Ccdc124 (coiled-coil domain containing 124) - Rat Genome Database
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Gene: Ccdc124 (coiled-coil domain containing 124) Mus musculus
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Symbol: Ccdc124
Name: coiled-coil domain containing 124
RGD ID: 1332007
MGI Page MGI
Description: Predicted to be involved in cell cycle and cell division. Predicted to localize to cytosol and plasma membrane. Orthologous to human CCDC124 (coiled-coil domain containing 124); INTERACTS WITH 1,2-dimethylhydrazine; 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: 1810023B24Rik; coiled-coil domain-containing protein 124
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,320,870 - 71,326,134 (-)NCBIGRCm39mm39
GRCm38870,868,226 - 70,873,490 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,868,227 - 70,873,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,392,126 - 73,397,389 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,797,216 - 73,802,479 (-)NCBImm8
Celera873,429,530 - 73,434,793 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750  
PMID:28671696   PMID:30196744  


Genomics

Comparative Map Data
Ccdc124
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,320,870 - 71,326,134 (-)NCBIGRCm39mm39
GRCm38870,868,226 - 70,873,490 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,868,227 - 70,873,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv37873,392,126 - 73,397,389 (-)NCBIGRCm37mm9NCBIm37
MGSCv36873,797,216 - 73,802,479 (-)NCBImm8
Celera873,429,530 - 73,434,793 (-)NCBICelera
Cytogenetic Map8B3.3NCBI
CCDC124
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1917,933,015 - 17,943,991 (+)EnsemblGRCh38hg38GRCh38
GRCh381917,933,015 - 17,943,985 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371918,043,824 - 18,054,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,906,905 - 17,915,783 (+)NCBINCBI36hg18NCBI36
Celera1917,945,548 - 17,956,518 (+)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1917,608,966 - 17,619,929 (+)NCBIHuRef
CHM1_11918,043,548 - 18,054,513 (+)NCBICHM1_1
Ccdc124
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01620,317,446 - 20,323,265 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1620,317,446 - 20,323,265 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01620,174,990 - 20,180,809 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,074,584 - 19,080,343 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11619,075,011 - 19,080,084 (+)NCBI
Celera1618,759,366 - 18,765,185 (+)NCBICelera
Cytogenetic Map16p14NCBI
Ccdc124
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555243,349,653 - 3,353,122 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555243,349,444 - 3,355,748 (-)NCBIChiLan1.0ChiLan1.0
CCDC124
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11918,386,017 - 18,397,647 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1918,386,017 - 18,397,647 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01917,412,778 - 17,423,756 (+)NCBIMhudiblu_PPA_v0panPan3
CCDC124
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2044,977,393 - 44,983,349 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12044,977,237 - 44,987,436 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ccdc124
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365963,141,177 - 3,148,110 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC124
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl259,819,111 - 59,831,482 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1259,821,557 - 59,831,561 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2259,390,287 - 59,400,283 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC124
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1616,400,252 - 16,418,474 (+)NCBI
ChlSab1.1 Ensembl616,399,872 - 16,418,596 (+)Ensembl
Ccdc124
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,422,392 - 1,427,392 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747005Mancz7_mmandible centroid size 7 (mouse)85005330684053306Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
10766466Char12_mP. chabaudi malaria resistance QTL 12 (mouse)86826982782600347Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
1301544Iba3_minduction of brown adipocytes 3 (mouse)Not determined84429488078295025Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1301441Skull11_mskull morphology 11 (mouse)Not determined84773713481737254Mouse
10766453Char11_mP. chabaudi malaria resistance QTL 11 (mouse)84763703081637146Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
14746987Manh64_mmandible shape 64 (mouse)85005330684053306Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
4140966Egq12_mearly growth QTL 12 (mouse)Not determined3201654471287993Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
1558870Eae36_mexperimental allergic encephalomyelitis susceptibility 36 (mouse)Not determined81472316071045600Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
4141437W10q14_mweight 10 weeks QTL 14 (mouse)Not determined3201654471287993Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1357715Alaa3_malopecia areata 3 (mouse)Not determined84879293982793021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141172W6q9_mweight 6 weeks QTL 9 (mouse)Not determined3201654471287993Mouse
1301717Adip4_madiposity 4 (mouse)Not determined84763703081637146Mouse
1357811Orq3_movulation rate QTL 3 (mouse)Not determined83201654471287993Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:224
Count of miRNA genes:194
Interacting mature miRNAs:209
Transcripts:ENSMUST00000007865
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000007865   ⟹   ENSMUSP00000007865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,868,227 - 70,873,935 (-)Ensembl
RefSeq Acc Id: ENSMUST00000212680   ⟹   ENSMUSP00000148322
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl870,869,988 - 70,873,383 (-)Ensembl
RefSeq Acc Id: NM_026964   ⟹   NP_081240
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,320,871 - 71,326,134 (-)NCBI
GRCm38870,868,227 - 70,873,490 (-)NCBI
MGSCv37873,392,126 - 73,397,389 (-)RGD
Celera873,429,530 - 73,434,793 (-)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006509655   ⟹   XP_006509718
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,320,870 - 71,326,112 (-)NCBI
GRCm38870,868,226 - 70,873,468 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036153949   ⟹   XP_036009842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39871,320,870 - 71,326,116 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_081240   ⟸   NM_026964
- UniProtKB: Q9D8X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006509718   ⟸   XM_006509655
- Peptide Label: isoform X1
- UniProtKB: Q9D8X2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000007865   ⟸   ENSMUST00000007865
RefSeq Acc Id: ENSMUSP00000148322   ⟸   ENSMUST00000212680
RefSeq Acc Id: XP_036009842   ⟸   XM_036153949
- Peptide Label: isoform X1

Promoters
RGD ID:8667363
Promoter ID:EPDNEW_M11713
Type:multiple initiation site
Name:Ccdc124_1
Description:Mus musculus coiled-coil domain containing 124 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38870,873,487 - 70,873,547EPDNEW
RGD ID:6842899
Promoter ID:MM_KWN:54754
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4
Transcripts:NM_026964
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36873,397,076 - 73,397,852 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916403 AgrOrtholog
Ensembl Genes ENSMUSG00000007721 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000007865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148322 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000007865 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000212680 UniProtKB/TrEMBL
InterPro Ccdc124/Oxs1 UniProtKB/Swiss-Prot
KEGG Report mmu:234388 UniProtKB/Swiss-Prot
MGD MGI:1916403 ENTREZGENE
NCBI Gene 234388 ENTREZGENE
PANTHER PTHR21680 UniProtKB/Swiss-Prot
Pfam Ccdc124 UniProtKB/Swiss-Prot
PhenoGen Ccdc124 PhenoGen
UniProt A0A1D5RLD5_MOUSE UniProtKB/TrEMBL
  CC124_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q8C2T0 UniProtKB/Swiss-Prot