Spdl1 (spindle apparatus coiled-coil protein 1) - Rat Genome Database

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Gene: Spdl1 (spindle apparatus coiled-coil protein 1) Mus musculus
Analyze
Symbol: Spdl1
Name: spindle apparatus coiled-coil protein 1
RGD ID: 1332014
MGI Page MGI
Description: Predicted to enable enzyme binding activity and kinetochore binding activity. Predicted to be involved in several processes, including establishment of mitotic spindle orientation; mitotic metaphase chromosome alignment; and protein localization to kinetochore. Predicted to act upstream of or within cell division. Predicted to be located in nucleus. Predicted to be part of outer kinetochore. Predicted to be active in spindle pole. Is expressed in several structures, including brain; gut; liver lobe; maturing glomerular tuft; and tooth. Orthologous to human SPDL1 (spindle apparatus coiled-coil protein 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1700018I02Rik; 2600001J17Rik; 2810049B11Rik; AA409762; Ccdc99; coiled-coil domain containing 99; coiled-coil domain-containing protein 99; protein Spindly; spindle apparatus coiled-coil domain-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm14735   Gm8873  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,700,012 - 34,724,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,700,017 - 34,724,468 (-)EnsemblGRCm39 Ensembl
GRCm381134,809,185 - 34,833,665 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,809,190 - 34,833,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,622,687 - 34,647,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,652,613 - 34,677,047 (-)NCBIMGSCv36mm8
Celera1138,586,433 - 38,610,792 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-hydroxypropanoic acid  (ISO)
2-methylcholine  (ISO)
3-methylcholanthrene  (EXP)
6-propyl-2-thiouracil  (ISO)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (EXP)
diclofenac  (EXP)
dicrotophos  (ISO)
diquat  (EXP)
disodium selenite  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
folic acid  (EXP)
FR900359  (ISO)
furan  (ISO)
hydrogen peroxide  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP)
leflunomide  (ISO)
lucanthone  (ISO)
menadione  (ISO)
methimazole  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
PCB138  (EXP)
phenobarbital  (EXP)
piroxicam  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
succimer  (EXP)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetrahydropalmatine  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
trimellitic anhydride  (EXP)
trovafloxacin  (EXP)
tungsten  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12904583   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:17015433   PMID:20505367   PMID:21267068   PMID:21677750   PMID:21873635   PMID:27694478   PMID:30550785   PMID:31690663   PMID:34321999   PMID:36877136  


Genomics

Comparative Map Data
Spdl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,700,012 - 34,724,492 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,700,017 - 34,724,468 (-)EnsemblGRCm39 Ensembl
GRCm381134,809,185 - 34,833,665 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,809,190 - 34,833,641 (-)EnsemblGRCm38mm10GRCm38
MGSCv371134,622,687 - 34,647,143 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,652,613 - 34,677,047 (-)NCBIMGSCv36mm8
Celera1138,586,433 - 38,610,792 (-)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.9NCBI
SPDL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385169,583,773 - 169,604,778 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5169,583,636 - 169,604,778 (+)EnsemblGRCh38hg38GRCh38
GRCh375169,010,777 - 169,031,782 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365168,943,216 - 168,964,360 (+)NCBINCBI36Build 36hg18NCBI36
Celera5165,042,230 - 165,063,368 (+)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,109,127 - 164,130,272 (+)NCBIHuRef
CHM1_15168,443,114 - 168,464,262 (+)NCBICHM1_1
T2T-CHM13v2.05170,119,147 - 170,140,150 (+)NCBIT2T-CHM13v2.0
Spdl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,773,456 - 19,798,341 (-)NCBIGRCr8
mRatBN7.21019,269,125 - 19,294,213 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1019,269,127 - 19,294,127 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1024,025,401 - 24,050,230 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01023,513,918 - 23,538,747 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01018,993,397 - 19,018,241 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01019,628,070 - 19,652,914 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1019,628,258 - 19,652,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01019,504,669 - 19,529,513 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41019,684,827 - 19,709,881 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11019,686,195 - 19,710,929 (-)NCBI
Celera1018,901,001 - 18,925,678 (-)NCBICelera
Cytogenetic Map10q12NCBI
Spdl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540822,594,776 - 22,628,429 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540822,590,474 - 22,619,168 (+)NCBIChiLan1.0ChiLan1.0
SPDL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24164,746,513 - 164,765,573 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15162,886,058 - 162,905,247 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05164,949,009 - 164,967,957 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15171,710,108 - 171,729,148 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5171,710,108 - 171,729,148 (+)Ensemblpanpan1.1panPan2
SPDL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1442,214,997 - 42,235,282 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl441,780,436 - 42,235,177 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha442,167,193 - 42,187,383 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0442,627,079 - 42,647,227 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl442,626,845 - 42,647,193 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1442,408,253 - 42,428,373 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,595,075 - 42,615,189 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0443,106,170 - 43,126,332 (-)NCBIUU_Cfam_GSD_1.0
Spdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945116,227,642 - 116,229,278 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936688840,345 - 841,808 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPDL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1654,277,052 - 54,303,544 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11654,276,943 - 54,303,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21658,844,321 - 58,870,836 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SPDL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12371,795,470 - 71,816,468 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2371,795,563 - 71,816,452 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660346,848,945 - 6,869,953 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Spdl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473320,326,893 - 20,350,923 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473320,326,565 - 20,350,937 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Spdl1
865 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:335
Count of miRNA genes:280
Interacting mature miRNAs:302
Transcripts:ENSMUST00000093191, ENSMUST00000148387, ENSMUST00000148853
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
1300607Tnbs2_mtri-nitrobenzene sulfonic acid susceptible 2 (mouse)Not determined112489805235126680Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse

