Wdr7 (WD repeat domain 7) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Wdr7 (WD repeat domain 7) Mus musculus
Analyze
Symbol: Wdr7
Name: WD repeat domain 7
RGD ID: 1332042
MGI Page MGI
Description: Acts upstream of or within hematopoietic progenitor cell differentiation. Predicted to be active in synaptic vesicle. Is expressed in nervous system; sensory organ; and testis. Orthologous to human WDR7 (WD repeat domain 7).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AI462727; mKIAA0541; TGF-beta resistance associated; TGF-beta resistance-associated protein TRAG; TR; TRAG; WD repeat-containing protein 7
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391863,841,731 - 64,122,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1863,841,756 - 64,122,847 (+)EnsemblGRCm39 Ensembl
GRCm381863,708,498 - 63,989,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1863,708,685 - 63,989,776 (+)EnsemblGRCm38mm10GRCm38
MGSCv371863,868,349 - 64,149,414 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361863,834,064 - 64,115,129 (+)NCBIMGSCv36mm8
Celera1864,975,852 - 65,257,594 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1837.09NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10828621   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:15741177   PMID:15782199   PMID:16096065   PMID:16141072   PMID:16141073   PMID:16959763   PMID:17114649   PMID:21267068   PMID:21873635   PMID:24029230   PMID:26391954   PMID:26442671  
PMID:28671696   PMID:28706196   PMID:30068389   PMID:30562941   PMID:31253182   PMID:32325033   PMID:32554809   PMID:33601422   PMID:35449600  


Genomics

Comparative Map Data
Wdr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391863,841,731 - 64,122,831 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1863,841,756 - 64,122,847 (+)EnsemblGRCm39 Ensembl
GRCm381863,708,498 - 63,989,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1863,708,685 - 63,989,776 (+)EnsemblGRCm38mm10GRCm38
MGSCv371863,868,349 - 64,149,414 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361863,834,064 - 64,115,129 (+)NCBIMGSCv36mm8
Celera1864,975,852 - 65,257,594 (+)NCBICelera
Cytogenetic Map18E1NCBI
cM Map1837.09NCBI
WDR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381856,651,359 - 57,036,606 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1856,651,343 - 57,029,811 (+)EnsemblGRCh38hg38GRCh38
GRCh371854,318,590 - 54,697,023 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361852,469,614 - 52,848,034 (+)NCBINCBI36Build 36hg18NCBI36
Build 341852,490,744 - 52,848,019NCBI
Celera1851,035,752 - 51,414,043 (+)NCBICelera
Cytogenetic Map18q21.31NCBI
HuRef1851,029,979 - 51,409,374 (+)NCBIHuRef
CHM1_11854,314,100 - 54,692,481 (+)NCBICHM1_1
T2T-CHM13v2.01856,853,334 - 57,234,168 (+)NCBIT2T-CHM13v2.0
Wdr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81859,435,733 - 59,718,800 (+)NCBIGRCr8
mRatBN7.21857,165,482 - 57,448,568 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1857,165,488 - 57,448,540 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1859,244,603 - 59,527,677 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01859,961,647 - 60,244,242 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01857,789,361 - 58,072,387 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01859,096,636 - 59,396,312 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1859,096,643 - 59,396,318 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01858,326,473 - 58,346,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01858,366,969 - 58,612,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41859,872,228 - 60,143,140 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11859,945,428 - 60,216,341 (+)NCBI
Celera1855,319,130 - 55,585,646 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Wdr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540241,071,895 - 41,437,717 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540241,071,895 - 41,437,717 (+)NCBIChiLan1.0ChiLan1.0
