtKB/Swiss-Prot
KEGG Report mmu:68845 UniProtKB/Swiss-Prot
MGD MGI:1916095 ENTREZGENE
NCBI Gene 68845 ENTREZGENE
PANTHER PIH1 DOMAIN-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PIH1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIH1_CS UniProtKB/Swiss-Prot
PhenoGen Pih1d1 PhenoGen
UniProt A0A1B0GQV4_MOUSE UniProtKB/TrEMBL
  A0A1B0GRD5_MOUSE UniProtKB/TrEMBL
  A0A1B0GRL0_MOUSE UniProtKB/TrEMBL
  A0A1B0GSA4_MOUSE UniProtKB/TrEMBL
  B0LAC0_MOUSE UniProtKB/TrEMBL
  PIHD1_MOUSE UniProtKB/Swiss-Prot
  Q6NV90 ENTREZGENE
  Q9CQJ2 ENTREZGENE
UniProt Secondary Q6NV90 UniProtKB/Swiss-Prot