Markers in Region
AA409762  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,809,353 - 34,809,485UniSTSGRCm38
MGSCv371134,622,855 - 34,622,987UniSTSGRCm37
Celera1138,586,601 - 38,586,733UniSTS
Cytogenetic Map11A5UniSTS
Whitehead/MRC_RH11494.75UniSTS
RH125878  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381134,809,227 - 34,809,476UniSTSGRCm38
MGSCv371134,622,729 - 34,622,978UniSTSGRCm37
Celera1138,586,475 - 38,586,724UniSTS
Cytogenetic Map11A5UniSTS
Whitehead/MRC_RH11490.89UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000093191   ⟹   ENSMUSP00000090882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,700,017 - 34,724,468 (-)Ensembl
GRCm38.p6 Ensembl1134,809,190 - 34,833,641 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148387
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,721,161 - 34,724,419 (-)Ensembl
GRCm38.p6 Ensembl1134,830,334 - 34,833,592 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1134,712,868 - 34,714,778 (-)Ensembl
GRCm38.p6 Ensembl1134,822,041 - 34,823,951 (-)Ensembl
RefSeq Acc Id: NM_027411   ⟹   NP_081687
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,700,012 - 34,724,468 (-)NCBI
GRCm381134,809,185 - 34,833,641 (-)NCBI
MGSCv371134,622,687 - 34,647,143 (-)RGD
Celera1138,586,433 - 38,610,792 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534169   ⟹   XP_006534232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,700,012 - 34,724,492 (-)NCBI
GRCm381134,809,185 - 34,833,665 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011249245   ⟹   XP_011247547
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,700,012 - 34,724,492 (-)NCBI
GRCm381134,809,185 - 34,833,665 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156979   ⟹   XP_036012872
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391134,700,012 - 34,724,492 (-)NCBI
Sequence:
RefSeq Acc Id: NP_081687   ⟸   NM_027411
- UniProtKB: Q5DY45 (UniProtKB/Swiss-Prot),   Q923A2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534232   ⟸   XM_006534169
- Peptide Label: isoform X1
- UniProtKB: Q5DY45 (UniProtKB/Swiss-Prot),   Q923A2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011247547   ⟸   XM_011249245
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000090882   ⟸   ENSMUST00000093191
RefSeq Acc Id: XP_036012872   ⟸   XM_036156979
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q923A2-F1-model_v2 AlphaFold Q923A2 1-608 view protein structure

Promoters
RGD ID:6820566
Promoter ID:MM_KWN:6939
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_027411,   OTTMUST00000018346
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361134,646,836 - 34,647,337 (-)MPROMDB
RGD ID:8674292
Promoter ID:EPDNEW_M15176
Type:initiation region
Name:Spdl1_1
Description:Mus musculus spindle apparatus coiled-coil protein 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381134,833,616 - 34,833,676EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917635 AgrOrtholog
Ensembl Genes ENSMUSG00000069910 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000093191 ENTREZGENE
  ENSMUST00000093191.3 UniProtKB/Swiss-Prot
InterPro SPDLY_chordates UniProtKB/Swiss-Prot
KEGG Report mmu:70385 UniProtKB/Swiss-Prot
MGD MGI:1917635 ENTREZGENE
NCBI Gene 70385 ENTREZGENE
PANTHER BICD FAMILY-LIKE CARGO ADAPTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN SPINDLY UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Spdl1 PhenoGen
UniProt Q5DY45 ENTREZGENE
  Q923A2 ENTREZGENE
  Q9CSG1_MOUSE UniProtKB/TrEMBL
  Q9CT58_MOUSE UniProtKB/TrEMBL
  SPDLY_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5DY45 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-25 Spdl1  spindle apparatus coiled-coil protein 1  Ccdc99  coiled-coil domain containing 99  Symbol and/or name change 5135510 APPROVED