WDR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21774,183,971 - 74,564,237 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11859,876,685 - 60,256,851 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01850,037,318 - 50,414,733 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11853,370,746 - 53,750,203 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1853,391,859 - 53,750,203 (+)Ensemblpanpan1.1panPan2
WDR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1118,806,400 - 19,158,064 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl118,808,729 - 19,140,820 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha119,789,217 - 20,142,478 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0118,687,979 - 19,041,439 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl118,689,073 - 19,041,460 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1118,744,101 - 19,097,594 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0118,641,774 - 18,993,083 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0118,910,869 - 19,264,010 (-)NCBIUU_Cfam_GSD_1.0
Wdr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494431,982,232 - 32,311,071 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364977,221,184 - 7,550,191 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364977,221,267 - 7,538,952 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1106,036,029 - 106,411,724 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11106,036,012 - 106,411,690 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21116,786,064 - 116,917,898 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WDR7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11822,686,757 - 23,073,813 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1822,726,258 - 23,073,806 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660602,488,287 - 2,878,338 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247922,182,921 - 2,591,245 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247922,183,348 - 2,592,539 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr7
9477 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:792
Count of miRNA genes:481
Interacting mature miRNAs:595
Transcripts:ENSMUST00000072726
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357603Mom3_mmodifier of Min 3 (mouse)Not determined181403002367098962Mouse
25823173Hrsq12_mhost response to SARS QTL 12, hemorrhage (mouse)182489588178339555Mouse
12880412V125Dq12_mvitamin D active form serum level QTL 12 (mouse)183023306764233067Mouse
1300685Scc5_mcolon tumor susceptibility 5 (mouse)Not determined183198848065988629Mouse
1357690Vtbt19_mvertebral trabecular bone trait 19 (mouse)Not determined183309104367091221Mouse
1301771Pcyts6_mplasmacytoma susceptibility 6 (mouse)Not determined183565863269658851Mouse
4142366Chlq10_mcirculating hormone level QTL 10 (mouse)Not determined183629102270291180Mouse
15039381Ltgq8_mliver triglyceride QTL 8 (mouse)183820656972206569Mouse
15039383Mvlq5_mmicrovesicular liver lesion QTL 5 (mouse)183820656972206569Mouse
15039384Liviq1_mliver inflammation QTL 1 (mouse)183820656972206569Mouse
15039386Mvlq4_mmacrovesicular liver lesion QTL 4 (mouse)183820656972206569Mouse
12050070Nabq2_mnasal bone morphology QTL 2 (mouse)183910367773103793Mouse
1357639Obsty4_mobesity 4 (mouse)Not determined183961991484638778Mouse
1301902Hrtfm4_mheart failure modifier 4 (mouse)Not determined184331112077311343Mouse
1301215Thcr_mT helper cell response (mouse)Not determined184513060468778777Mouse
12904745Carcdq2_mcardiac collagen deposition QTL 2 (mouse)184642328780423287Mouse
11039493Ltpr8d_mLeishmania tropica response 8d (mouse)184687490380875042Mouse
11039494Ltpr8b_mLeishmania tropica response 8b (mouse)184687490380875042Mouse
1357630Tgq1_mtriglyceride QTL 1 (mouse)Not determined185105215685052311Mouse
11252137Modvl5_mmodifier of vacuolated lens 5 (mouse)185105215685052311Mouse
10412244Par5_mpulmonary adenoma resistance 5 (mouse)Not determined185166830085668468Mouse
1302099Hdlq30_mHDL QTL 30 (mouse)Not determined185166830085668468Mouse
1301853Heal9_mwound healing/regeneration 9 (mouse)Not determined185280527686805416Mouse
1302050Radpf4_mradiation pulmonary fibrosis 4 (mouse)Not determined185296615668778777Mouse
4142443Pgis1_mproteoglycan induced spondylitis 1 (mouse)Not determined185329102276914293Mouse
1301500Szs4_mseizure susceptibility 4 (mouse)Not determined185497587385514143Mouse
12880410V125Dq13_mvitamin D active form serum level QTL 13 (mouse)185643307190433071Mouse
12880430Fgf23lq4_mFGF23 serum level QTL 4 (mouse)185643307190433071Mouse
10412183Sstapa2_mSuseptibility to Staphylococus aureus infection 2 (mouse)Not determined185679463066952485Mouse
12880428V125Dq14_mvitamin D active form serum level QTL 14 (mouse)185743307190720763Mouse
1301353Lbw6_mlupus NZB x NZW 6 (mouse)Not determined185756233890720763Mouse
4141132Eae18_mexperimental allergic encephalomyelitis susceptibility 18 (mouse)Not determined5759055982604728Mouse
4140971Mbmq1_mmale body mass QTL 1 (mouse)Not determined5799028190720763Mouse
12910791Pwgrq8_mpre-weaning growth rate QTL 8 (mouse)185802139969349142Mouse
11049564Lmr29_mleishmaniasis resistance 29 (mouse)185918009290720763Mouse
11039495Ltpr8c_mLeishmania tropica response 8c (mouse)185918009290720763Mouse
11039492Ltpr8a_mLeishmania tropica response 8a (mouse)185918009290720763Mouse
1301103Pgia11_mproteoglycan induced arthritis 11 (mouse)Not determined185991418490720763Mouse
1302109Sluc28_msusceptibility to lung cancer 28 (mouse)Not determined185993532190720763Mouse
38455998Cdtm1_mCD62L+ CD8 TM cells 1 (mouse)186013307280043215Mouse
4142239Idd21.2_minsulin dependent diabetes susceptibility 21.2 (mouse)Not determined186127244874562414Mouse
1558803W3q16_mweight 3 weeks QTL 16 (mouse)Not determined186127244881491831Mouse
1558782Orgwq9_morgan weight QTL 9 (mouse)Not determined186127244882604728Mouse
11039518Ltpr8_mLeishmania tropica response 8 (mouse)186387490376180241Mouse

Markers in Region
D18Mit40  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381863,741,832 - 63,741,971UniSTSGRCm38
MGSCv371863,901,486 - 63,901,625UniSTSGRCm37
Celera1865,008,880 - 65,009,009UniSTS
Cytogenetic Map18D1-E3UniSTS
cM Map1837.0UniSTS
Whitehead Genetic1825.1UniSTS
Whitehead_YAC18 UniSTS
UniSTS:237821  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381863,828,594 - 63,828,795UniSTSGRCm38
MGSCv371863,988,248 - 63,988,449UniSTSGRCm37
Celera1865,099,125 - 65,099,326UniSTS
Cytogenetic Map18D1-E3UniSTS
RH126353  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381863,910,202 - 63,910,421UniSTSGRCm38
MGSCv371864,069,856 - 64,070,075UniSTSGRCm37
Celera1865,180,925 - 65,181,144UniSTS
Cytogenetic Map18D1-E3UniSTS
cM Map1835.0UniSTS
Whitehead/MRC_RH18815.36UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001014981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001360837 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006525478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102132 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC157903 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02072578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AEKQ02072587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF188123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF188124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK184475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137785 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000072726   ⟹   ENSMUSP00000072509
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,841,756 - 64,122,847 (+)Ensembl
GRCm38.p6 Ensembl1863,708,685 - 63,989,776 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235428   ⟹   ENSMUSP00000157794
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,911,043 - 63,998,361 (+)Ensembl
GRCm38.p6 Ensembl1863,777,972 - 63,865,290 (+)Ensembl
RefSeq Acc Id: ENSMUST00000235648   ⟹   ENSMUSP00000157457
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,841,766 - 63,873,569 (+)Ensembl
GRCm38.p6 Ensembl1863,708,695 - 63,740,498 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236879   ⟹   ENSMUSP00000158252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,841,786 - 64,122,825 (+)Ensembl
GRCm38.p6 Ensembl1863,708,715 - 63,989,754 (+)Ensembl
RefSeq Acc Id: ENSMUST00000236956   ⟹   ENSMUSP00000157696
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,841,784 - 63,998,374 (+)Ensembl
GRCm38.p6 Ensembl1863,708,713 - 63,865,303 (+)Ensembl
RefSeq Acc Id: ENSMUST00000238193
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1863,872,135 - 63,875,657 (+)Ensembl
GRCm38.p6 Ensembl1863,739,064 - 63,742,586 (+)Ensembl
RefSeq Acc Id: NM_001014981   ⟹   NP_001014981
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391863,841,766 - 64,122,831 (+)NCBI
GRCm381863,708,695 - 63,989,760 (+)ENTREZGENE
MGSCv371863,868,349 - 64,149,414 (+)RGD
Celera1864,975,852 - 65,257,594 (+)RGD
cM Map18 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001360837   ⟹   NP_001347766
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391863,841,766 - 64,122,831 (+)NCBI
GRCm381863,708,695 - 63,989,760 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006525478   ⟹   XP_006525541
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391863,841,731 - 64,120,382 (+)NCBI
GRCm381863,708,498 - 63,989,760 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001014981   ⟸   NM_001014981
- Peptide Label: isoform 1
- UniProtKB: Q80TY3 (UniProtKB/Swiss-Prot),   Q3U440 (UniProtKB/Swiss-Prot),   Q059Q1 (UniProtKB/Swiss-Prot),   Q920J0 (UniProtKB/Swiss-Prot),   Q920I9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006525541   ⟸   XM_006525478
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001347766   ⟸   NM_001360837
- Peptide Label: isoform 2
RefSeq Acc Id: ENSMUSP00000157696   ⟸   ENSMUST00000236956
RefSeq Acc Id: ENSMUSP00000158252   ⟸   ENSMUST00000236879
RefSeq Acc Id: ENSMUSP00000072509   ⟸   ENSMUST00000072726
RefSeq Acc Id: ENSMUSP00000157457   ⟸   ENSMUST00000235648
RefSeq Acc Id: ENSMUSP00000157794   ⟸   ENSMUST00000235428

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q920I9-F1-model_v2 AlphaFold Q920I9 1-1489 view protein structure

Promoters
RGD ID:13678000
Promoter ID:EPDNEW_M23149
Type:initiation region
Name:Wdr7_1
Description:Mus musculus WD repeat domain 7 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23150  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381863,708,715 - 63,708,775EPDNEW
RGD ID:13678002
Promoter ID:EPDNEW_M23150
Type:single initiation site
Name:Wdr7_2
Description:Mus musculus WD repeat domain 7 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M23149  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381863,719,498 - 63,719,558EPDNEW
RGD ID:6829612
Promoter ID:MM_KWN:25476
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000097552,   NM_001014981,   UC008FDZ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361863,867,991 - 63,868,491 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1860197 AgrOrtholog
Ensembl Genes ENSMUSG00000040560 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072726 ENTREZGENE
  ENSMUST00000072726.7 UniProtKB/Swiss-Prot
  ENSMUST00000235428.2 UniProtKB/TrEMBL
  ENSMUST00000235648.2 UniProtKB/TrEMBL
  ENSMUST00000236879 ENTREZGENE
  ENSMUST00000236879.2 UniProtKB/Swiss-Prot
  ENSMUST00000236956.2 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Quinoprotein_ADH-like_supfam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:104082 UniProtKB/Swiss-Prot
MGD MGI:1860197 ENTREZGENE
NCBI Gene 104082 ENTREZGENE
PANTHER RABCONNECTIN-3B, ISOFORM A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 7 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Wdr7 PhenoGen
PROSITE WD_REPEATS_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART WD40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF50998 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A494B9P4_MOUSE UniProtKB/TrEMBL
  A0A494B9S5_MOUSE UniProtKB/TrEMBL
  Q059Q1 ENTREZGENE
  Q05CF1_MOUSE UniProtKB/TrEMBL
  Q3U440 ENTREZGENE
  Q80TY3 ENTREZGENE
  Q8C711_MOUSE UniProtKB/TrEMBL
  Q920I9 ENTREZGENE
  Q920J0 ENTREZGENE
  WDR7_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q059Q1 UniProtKB/Swiss-Prot
  Q3U440 UniProtKB/Swiss-Prot
  Q80TY3 UniProtKB/Swiss-Prot
  Q920J0 UniProtKB/Swiss-Prot